Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005913

Physical Location & Seq

Genomic Coordinates Forward (+)

4862925 .. 4864004

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04251.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATGGAGAAACAAGAAGATGCAGTGGAAGCATGTCCTTTGGAGGCCCCAGCCGCCTCCGAAGTACCACCATCACCGCCTTCGAATTCTTTGGAAAGCAAAGAAGATGGTGATGGCGATGACAAGAGCAACATGAAGATGAAGGAGAAAGTAATTGTCTTAATAGACGACTCCCAACAATCACCGGAGAAGGAGAAGGAGACGGAGGCTGTAGTGGGTGGATCCACTAGTTCTAGCCTCCTGCTTCATATGGCACCTTCCAATCCTGAATCCAATATAGAACTGGCTCTTTTCAACTCTTCATTGTCTCAGCAAGTGCCCTACAACGGCGAGGAGGTGGTGGAGGTGGAGGAGAGCTCAGACGAGAACCCGGGTGAGGGTGATAATAAGAAAAAGGAGCTTAGGGTTTTCAAATGCAACTTCTGTCAGAGAAAGTTCTCAACCTCTCAGGCCTTGGGAGGGCACCAGAACGCCCACAAGCAGGAGCGCCAGCTGGCGAAACGGCGGAACCACGCTTACGAAATGGGTGGTGGATTAGGGCACTCATCACACTTTCCTTATTACTCATCCCCATATTCAAGCTTCTCCACACACTCTCTATATGGATCTTACAACAGGTCCTCTCTCGGTGTCAGAACGGACTCCTTGATTCATAAGCCTTCTTACACCCCATGGTCCTCAACTTACGGCCGCTTTGGCCTTGGCCTCGGTGGGTGGTCGAGGCCAAGCTCGAACCTCATCAACCCTATTGATCAACACAGGATAGCGTTGCAAGGCCTTCAAAATAATATCAATGGCTTAGGGCTTGCTGGACGAACTGCAACTGCTCCGAGTGCTAGTGGCCTTCACAGCTTTGGTGGTTCGAATCTGTCAGGAGTCAACAACAGGGTGCCGCCAACAAGTGATGACAGTACTCTCCGGCGAGCAGAGCCTCCTACATGTGATACAGATATTGCTGGACTCGATCTGTCGCTTAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

328

Amino Acids

35.34

Weight (kDa)

5.51

Isoelectric Point (pI)

