Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005913

Physical Location & Seq

Genomic Coordinates Reverse (-)

30238969 .. 30239883

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G012850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAGATACCAGTACTAGAAGTATGCGCTAATTCTTCCGAGGCCTCGAGCATCATCTCAGCCGCCTCGGACAAGAAGAATACTATGAAGATGAAGGAGATCAACATCGCCGGCGAATCCCAACAACAACAAAAGCCAGAGGTGGTGGCGGAGGAGGCAGAAGCCAATGTTGAACTTGCACTTTTCAAGGCTAATCCGCCGGAGGAGGAGGCCTCGGAGGAGTTAAATGGCGTGCGTGGTCAACAGAAGAAAGAAAAAGAAGATACTAGGGTTTTCAAGTGCAACTTCTGCAACAGAAACTTCTCTACTTCCCAAGCCTTGGGAGGCCACCAAAACGCTCACAAACCGGAACGCCAGCTTGCAAAACGGCGTAGCCAAGGATTGGATGTGGGTGGTGGATTTGGATTAGGGCAGTCATACTATCCTTACAATTTCAGTCCATATTCTTCATCTACTCTTTCTCCACACTACTCACTTTATGGATCTAGGTCGACGTCTCTTGGTGTTAGGCTAGATTCCATGATTCATAAGCCTACTTATACCCCGTGGTACGACCGCCTAGGTGGCGGTGCGGGGTGGTCGAGGCCAGCTTCCTCAAGCCTCCTGCAGAACCACCCTATTAATGATCATAGGCTCAGCTTCCAGGGTGCTCAGAATAATATCAACACCAACGAATTAGGGCTTGGTGTACGAACATTTAATGCTTCATCAAGATTGGAGGAGAGTAGTACTAGTACTCGTGCTGTTCGCAACTTCGGTGGTACTTGGAATCTTAACGCAATCAACAACAACAACAACAAAAAGCCGCCACTGCCACCATTCAGTGGTAGTACTGATCTTCTGTCTCGAGTAGAGCGGCCCCGAAAGAATGACCAGGATGGTGACGATGACATCGATTTGACGCTTAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

304

Amino Acids

33.51

Weight (kDa)

