Rmu_co8270465.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8270465.1
OG0005913
Physical Location & Seq
Forward (+)
475 .. 827
353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8270465.1_g000001.1.cds

Sequence Viewer

Length: 353 bp
atgaagaaaccaggtgcagtggaagcatgtcctttggagtcccaggttgcctctgaagtaccaccatcgccttcttcgcttcccaaagaaggtggtgatggtgatgacaagagcaatatgaagatgaaggagaaagtaattgtcttaatagacgagccccaacaatcactagagaaggagaaggaggctgcggtgggtggatccaccagctctggtgtggtgcatgatatgacaccttccaaccagggtccgccgggtggatccaatctagaactcgctcttttcaactcttcgtcgtctcagttagtaccagaggtggtggaggtggaggagggctcagacgagaacccagc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.22

Weight (kDa)

4.31

Isoelectric Point (pI)

61.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 191, 251
AclWI GGATC 4 cut(s) 195, 208, 255, 268
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 2 cut(s) 60, 309
AfiI CCNNNNNNNGG 2 cut(s) 89, 257
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 3 cut(s) 10, 42, 243
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 4 cut(s) 195, 208, 255, 268
ApeKI GCWGC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 107, 113
AvaII GGWCC 1 cut(s) 248
BamHI GGATCC 2 cut(s) 200, 260
BanII GRGCYC 2 cut(s) 159, 338
BbvI GCAGC 1 cut(s) 175
BccI CCATC 2 cut(s) 73, 92
BciT130I CCWGG 3 cut(s) 12, 44, 245
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 2 cut(s) 170, 269
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 4 cut(s) 12, 44, 245, 255
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 3 cut(s) 202, 249, 262
BmrFI CCNGG 4 cut(s) 12, 44, 245, 255
BplI GAGNNNNNCTC 2 cut(s) 320, 352
BpuMI CCSGG 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 42, 244
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 257
BseBI CCWGG 3 cut(s) 12, 44, 245
BseDI CCNNGG 2 cut(s) 42, 244
BseLI CCNNNNNNNGG 2 cut(s) 89, 257
BseMII CTCAG 2 cut(s) 314, 351
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 175
BseYI CCCAGC 1 cut(s) 349
BsgI GTGCAG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 89, 257
BsmAI GTCTC 1 cut(s) 303
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 159, 338
Bsp143I GATC 2 cut(s) 200, 260
BspACI CCGC 2 cut(s) 191, 251
BspCNI CTCAG 2 cut(s) 313, 350
BspLI GGNNCC 3 cut(s) 202, 249, 262
BspPI GGATC 4 cut(s) 195, 208, 255, 268
BssECI CCNNGG 2 cut(s) 42, 244
BssMI GATC 2 cut(s) 200, 260
Bst2UI CCWGG 3 cut(s) 12, 44, 245
Bst6I CTCTTC 1 cut(s) 295
BstDEI CTNAG 2 cut(s) 300, 337
BstKTI GATC 2 cut(s) 203, 263
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 2 cut(s) 200, 260
BstMWI GCNNNNNNNGC 2 cut(s) 23, 76
BstNI CCWGG 3 cut(s) 12, 44, 245
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 4 cut(s) 10, 42, 243, 253
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 2 cut(s) 200, 260
BstYI RGATCY 2 cut(s) 200, 260
BtgZI GCGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 248
CsiI ACCWGGT 1 cut(s) 10
Csp6I GTAC 2 cut(s) 59, 308
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 2 cut(s) 27, 224
CviJI RGCY 4 cut(s) 157, 188, 210, 336
CviKI_1 RGCY 4 cut(s) 157, 188, 210, 336
CviQI GTAC 2 cut(s) 59, 308
DdeI CTNAG 2 cut(s) 300, 337
DpnI GATC 2 cut(s) 202, 262
DpnII GATC 2 cut(s) 200, 260
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
EciI GGCGGA 1 cut(s) 240
Eco24I GRGCYC 2 cut(s) 159, 338
Eco47I GGWCC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 75
EcoRII CCWGG 3 cut(s) 10, 42, 243
EcoT38I GRGCYC 2 cut(s) 159, 338
Esp3I CGTCTC 1 cut(s) 303
FaeI CATG 2 cut(s) 30, 227
FaiI YATR 4 cut(s) 28, 119, 225, 230
FaqI GGGAC 1 cut(s) 25
FatI CATG 2 cut(s) 26, 223
Fnu4HI GCNGC 1 cut(s) 189
FriOI GRGCYC 2 cut(s) 159, 338
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 170, 269
GluI GCNGC 1 cut(s) 189
GsaI CCCAGC 1 cut(s) 353
HapII CCGG 1 cut(s) 254
Hin1II CATG 2 cut(s) 30, 227
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 107, 113
Hpy188I TCNGA 2 cut(s) 55, 340
Hpy188III TCNNGA 1 cut(s) 269
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 6 cut(s) 81, 83, 121, 169, 175, 246
HpyCH4V TGCA 2 cut(s) 17, 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 76
HpyF3I CTNAG 2 cut(s) 300, 337
Hsp92II CATG 2 cut(s) 30, 227
Kzo9I GATC 2 cut(s) 200, 260
LpnPI CCDG 9 cut(s) 24, 29, 56, 198, 220, 230, 257, 267, 324
Lsp1109I GCAGC 1 cut(s) 175
MabI ACCWGGT 1 cut(s) 10
MaeI CTAG 2 cut(s) 170, 269
MalI GATC 2 cut(s) 202, 262
MboI GATC 2 cut(s) 200, 260
MboII GAAGA 4 cut(s) 16, 66, 133, 282
MflI RGATCY 2 cut(s) 200, 260
MhlI GDGCHC 2 cut(s) 159, 338
MluCI AATT 1 cut(s) 138
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 6 cut(s) 61, 178, 307, 316, 322, 325
MseI TTAA 1 cut(s) 146
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 4 cut(s) 12, 44, 245, 255
MvaI CCWGG 3 cut(s) 12, 44, 245
MwoI GCNNNNNNNGC 2 cut(s) 23, 76
NciI CCSGG 1 cut(s) 255
NdeII GATC 2 cut(s) 200, 260
NlaIII CATG 2 cut(s) 30, 227
NlaIV GGNNCC 3 cut(s) 202, 249, 262
NspI RCATGY 1 cut(s) 30
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp6I CCWGG 3 cut(s) 10, 42, 243
PspFI CCCAGC 1 cut(s) 349
PspGI CCWGG 3 cut(s) 10, 42, 243
PspN4I GGNNCC 3 cut(s) 202, 249, 262
PspPI GGNCC 1 cut(s) 248
PsuI RGATCY 2 cut(s) 200, 260
RsaI GTAC 2 cut(s) 60, 309
RsaNI GTAC 2 cut(s) 59, 308
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 2 cut(s) 200, 260
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 4 cut(s) 12, 44, 245, 255
SduI GDGCHC 2 cut(s) 159, 338
SetI ASST 7 cut(s) 16, 48, 94, 212, 238, 318, 327
SexAI ACCWGGT 1 cut(s) 10
SinI GGWCC 1 cut(s) 248
Sse9I AATT 1 cut(s) 138
SsiI CCGC 2 cut(s) 191, 251
SspMI CTAG 2 cut(s) 170, 269
StyD4I CCNGG 4 cut(s) 10, 42, 243, 253
TasI AATT 1 cut(s) 138
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 17, 134, 140
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 248
XbaI TCTAGA 1 cut(s) 268
XceI RCATGY 1 cut(s) 30
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XspI CTAG 2 cut(s) 170, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.