64.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12011 FvH4_7g04251
malus_domestica	MD07G1042100.v1.1
prunus_persica	Prupe.2G048100_v2.0.a1 Prupe.2G048400_v2.0.a1
pyrus_communis	pycom02g23410
rosa_chinensis	RchiOBHm_Chr1g0328791
rosa_laevigata	RLG00000008539 RLG00000029918
rosa_multiflora	Rmu_co8270465.1_g000001 Rmu_sc0000652.1_g000003 Rmu_sc0004241.1_g000001 Rmu_sc0013419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321370 Rroxscaffold_5G00354150
rosa_rugosa	Rorug01G0075900 Rorug04G0095500
rosa_samantha	Rh1AG094600 Rh1BG075500 Rh1CG091900 Rh1DG097900 Rh4AG157200 Rh4BG156700 Rh4CG167200 Rh4DG150900
rosa_wichuraiana	Rw1G007380 Rw4G012850 Rw4G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	253, 462, 889
AciI	CCGC	5 cut(s)	54, 77, 505, 691, 893
AclWI	GGATC	3 cut(s)	216, 229, 613
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	1 cut(s)	85
AfaI	GTAC	2 cut(s)	66, 913
AfiI	CCNNNNNNNGG	5 cut(s)	326, 376, 377, 459, 481
AflII	CTTAAG	1 cut(s)	974
AflIII	ACRYGT	1 cut(s)	938
AgsI	TTSAA	4 cut(s)	295, 412, 579, 782
AhlI	ACTAGT	1 cut(s)	227
AluBI	AGCT	7 cut(s)	357, 400, 493, 582, 729, 852, 979
AluI	AGCT	7 cut(s)	357, 400, 493, 582, 729, 852, 979
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	194, 312
AlwI	GGATC	3 cut(s)	216, 229, 613
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	8 cut(s)	45, 450, 688, 697, 703, 722, 775, 841
ApoI	RAATTY	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	3 cut(s)	46, 618, 675
AsuC2I	CCSGG	2 cut(s)	371, 372
AsuHPI	GGTGA	5 cut(s)	66, 122, 174, 386, 392
AsuII	TTCGAA	2 cut(s)	83, 863
AvaI	CYCGRG	1 cut(s)	370
AvaII	GGWCC	2 cut(s)	618, 675
BaeGI	GKGCMC	3 cut(s)	321, 465, 543
BamHI	GGATCC	1 cut(s)	221
BanI	GGYRCC	3 cut(s)	253, 462, 889
BanII	GRGCYC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	359
BccI	CCATC	3 cut(s)	79, 101, 107
BceAI	ACGGC	3 cut(s)	343, 518, 703
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	2 cut(s)	371, 372
BcoDI	GTCTC	2 cut(s)	194, 312
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	3 cut(s)	228, 234, 837
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	490
BfrI	CTTAAG	1 cut(s)	974
BglI	GCCNNNNNGGC	1 cut(s)	696
BisI	GCNGC	3 cut(s)	54, 691, 893
BlsI	GCNGC	3 cut(s)	55, 692, 894
BmcAI	AGTACT	1 cut(s)	913
Bme1390I	CCNGG	2 cut(s)	371, 372
Bme18I	GGWCC	2 cut(s)	618, 675
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	3 cut(s)	46, 618, 675
BmiI	GGNNCC	6 cut(s)	48, 223, 255, 464, 509, 891
BmrFI	CCNGG	2 cut(s)	371, 372
BmsI	GCATC	1 cut(s)	10
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu10I	CCTNAGC	2 cut(s)	401, 799
Bpu14I	TTCGAA	2 cut(s)	83, 863
BpuMI	CCSGG	2 cut(s)	371, 372
BsaJI	CCNNGG	5 cut(s)	370, 453, 671, 700, 706
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	5 cut(s)	326, 376, 377, 459, 481
Bse1I	ACTGG	1 cut(s)	288
BseDI	CCNNGG	5 cut(s)	370, 453, 671, 700, 706
BseGI	GGATG	1 cut(s)	566
BseLI	CCNNNNNNNGG	5 cut(s)	326, 376, 377, 459, 481
BseMII	CTCAG	3 cut(s)	323, 372, 461
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	2 cut(s)	347, 365
BseSI	GKGCMC	3 cut(s)	321, 465, 543
BseX3I	CGGCCG	1 cut(s)	688
BseYI	CCCAGC	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	691
BshFI	GGCC	8 cut(s)	47, 452, 690, 699, 705, 724, 777, 843
BshNI	GGYRCC	3 cut(s)	253, 462, 889
BsiEI	CGRYCG	1 cut(s)	691
BsiHKAI	GWGCWC	1 cut(s)	359
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	3 cut(s)	185, 371, 919
BslI	CCNNNNNNNGG	5 cut(s)	326, 376, 377, 459, 481
BsmAI	GTCTC	2 cut(s)	194, 312
BsmBI	CGTCTC	1 cut(s)	194