7.02

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	91 - 116	5.7e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12011 FvH4_7g04251
malus_domestica	MD07G1042100.v1.1
prunus_persica	Prupe.2G048100_v2.0.a1 Prupe.2G048400_v2.0.a1
pyrus_communis	pycom02g23410
rosa_chinensis	RchiOBHm_Chr1g0328791
rosa_laevigata	RLG00000008539 RLG00000029918
rosa_multiflora	Rmu_co8270465.1_g000001 Rmu_sc0000652.1_g000003 Rmu_sc0004241.1_g000001 Rmu_sc0013419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321370 Rroxscaffold_5G00354150
rosa_rugosa	Rorug01G0075900 Rorug04G0095500
rosa_samantha	Rh1AG094600 Rh1BG075500 Rh1CG091900 Rh1DG097900 Rh4AG157200 Rh4BG156700 Rh4CG167200 Rh4DG150900
rosa_wichuraiana	Rw1G007380 Rw4G012850 Rw4G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	497
AccB7I	CCANNNNNTGG	3 cut(s)	319, 382, 824
AccBSI	CCGCTC	1 cut(s)	856
AccI	GTMKAC	1 cut(s)	491
AciI	CCGC	8 cut(s)	63, 149, 197, 556, 567, 572, 806, 856
AclWI	GGATC	1 cut(s)	490
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	7 cut(s)	15, 551, 690, 730, 736, 763, 832
AfiI	CCNNNNNNNGG	3 cut(s)	319, 382, 824
AflII	CTTAAG	1 cut(s)	905
AgsI	TTSAA	3 cut(s)	173, 187, 277
AhlI	ACTAGT	1 cut(s)	731
AjnI	CCWGG	2 cut(s)	642, 873
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AluBI	AGCT	4 cut(s)	358, 590, 639, 910
AluI	AGCT	4 cut(s)	358, 590, 639, 910
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	2 cut(s)	501, 849
AlwI	GGATC	1 cut(s)	490
Ama87I	CYCGRG	2 cut(s)	46, 846
AoxI	GGCC	5 cut(s)	42, 210, 325, 584, 857
AseI	ATTAAT	1 cut(s)	621
AspA2I	CCTAGG	1 cut(s)	559
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	858
AsuHPI	GGTGA	1 cut(s)	893
AvaI	CYCGRG	2 cut(s)	46, 846
AvrII	CCTAGG	1 cut(s)	559
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BauI	CACGAG	1 cut(s)	738
Bbv12I	GWGCWC	1 cut(s)	652
BccI	CCATC	1 cut(s)	872
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	2 cut(s)	644, 875
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	501, 849
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	6 cut(s)	17, 267, 486, 512, 560, 732
BfmI	CTRYAG	1 cut(s)	605
BfrI	CTTAAG	1 cut(s)	905
BglI	GCCNNNNNGGC	1 cut(s)	564
BisI	GCNGC	3 cut(s)	63, 806, 857
BlnI	CCTAGG	1 cut(s)	559
BlpI	GCTNAGC	1 cut(s)	635
BlsI	GCNGC	3 cut(s)	64, 807, 858
BmcAI	AGTACT	4 cut(s)	15, 730, 736, 832
Bme1390I	CCNGG	2 cut(s)	644, 875
BmeT110I	CYCGRG	2 cut(s)	46, 846
BmgT120I	GGNCC	1 cut(s)	858
BmiI	GGNNCC	1 cut(s)	860
BmrFI	CCNGG	2 cut(s)	644, 875
BmsI	GCATC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
Bpu1102I	GCTNAGC	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	580
Bsa29I	ATCGAT	1 cut(s)	894
BsaBI	GATNNNNATC	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	8 cut(s)	39, 66, 213, 318, 376, 545, 559, 643
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 382, 824
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	644, 875
BseCI	ATCGAT	1 cut(s)	894
BseDI	CCNNGG	8 cut(s)	39, 66, 213, 318, 376, 545, 559, 643
BseGI	GGATG	2 cut(s)	391, 883
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	3 cut(s)	319, 382, 824
BseMII	CTCAG	3 cut(s)	72, 649, 665
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	5 cut(s)	167, 218, 221, 233, 734
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	5 cut(s)	44, 212, 327, 586, 859
BshVI	ATCGAT	1 cut(s)	894
BsiEI	CGRYCG	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	652
BsiHKCI	CYCGRG	2 cut(s)	46, 846
BsiSI	CCGG	3 cut(s)	111, 200, 347
BslI	CCNNNNNNNGG	3 cut(s)	319, 382, 824
