Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005913

Physical Location & Seq

Genomic Coordinates Reverse (-)

3534965 .. 3535993

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1042100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTGAAGAACATCAAAGCCCTTCCGAAGCCTCTAACATCTCAGGGGCCTCAGATGGCACTCCACCACCAAAAAAAGATAGCCCTCCTCCTCCCCCTCCTCCTGACCTTCCTGACCAAAAAATGAAGATGAAAATGAAAGAAAAAATCATCATCGATGATTCTGATGATGAACAACCCCAACCCAAACTCAAAAAGCCACCCCCGGCAGCCGGATCATCCTCATCACTAACACCAAGTTCACGTGCCTTGCTTGATCTGAAGCTTTCCAACAACGACCCTGGTCATGCGTCAGGGTCTTCGAACGAACTCGTTCTGTTCAACCCTCTGAATCAGGGTTCATCATTGAACCCAGGGGGATTAGGGTTATTGTCTCAACACAATGAGCCAAGGAGCGAGAGCCCGCGTGGTAGTGATGGGAGAAAACCCCGAACTAGGGTTTTCACATGCAACTTTTGCAAGAGAGATTTCTCTACTTCCCAAGCATTGGGAGGTCATCAAAACGCTCACAAACAAGAGCGTGCCTTGGCCAAAAGGCGCCAAGGAGGAATAGGAATGGACAATCTATTCGGACATTCCTATCGTTATTATAGTCCATATTTAAGTATCACTCAACACCCTCTCTATGGATCTTATGGTAGATCTCTTGGGGTTAGGATGGACTCCATGATTCACAAGCCTTCTTATCCATGGTCTGCCTCGACGTCCGGGTTCGGGCGCTTTGGCCATGGTATTGGTGCTGGGGGTTGGTCATCATCAAGGCCAGGAGGCCTCATTAATAACTTTCAATCCTCCATTGATAGGCTCAACCTTCATGGCGTTCATGCTAATACTACTCCCAGTGGAACGTTAGGGATTCCAGGAACCAGCAGTGCTTCAAGGTTTGATCAGGAAATTGGTTCTTCTCGCAACTTTGGTGGTTCAAACTTCGGAATCAACAGGCCAATCATTGCTGATGATGTTCTCCGCCATGAGCCTCTGGAACCCGTTACAGATGCTTCTGGACTCGATTTATCTCTTAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

343

Amino Acids

36.64

Weight (kDa)