BsnI	GGCC	8 cut(s)	47, 452, 690, 699, 705, 724, 777, 843
BsoBI	CYCGRG	1 cut(s)	370
Bsp119I	TTCGAA	2 cut(s)	83, 863
Bsp1286I	GDGCHC	4 cut(s)	321, 359, 465, 543
Bsp143I	GATC	4 cut(s)	221, 605, 751, 964
Bsp19I	CCATGG	1 cut(s)	671
BspACI	CCGC	5 cut(s)	54, 77, 505, 691, 893
BspANI	GGCC	8 cut(s)	47, 452, 690, 699, 705, 724, 777, 843
BspCNI	CTCAG	3 cut(s)	322, 371, 460
BspLI	GGNNCC	6 cut(s)	48, 223, 255, 464, 509, 891
BspPI	GGATC	3 cut(s)	216, 229, 613
BspT104I	TTCGAA	2 cut(s)	83, 863
BspT107I	GGYRCC	3 cut(s)	253, 462, 889
BspTI	CTTAAG	1 cut(s)	974
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	5 cut(s)	370, 453, 671, 700, 706
BssMI	GATC	4 cut(s)	221, 605, 751, 964
BssT1I	CCWWGG	3 cut(s)	453, 671, 700
Bst4CI	ACNGT	1 cut(s)	911
Bst6I	CTCTTC	1 cut(s)	304
BstAFI	CTTAAG	1 cut(s)	974
BstBI	TTCGAA	2 cut(s)	83, 863
BstC8I	GCNNGC	4 cut(s)	491, 495, 807, 924
BstDEI	CTNAG	5 cut(s)	309, 358, 401, 447, 799
BstDSI	CCRYGG	1 cut(s)	671
BstF5I	GGATG	1 cut(s)	566
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	4 cut(s)	224, 608, 754, 967
BstMAI	GTCTC	2 cut(s)	194, 312
BstMBI	GATC	4 cut(s)	221, 605, 751, 964
BstMCI	CGRYCG	1 cut(s)	691
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 53, 696, 833, 849, 928
BstNSI	RCATGY	2 cut(s)	36, 942
BstSCI	CCNGG	2 cut(s)	369, 370
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	3 cut(s)	321, 465, 543
BstX2I	RGATCY	2 cut(s)	221, 605
BstYI	RGATCY	2 cut(s)	221, 605
BstZI	CGGCCG	1 cut(s)	688
BsuRI	GGCC	8 cut(s)	47, 452, 690, 699, 705, 724, 777, 843
BtgI	CCRYGG	1 cut(s)	671
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	566
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	4 cut(s)	491, 495, 807, 924
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	3 cut(s)	46, 618, 675
Cfr9I	CCCGGG	1 cut(s)	370
Csp6I	GTAC	2 cut(s)	65, 912
CviAII	CATG	4 cut(s)	33, 133, 672, 939
CviQI	GTAC	2 cut(s)	65, 912
DdeI	CTNAG	5 cut(s)	309, 358, 401, 447, 799
DpnI	GATC	4 cut(s)	223, 607, 753, 966
DpnII	GATC	4 cut(s)	221, 605, 751, 964
EaeI	YGGCCR	1 cut(s)	688
EagI	CGGCCG	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
EciI	GGCGGA	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	357
EclXI	CGGCCG	1 cut(s)	688
Eco130I	CCWWGG	3 cut(s)	453, 671, 700
Eco147I	AGGCCT	2 cut(s)	452, 777
Eco24I	GRGCYC	1 cut(s)	359
Eco47I	GGWCC	2 cut(s)	618, 675
Eco52I	CGGCCG	1 cut(s)	688
Eco53kI	GAGCTC	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	357
EcoO109I	RGGNCCY	2 cut(s)	46, 618
EcoRI	GAATTC	1 cut(s)	85
EcoT14I	CCWWGG	3 cut(s)	453, 671, 700
EcoT38I	GRGCYC	1 cut(s)	359
ErhI	CCWWGG	3 cut(s)	453, 671, 700
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	4 cut(s)	36, 136, 675, 942
FatI	CATG	4 cut(s)	32, 132, 671, 938
FauNDI	CATATG	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	3 cut(s)	54, 691, 893
FokI	GGATG	1 cut(s)	553
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	3 cut(s)	54, 691, 893
FspBI	CTAG	3 cut(s)	228, 234, 837
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	3 cut(s)	54, 691, 893
GsaI	CCCAGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	8 cut(s)	47, 452, 690, 699, 705, 724, 777, 843
HapII	CCGG	3 cut(s)	185, 371, 919
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	4 cut(s)	36, 136, 675, 942
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HindIII	AAGCTT	2 cut(s)	580, 977
HinfI	GANTC	7 cut(s)	170, 269, 641, 649, 865, 876, 960
HpaII	CCGG	3 cut(s)	185, 371, 919
HphI	GGTGA	5 cut(s)	66, 122, 174, 386, 392
Hpy166II	GTNNAC	1 cut(s)	880
Hpy188I	TCNGA	5 cut(s)	61, 361, 429, 635, 831