BsmAI	GTCTC	2 cut(s)	501, 849
BsmBI	CGTCTC	1 cut(s)	501
BsnI	GGCC	5 cut(s)	44, 212, 327, 586, 859
BsoBI	CYCGRG	2 cut(s)	46, 846
Bsp1286I	GDGCHC	1 cut(s)	652
Bsp143I	GATC	4 cut(s)	99, 482, 625, 835
Bsp1720I	GCTNAGC	1 cut(s)	635
BspACI	CCGC	8 cut(s)	63, 149, 197, 556, 567, 572, 806, 856
BspANI	GGCC	5 cut(s)	44, 212, 327, 586, 859
BspCNI	CTCAG	3 cut(s)	71, 648, 664
BspDI	ATCGAT	1 cut(s)	894
BspLI	GGNNCC	1 cut(s)	860
BspMAI	CTGCAG	1 cut(s)	609
BspPI	GGATC	1 cut(s)	490
BspTI	CTTAAG	1 cut(s)	905
BsrBI	CCGCTC	1 cut(s)	856
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	8 cut(s)	39, 66, 213, 318, 376, 545, 559, 643
BssMI	GATC	4 cut(s)	99, 482, 625, 835
BssNI	GRCGYC	1 cut(s)	494
BssSI	CACGAG	1 cut(s)	738
BssT1I	CCWWGG	3 cut(s)	318, 376, 559
Bst2BI	CACGAG	1 cut(s)	738
Bst2UI	CCWGG	2 cut(s)	644, 875
BstACI	GRCGYC	1 cut(s)	494
BstAFI	CTTAAG	1 cut(s)	905
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstC8I	GCNNGC	5 cut(s)	112, 233, 356, 360, 588
BstDEI	CTNAG	3 cut(s)	58, 635, 651
BstDSI	CCRYGG	1 cut(s)	545
BstF5I	GGATG	2 cut(s)	391, 883
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	4 cut(s)	102, 485, 628, 838
BstMAI	GTCTC	2 cut(s)	501, 849
BstMBI	GATC	4 cut(s)	99, 482, 625, 835
BstMCI	CGRYCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 288, 564, 811
BstNI	CCWGG	2 cut(s)	644, 875
BstSCI	CCNGG	2 cut(s)	642, 873
BstSFI	CTRYAG	1 cut(s)	605
BstX2I	RGATCY	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	482
Bsu15I	ATCGAT	1 cut(s)	894
BsuRI	GGCC	5 cut(s)	44, 212, 327, 586, 859
BsuTUI	ATCGAT	1 cut(s)	894
BtgI	CCRYGG	1 cut(s)	545
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	391, 883
BtsI	GCAGTG	1 cut(s)	809
BtsIMutI	CAGTG	2 cut(s)	809, 829
Cac8I	GCNNGC	5 cut(s)	112, 233, 356, 360, 588
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	858
ClaI	ATCGAT	1 cut(s)	894
CseI	GACGC	1 cut(s)	910
Csp6I	GTAC	7 cut(s)	14, 550, 689, 729, 735, 762, 831
CspCI	CAANNNNNGTGG	2 cut(s)	739, 774
CviAII	CATG	1 cut(s)	520
CviQI	GTAC	7 cut(s)	14, 550, 689, 729, 735, 762, 831
DdeI	CTNAG	3 cut(s)	58, 635, 651
DpnI	GATC	4 cut(s)	101, 484, 627, 837
DpnII	GATC	4 cut(s)	99, 482, 625, 835
EciI	GGCGGA	2 cut(s)	164, 186
Eco130I	CCWWGG	3 cut(s)	318, 376, 559
Eco147I	AGGCCT	2 cut(s)	44, 212
Eco88I	CYCGRG	2 cut(s)	46, 846
EcoRII	CCWGG	2 cut(s)	642, 873
EcoT14I	CCWWGG	3 cut(s)	318, 376, 559
ErhI	CCWWGG	3 cut(s)	318, 376, 559
Esp3I	CGTCTC	1 cut(s)	501
FaeI	CATG	1 cut(s)	523
FaiI	YATR	9 cut(s)	25, 86, 418, 442, 480, 521, 528, 540, 630
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	1 cut(s)	519
FauI	CCCGC	1 cut(s)	565
FbaI	TGATCA	1 cut(s)	625
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	3 cut(s)	63, 806, 857
FokI	GGATG	2 cut(s)	398, 890
Fsp4HI	GCNGC	3 cut(s)	63, 806, 857
FspBI	CTAG	6 cut(s)	17, 267, 486, 512, 560, 732
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	3 cut(s)	63, 806, 857
HaeIII	GGCC	5 cut(s)	44, 212, 327, 586, 859
HapII	CCGG	3 cut(s)	111, 200, 347
HgaI	GACGC	1 cut(s)	910
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	1 cut(s)	523
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	2 cut(s)	242, 492
HindII	GTYRAC	2 cut(s)	242, 492
HindIII	AAGCTT	1 cut(s)	908
HinfI	GANTC	4 cut(s)	116, 515, 523, 769
HpaII	CCGG	3 cut(s)	111, 200, 347
HphI	GGTGA	1 cut(s)	893
Hpy166II	GTNNAC	3 cut(s)	242, 492, 689
Hpy188I	TCNGA	4 cut(s)	40, 70, 217, 654
Hpy188III	TCNNGA	2 cut(s)	711, 846
Hpy8I	GTNNAC	3 cut(s)	242, 492, 689
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	5 cut(s)	179, 282, 291, 362, 607