9.13

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12011 FvH4_7g04251
malus_domestica	MD07G1042100.v1.1
prunus_persica	Prupe.2G048100_v2.0.a1 Prupe.2G048400_v2.0.a1
pyrus_communis	pycom02g23410
rosa_chinensis	RchiOBHm_Chr1g0328791
rosa_laevigata	RLG00000008539 RLG00000029918
rosa_multiflora	Rmu_co8270465.1_g000001 Rmu_sc0000652.1_g000003 Rmu_sc0004241.1_g000001 Rmu_sc0013419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321370 Rroxscaffold_5G00354150
rosa_rugosa	Rorug01G0075900 Rorug04G0095500
rosa_samantha	Rh1AG094600 Rh1BG075500 Rh1CG091900 Rh1DG097900 Rh4AG157200 Rh4BG156700 Rh4CG167200 Rh4DG150900
rosa_wichuraiana	Rw1G007380 Rw4G012850 Rw4G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	707
AccB1I	GGYRCC	1 cut(s)	537
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccII	CGCG	1 cut(s)	406
AciI	CCGC	2 cut(s)	404, 967
AclI	AACGTT	1 cut(s)	848
AclWI	GGATC	2 cut(s)	223, 637
AcoI	YGGCCR	2 cut(s)	528, 724
AcuI	CTGAAG	2 cut(s)	27, 281
AcvI	CACGTG	1 cut(s)	245
AcyI	GRCGYC	2 cut(s)	538, 704
AfiI	CCNNNNNNNGG	7 cut(s)	212, 435, 436, 487, 626, 714, 801
AflII	CTTAAG	1 cut(s)	1019
AgsI	TTSAA	5 cut(s)	322, 349, 788, 879, 924
AjnI	CCWGG	4 cut(s)	280, 352, 763, 859
AluBI	AGCT	2 cut(s)	265, 1024
AluI	AGCT	2 cut(s)	265, 1024
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	2 cut(s)	223, 637
AoxI	GGCC	6 cut(s)	48, 528, 724, 761, 769, 941
ApeKI	GCWGC	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AseI	ATTAAT	1 cut(s)	777
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	2 cut(s)	540, 720
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	2 cut(s)	206, 709
AsuII	TTCGAA	1 cut(s)	302
BalI	TGGCCA	2 cut(s)	530, 726
BanI	GGYRCC	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	404
BbrPI	CACGTG	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	3 cut(s)	50, 410, 652
BciT130I	CCWGG	4 cut(s)	282, 354, 765, 861
BclI	TGATCA	1 cut(s)	886
BcnI	CCSGG	2 cut(s)	206, 709
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	435
BfoI	RGCGCY	2 cut(s)	541, 721
BfrI	CTTAAG	1 cut(s)	1019
BglII	AGATCT	1 cut(s)	641
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	6 cut(s)	206, 282, 354, 709, 765, 861
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	4 cut(s)	49, 539, 865, 984
BmrFI	CCNGG	6 cut(s)	206, 282, 354, 709, 765, 861
BmrI	ACTGGG	1 cut(s)	834
BmsI	GCATC	1 cut(s)	985
BmuI	ACTGGG	1 cut(s)	834
BoxI	GACNNNNGTC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	302
BpuMI	CCSGG	2 cut(s)	206, 709
Bsa29I	ATCGAT	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	245
BsaHI	GRCGYC	2 cut(s)	538, 704
BsaJI	CCNNGG	9 cut(s)	204, 280, 352, 353, 389, 525, 541, 689, 727
Bsc4I	CCNNNNNNNGG	7 cut(s)	212, 435, 436, 487, 626, 714, 801
Bse1I	ACTGG	1 cut(s)	840
Bse3DI	GCAATG	1 cut(s)	948
BseBI	CCWGG	4 cut(s)	282, 354, 765, 861
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	9 cut(s)	204, 280, 352, 353, 389, 525, 541, 689, 727
BseGI	GGATG	2 cut(s)	218, 663
BseLI	CCNNNNNNNGG	7 cut(s)	212, 435, 436, 487, 626, 714, 801
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	2 cut(s)	57, 66
BseNI	ACTGG	1 cut(s)	840
BseRI	GAGGAG	3 cut(s)	78, 81, 90
BseXI	GCAGC	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	740
Bsh1236I	CGCG	1 cut(s)	406
BshFI	GGCC	6 cut(s)	50, 530, 726, 763, 771, 943
BshNI	GGYRCC	1 cut(s)	537
BshVI	ATCGAT	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	206, 213, 708
BslI	CCNNNNNNNGG	7 cut(s)	212, 435, 436, 487, 626, 714, 801
BsmAI	GTCTC	1 cut(s)	378
BsnI	GGCC	6 cut(s)	50, 530, 726, 763, 771, 943
Bsp119I	TTCGAA	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	5 cut(s)	215, 256, 629, 641, 886
Bsp19I	CCATGG	2 cut(s)	689, 727
BspACI	CCGC	2 cut(s)	404, 967