Hpy188III	TCNNGA	2 cut(s)	266, 873
Hpy8I	GTNNAC	1 cut(s)	880
HpyAV	CCTTC	8 cut(s)	90, 136, 184, 190, 267, 669, 788, 854
HpyCH4III	ACNGT	1 cut(s)	911
HpyCH4V	TGCA	4 cut(s)	23, 417, 772, 821
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 53, 696, 833, 849, 928
HpyF3I	CTNAG	5 cut(s)	309, 358, 401, 447, 799
Hsp92II	CATG	4 cut(s)	36, 136, 675, 942
HspAI	GCGC	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	4 cut(s)	221, 605, 751, 964
LmnI	GCTCC	3 cut(s)	397, 484, 832
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	3 cut(s)	228, 234, 837
MalI	GATC	4 cut(s)	223, 607, 753, 966
MboI	GATC	4 cut(s)	221, 605, 751, 964
MboII	GAAGA	4 cut(s)	29, 116, 148, 291
MflI	RGATCY	2 cut(s)	221, 605
MhlI	GDGCHC	4 cut(s)	321, 359, 465, 543
MluCI	AATT	2 cut(s)	85, 153
MlyI	GAGTC	4 cut(s)	164, 635, 885, 954
MseI	TTAA	2 cut(s)	161, 975
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	493
MspCI	CTTAAG	1 cut(s)	974
MspI	CCGG	3 cut(s)	185, 371, 919
MspR9I	CCNGG	2 cut(s)	371, 372
MwoI	GCNNNNNNNGC	6 cut(s)	29, 53, 696, 833, 849, 928
NciI	CCSGG	2 cut(s)	371, 372
NcoI	CCATGG	1 cut(s)	671
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	4 cut(s)	221, 605, 751, 964
NlaIII	CATG	4 cut(s)	36, 136, 675, 942
NlaIV	GGNNCC	6 cut(s)	48, 223, 255, 464, 509, 891
NspI	RCATGY	2 cut(s)	36, 942
NspV	TTCGAA	2 cut(s)	83, 863
PceI	AGGCCT	2 cut(s)	452, 777
PciI	ACATGT	1 cut(s)	938
PfeI	GAWTC	3 cut(s)	269, 649, 865
PkrI	GCNGC	3 cut(s)	55, 692, 894
PleI	GAGTC	4 cut(s)	164, 635, 884, 954
PpsI	GAGTC	4 cut(s)	164, 635, 884, 954
PpuMI	RGGWCCY	1 cut(s)	618
PscI	ACATGT	1 cut(s)	938
Psp124BI	GAGCTC	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	618
PspFI	CCCAGC	1 cut(s)	49
PspN4I	GGNNCC	6 cut(s)	48, 223, 255, 464, 509, 891
PspPI	GGNCC	3 cut(s)	46, 618, 675
PspPPI	RGGWCCY	1 cut(s)	618
PsrI	GAACNNNNNNTAC	2 cut(s)	500, 532
PsuI	RGATCY	2 cut(s)	221, 605
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	2 cut(s)	66, 913
RsaNI	GTAC	2 cut(s)	65, 912
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	161, 975
SatI	GCNGC	3 cut(s)	54, 691, 893
Sau3AI	GATC	4 cut(s)	221, 605, 751, 964
Sau96I	GGNCC	3 cut(s)	46, 618, 675
ScaI	AGTACT	1 cut(s)	913
SchI	GAGTC	4 cut(s)	164, 635, 885, 954
ScrFI	CCNGG	2 cut(s)	371, 372
SduI	GDGCHC	4 cut(s)	321, 359, 465, 543
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	210
SfiI	GGCCNNNNNGGCC	1 cut(s)	696
SfuI	TTCGAA	2 cut(s)	83, 863
SinI	GGWCC	2 cut(s)	618, 675
SmaI	CCCGGG	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	974
SmoI	CTYRAG	1 cut(s)	974
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	2 cut(s)	85, 153
SseBI	AGGCCT	2 cut(s)	452, 777
SsiI	CCGC	5 cut(s)	54, 77, 505, 691, 893
SspMI	CTAG	3 cut(s)	228, 234, 837
SstI	GAGCTC	1 cut(s)	359
StuI	AGGCCT	2 cut(s)	452, 777
StyD4I	CCNGG	2 cut(s)	369, 370
StyI	CCWWGG	3 cut(s)	453, 671, 700
TaaI	ACNGT	1 cut(s)	911
TaqI	TCGA	5 cut(s)	83, 719, 731, 863, 963
TasI	AATT	2 cut(s)	85, 153
TatI	WGTACW	1 cut(s)	911
TauI	GCSGC	3 cut(s)	56, 693, 895
TfiI	GAWTC	3 cut(s)	269, 649, 865
Tru1I	TTAA	2 cut(s)	161, 975
Tru9I	TTAA	2 cut(s)	161, 975
TscAI	CASTG	1 cut(s)	30
TspDTI	ATGAA	5 cut(s)	149, 155, 236, 291, 641
TspGWI	ACGGA	2 cut(s)	218, 653
TspMI	CCCGGG	1 cut(s)	370
TspRI	CASTG	1 cut(s)	30
Vha464I	CTTAAG	1 cut(s)	974
VpaK11BI	GGWCC	2 cut(s)	618, 675
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	2 cut(s)	36, 942
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmaI	CCCGGG	1 cut(s)	370
XspI	CTAG	3 cut(s)	228, 234, 837
ZrmI	AGTACT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.