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 288, 564, 811
HpyF3I	CTNAG	3 cut(s)	58, 635, 651
HpySE526I	ACGT	1 cut(s)	494
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	1 cut(s)	523
HspAI	GCGC	1 cut(s)	27
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	4 cut(s)	99, 482, 625, 835
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	6 cut(s)	17, 267, 486, 512, 560, 732
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	1 cut(s)	881
MalI	GATC	4 cut(s)	101, 484, 627, 837
MbiI	CCGCTC	1 cut(s)	856
MboI	GATC	4 cut(s)	99, 482, 625, 835
MboII	GAAGA	7 cut(s)	27, 88, 100, 259, 272, 438, 830
MflI	RGATCY	1 cut(s)	482
MhlI	GDGCHC	1 cut(s)	652
MluCI	AATT	3 cut(s)	31, 430, 674
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	6 cut(s)	224, 621, 699, 774, 906, 913
MspCI	CTTAAG	1 cut(s)	905
MspI	CCGG	3 cut(s)	111, 200, 347
MspR9I	CCNGG	2 cut(s)	644, 875
MvaI	CCWGG	2 cut(s)	644, 875
MwoI	GCNNNNNNNGC	4 cut(s)	155, 288, 564, 811
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	4 cut(s)	99, 482, 625, 835
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	1 cut(s)	860
NmuCI	GTSAC	1 cut(s)	881
PaeR7I	CTCGAG	2 cut(s)	46, 846
PceI	AGGCCT	2 cut(s)	44, 212
PcsI	WCGNNNNNNNCGW	1 cut(s)	891
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	4 cut(s)	116, 515, 523, 769
PflMI	CCANNNNNTGG	3 cut(s)	319, 382, 824
PkrI	GCNGC	3 cut(s)	64, 807, 858
PshBI	ATTAAT	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	642, 873
PspGI	CCWGG	2 cut(s)	642, 873
PspN4I	GGNNCC	1 cut(s)	860
PspPI	GGNCC	1 cut(s)	858
PspXI	VCTCGAGB	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	609
PsuI	RGATCY	1 cut(s)	482
RsaI	GTAC	7 cut(s)	15, 551, 690, 730, 736, 763, 832
RsaNI	GTAC	7 cut(s)	14, 550, 689, 729, 735, 762, 831
SalI	GTCGAC	1 cut(s)	490
SaqAI	TTAA	6 cut(s)	224, 621, 699, 774, 906, 913
SatI	GCNGC	3 cut(s)	63, 806, 857
Sau3AI	GATC	4 cut(s)	99, 482, 625, 835
Sau96I	GGNCC	1 cut(s)	858
ScaI	AGTACT	4 cut(s)	15, 730, 736, 832
ScrFI	CCNGG	2 cut(s)	644, 875
SduI	GDGCHC	1 cut(s)	652
SetI	ASST	8 cut(s)	144, 360, 491, 497, 565, 592, 641, 912
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	605
Sfr274I	CTCGAG	2 cut(s)	46, 846
SgrAI	CRCCGGYG	1 cut(s)	110
SlaI	CTCGAG	2 cut(s)	46, 846
SmlI	CTYRAG	4 cut(s)	46, 595, 846, 905
SmoI	CTYRAG	4 cut(s)	46, 595, 846, 905
SpeI	ACTAGT	1 cut(s)	731
Sse9I	AATT	3 cut(s)	31, 430, 674
SseBI	AGGCCT	2 cut(s)	44, 212
SsiI	CCGC	8 cut(s)	63, 149, 197, 556, 567, 572, 806, 856
SspMI	CTAG	6 cut(s)	17, 267, 486, 512, 560, 732
StuI	AGGCCT	2 cut(s)	44, 212
StyD4I	CCNGG	2 cut(s)	642, 873
StyI	CCWWGG	3 cut(s)	318, 376, 559
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	5 cut(s)	47, 491, 581, 847, 894
TasI	AATT	3 cut(s)	31, 430, 674
TatI	WGTACW	4 cut(s)	13, 728, 734, 830
TauI	GCSGC	3 cut(s)	65, 808, 859
TfiI	GAWTC	4 cut(s)	116, 515, 523, 769
Tru1I	TTAA	6 cut(s)	224, 621, 699, 774, 906, 913
Tru9I	TTAA	6 cut(s)	224, 621, 699, 774, 906, 913
TscAI	CASTG	2 cut(s)	816, 829
TseFI	GTSAC	1 cut(s)	881
Tsp45I	GTSAC	1 cut(s)	881
TspDTI	ATGAA	5 cut(s)	101, 107, 438, 515, 696
TspRI	CASTG	2 cut(s)	816, 829
Van91I	CCANNNNNTGG	3 cut(s)	319, 382, 824
Vha464I	CTTAAG	1 cut(s)	905
VspI	ATTAAT	1 cut(s)	621
XhoI	CTCGAG	2 cut(s)	46, 846
XmaJI	CCTAGG	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	491
XspI	CTAG	6 cut(s)	17, 267, 486, 512, 560, 732
ZraI	GACGTC	1 cut(s)	495
ZrmI	AGTACT	4 cut(s)	15, 730, 736, 832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.