BspANI	GGCC	6 cut(s)	50, 530, 726, 763, 771, 943
BspCNI	CTCAG	2 cut(s)	56, 65
BspDI	ATCGAT	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	4 cut(s)	49, 539, 865, 984
BspPI	GGATC	2 cut(s)	223, 637
BspT104I	TTCGAA	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	537
BspTI	CTTAAG	1 cut(s)	1019
BsrDI	GCAATG	1 cut(s)	948
BsrI	ACTGG	1 cut(s)	840
BssECI	CCNNGG	9 cut(s)	204, 280, 352, 353, 389, 525, 541, 689, 727
BssMI	GATC	5 cut(s)	215, 256, 629, 641, 886
BssNI	GRCGYC	2 cut(s)	538, 704
BssT1I	CCWWGG	5 cut(s)	389, 525, 541, 689, 727
Bst2UI	CCWGG	4 cut(s)	282, 354, 765, 861
BstACI	GRCGYC	2 cut(s)	538, 704
BstAFI	CTTAAG	1 cut(s)	1019
BstAPI	GCANNNNNTGC	1 cut(s)	456
BstBAI	YACGTR	1 cut(s)	245
BstBI	TTCGAA	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	404, 522
BstDEI	CTNAG	2 cut(s)	43, 52
BstDSI	CCRYGG	2 cut(s)	689, 727
BstF5I	GGATG	2 cut(s)	218, 663
BstFNI	CGCG	1 cut(s)	406
BstH2I	RGCGCY	2 cut(s)	541, 721
BstHHI	GCGC	2 cut(s)	540, 720
BstKTI	GATC	5 cut(s)	218, 259, 632, 644, 889
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	5 cut(s)	215, 256, 629, 641, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	456
BstNI	CCWGG	4 cut(s)	282, 354, 765, 861
BstNSI	RCATGY	1 cut(s)	450
BstPAI	GACNNNNGTC	1 cut(s)	282
BstSCI	CCNGG	6 cut(s)	204, 280, 352, 707, 763, 859
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	221
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	2 cut(s)	629, 641
BstXI	CCANNNNNNTGG	1 cut(s)	734
BstYI	RGATCY	2 cut(s)	629, 641
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	6 cut(s)	50, 530, 726, 763, 771, 943
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	2 cut(s)	689, 727
BtsCI	GGATG	2 cut(s)	218, 663
BtsI	GCAGTG	1 cut(s)	877
BtsIMutI	CAGTG	2 cut(s)	847, 877
Cac8I	GCNNGC	2 cut(s)	404, 522
CfoI	GCGC	2 cut(s)	540, 720
Cfr13I	GGNCC	1 cut(s)	48
ClaI	ATCGAT	1 cut(s)	156
CseI	GACGC	1 cut(s)	279
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	8 cut(s)	287, 447, 667, 690, 728, 815, 824, 971
DdeI	CTNAG	2 cut(s)	43, 52
DinI	GGCGCC	1 cut(s)	539
DpnI	GATC	5 cut(s)	217, 258, 631, 643, 888
DpnII	GATC	5 cut(s)	215, 256, 629, 641, 886
EaeI	YGGCCR	2 cut(s)	528, 724
EciI	GGCGGA	1 cut(s)	956
Eco130I	CCWWGG	5 cut(s)	389, 525, 541, 689, 727
Eco147I	AGGCCT	1 cut(s)	771
Eco24I	GRGCYC	1 cut(s)	404
Eco57I	CTGAAG	2 cut(s)	27, 281
Eco72I	CACGTG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRII	CCWGG	4 cut(s)	280, 352, 763, 859
EcoT14I	CCWWGG	5 cut(s)	389, 525, 541, 689, 727
EcoT38I	GRGCYC	1 cut(s)	404
EgeI	GGCGCC	1 cut(s)	539
EheI	GGCGCC	1 cut(s)	539
ErhI	CCWWGG	5 cut(s)	389, 525, 541, 689, 727
FaeI	CATG	8 cut(s)	290, 450, 670, 693, 731, 818, 827, 974
FatI	CATG	8 cut(s)	286, 446, 666, 689, 727, 814, 823, 970
FauI	CCCGC	1 cut(s)	411
FbaI	TGATCA	1 cut(s)	886
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	2 cut(s)	205, 670
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	2 cut(s)	539, 719
GluI	GCNGC	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	744
HaeII	RGCGCY	2 cut(s)	541, 721
HaeIII	GGCC	6 cut(s)	50, 530, 726, 763, 771, 943
HapII	CCGG	3 cut(s)	206, 213, 708
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	2 cut(s)	540, 720
Hin1I	GRCGYC	2 cut(s)	538, 704
Hin1II	CATG	8 cut(s)	290, 450, 670, 693, 731, 818, 827, 974
Hin6I	GCGC	2 cut(s)	538, 718
HinP1I	GCGC	2 cut(s)	538, 718
HindIII	AAGCTT	2 cut(s)	263, 1022
HinfI	GANTC	7 cut(s)	161, 331, 662, 670, 856, 933, 1005
HpaII	CCGG	3 cut(s)	206, 213, 708
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	7 cut(s)	28, 55, 166, 261, 330, 572, 932
Hpy188III	TCNNGA	5 cut(s)	104, 113, 890, 980, 1002
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	706
HpyAV	CCTTC	4 cut(s)	33, 119, 690, 821
HpyCH4IV	ACGT	3 cut(s)	244, 704, 848
HpyCH4V	TGCA	2 cut(s)	450, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	456
HpyF3I	CTNAG	2 cut(s)	43, 52
HpySE526I	ACGT	3 cut(s)	244, 704, 848
Hsp92I	GRCGYC	2 cut(s)	538, 704
Hsp92II	CATG	8 cut(s)	290, 450, 670, 693, 731, 818, 827, 974
HspAI	GCGC	2 cut(s)	538, 718
KasI	GGCGCC	1 cut(s)	537
Ksp22I	TGATCA	1 cut(s)	886
Kzo9I	GATC	5 cut(s)	215, 256, 629, 641, 886
LmnI	GCTCC	1 cut(s)	393
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	1 cut(s)	985
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	3 cut(s)	244, 704, 848
MaeIII	GTNAC	1 cut(s)	988
MalI	GATC	5 cut(s)	217, 258, 631, 643, 888
MboI	GATC	5 cut(s)	215, 256, 629, 641, 886
MboII	GAAGA	4 cut(s)	20, 139, 291, 894
MflI	RGATCY	2 cut(s)	629, 641
MhlI	GDGCHC	1 cut(s)	404
MlsI	TGGCCA	2 cut(s)	530, 726
MluCI	AATT	1 cut(s)	894
MluNI	TGGCCA	2 cut(s)	530, 726
Mly113I	GGCGCC	1 cut(s)	538
MlyI	GAGTC	2 cut(s)	656, 999
MmeI	TCCRAC	1 cut(s)	294
Mox20I	TGGCCA	2 cut(s)	530, 726
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	2 cut(s)	530, 726
MseI	TTAA	4 cut(s)	602, 777, 1020, 1027
Msp20I	TGGCCA	2 cut(s)	530, 726
MspCI	CTTAAG	1 cut(s)	1019
MspI	CCGG	3 cut(s)	206, 213, 708
MspR9I	CCNGG	6 cut(s)	206, 282, 354, 709, 765, 861
MvaI	CCWGG	4 cut(s)	282, 354, 765, 861
MvnI	CGCG	1 cut(s)	406
MwoI	GCNNNNNNNGC	1 cut(s)	456
NarI	GGCGCC	1 cut(s)	538
NciI	CCSGG	2 cut(s)	206, 709
NcoI	CCATGG	2 cut(s)	689, 727
NdeII	GATC	5 cut(s)	215, 256, 629, 641, 886
NlaIII	CATG	8 cut(s)	290, 450, 670, 693, 731, 818, 827, 974
NlaIV	GGNNCC	4 cut(s)	49, 539, 865, 984
NspI	RCATGY	1 cut(s)	450
NspV	TTCGAA	1 cut(s)	302
PasI	CCCWGGG	1 cut(s)	353
PceI	AGGCCT	1 cut(s)	771
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	5 cut(s)	161, 331, 670, 856, 933
PflMI	CCANNNNNTGG	1 cut(s)	487
PfoI	TCCNGGA	1 cut(s)	859
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	2 cut(s)	656, 999
PluTI	GGCGCC	1 cut(s)	541
PmaCI	CACGTG	1 cut(s)	245
PmlI	CACGTG	1 cut(s)	245
PpsI	GAGTC	2 cut(s)	656, 999
Ppu21I	YACGTR	1 cut(s)	245
PshAI	GACNNNNGTC	1 cut(s)	282
PshBI	ATTAAT	1 cut(s)	777
Psp1406I	AACGTT	1 cut(s)	848
Psp6I	CCWGG	4 cut(s)	280, 352, 763, 859
PspCI	CACGTG	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	740
PspGI	CCWGG	4 cut(s)	280, 352, 763, 859
PspN4I	GGNNCC	4 cut(s)	49, 539, 865, 984
PspPI	GGNCC	1 cut(s)	48
PsuI	RGATCY	2 cut(s)	629, 641
SaqAI	TTAA	4 cut(s)	602, 777, 1020, 1027
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	5 cut(s)	215, 256, 629, 641, 886
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	2 cut(s)	656, 999
ScrFI	CCNGG	6 cut(s)	206, 282, 354, 709, 765, 861
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	9 cut(s)	111, 247, 267, 496, 707, 813, 851, 884, 1026
SfaNI	GCATC	1 cut(s)	985
SfoI	GGCGCC	1 cut(s)	539
SfuI	TTCGAA	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	1019
SmoI	CTYRAG	1 cut(s)	1019
Sse9I	AATT	1 cut(s)	894
SseBI	AGGCCT	1 cut(s)	771
SsiI	CCGC	2 cut(s)	404, 967
SspDI	GGCGCC	1 cut(s)	537
SspMI	CTAG	1 cut(s)	435
StuI	AGGCCT	1 cut(s)	771
StyD4I	CCNGG	6 cut(s)	204, 280, 352, 707, 763, 859
StyI	CCWWGG	5 cut(s)	389, 525, 541, 689, 727
TaiI	ACGT	3 cut(s)	247, 707, 851
TaqI	TCGA	4 cut(s)	156, 302, 701, 1008
TasI	AATT	1 cut(s)	894
TfiI	GAWTC	5 cut(s)	161, 331, 670, 856, 933
Tru1I	TTAA	4 cut(s)	602, 777, 1020, 1027
Tru9I	TTAA	4 cut(s)	602, 777, 1020, 1027
TscAI	CASTG	2 cut(s)	847, 877
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	7 cut(s)	140, 146, 152, 186, 330, 803, 812
TspRI	CASTG	2 cut(s)	847, 877
Van91I	CCANNNNNTGG	1 cut(s)	487
Vha464I	CTTAAG	1 cut(s)	1019
VspI	ATTAAT	1 cut(s)	777
XceI	RCATGY	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	435
ZraI	GACGTC	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.