Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005913

Physical Location & Seq

Genomic Coordinates Forward (+)

16496424 .. 16499614

Gene Structure 3191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG094600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAAAATACACATAAAACCAGGTGCAGTGGAAGCATGTCCTTTGGAGTCCCAGGTTGCCTCTGAAGTACCACCATCGCCTTCTTCGCTTCCCAAAGAAGGTGGCGATGGTGATGACAAGAGCAATATGAAGATGAAGGAGAAAGTAATTGTCTTAATAGACGAGCCCCAACAATCACTAGAGAAGGAGAAGGAGGCTGCGGTGGGTGGATCCACCAGCTCTGGTGTGGTGCTTGATATGACACCTTCCAACCAGGGTCCGCCGGGTGGATCCAATCTAGAACTCGCTCTTTTCAACTCTTCGTCGTCTCAGTTAGTACCAGAGGTGGTGGAGGTGGAGGAGGGCTCAGACGAGAACCCGGCGGCGCGTGATCAGAAAAAGGAGCCCAGGGTTTTCAAATGCAACTTCTGCCAGAGAAAGTTCTCGACCTCCCAGGCCTTGGGAGGGCACCAGAACGCCCACAAGCAGGAGCGCCAGCTGGCGAAACGGCGGAGTCAAGCTTTTGATCATATGGGTGGATTAGGGAACTCGCACTTTCCTTATTACAGCCCATATTCAGGCTTCTCCACACACTCTCTCTATGGATCTTACAACAGGTCTTCTCTTGGTGTCAGAATGGACTCCATGATTCATAAACCTTCTTATACCCCGTGGTCCCAAACTTACGGCCGCTTTGGCCTTGCCCTCGGCGGTGCTGCCAGCGGCCTCGGTGGAGGCGCTTCTGGCTGGTCGCGGCCAGGCTCGAGCCTCATCAACTGTATTGATCAACATAGGCTAACCTCCTTGCAAGGCCTCCAGAATAATATCAATGAATTAGGGCTTGCTGGACGAACTGCTACCGCTCCAAGATTCGAGCAGGGGAGTACTAGTGGTCTTCAAAACTTTGGTGGTTCAAATCTGTCAGCTCTCAACAACAGGGTGCCGCCAACAAATGGTGCTGATCTTCTCCGACAAGCAGAGCCTCCTCAATGTGATACCGATGAGTTCAAGGAGAAAAACCTCAGTGAGAAACAAACCCACCGAGGCAAAAATAGAGTCGGTTATTTTGATCGGGCTTTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

354

Amino Acids

38.11

Weight (kDa)

7.68

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12011 FvH4_7g04251
malus_domestica	MD07G1042100.v1.1
prunus_persica	Prupe.2G048100_v2.0.a1 Prupe.2G048400_v2.0.a1
pyrus_communis	pycom02g23410
rosa_chinensis	RchiOBHm_Chr1g0328791
rosa_laevigata	RLG00000008539 RLG00000029918
rosa_multiflora	Rmu_co8270465.1_g000001 Rmu_sc0000652.1_g000003 Rmu_sc0004241.1_g000001 Rmu_sc0013419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321370 Rroxscaffold_5G00354150
rosa_rugosa	Rorug01G0075900 Rorug04G0095500
rosa_samantha	Rh1AG094600 Rh1BG075500 Rh1CG091900 Rh1DG097900 Rh4AG157200 Rh4BG156700 Rh4CG167200 Rh4DG150900
rosa_wichuraiana	Rw1G007380 Rw4G012850 Rw4G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	447, 919
AccB7I	CCANNNNNTGG	2 cut(s)	439, 932
AccBSI	CCGCTC	1 cut(s)	842
AccII	CGCG	2 cut(s)	367, 733
AclWI	GGATC	5 cut(s)	204, 217, 264, 277, 592
AcoI	YGGCCR	2 cut(s)	667, 734
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	3 cut(s)	69, 318, 865
AfiI	CCNNNNNNNGG	7 cut(s)	98, 266, 439, 444, 466, 557, 932
AgsI	TTSAA	5 cut(s)	295, 397, 878, 894, 988
AhlI	ACTAGT	1 cut(s)	866
AjnI	CCWGG	6 cut(s)	19, 51, 252, 386, 432, 736
AluBI	AGCT	4 cut(s)	219, 478, 500, 905
AluI	AGCT	4 cut(s)	219, 478, 500, 905
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	5 cut(s)	204, 217, 264, 277, 592
Ama87I	CYCGRG	1 cut(s)	742
AoxI	GGCC	6 cut(s)	435, 667, 676, 703, 734, 790
ApeKI	GCWGC	2 cut(s)	197, 695
ArsI	GACNNNNNNTTYG	2 cut(s)	1020, 1052
AspLEI	GCGC	3 cut(s)	367, 474, 719
AspS9I	GGNCC	2 cut(s)	257, 654
AsuC2I	CCSGG	2 cut(s)	264, 359
AsuHPI	GGTGA	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	742
AvaII	GGWCC	2 cut(s)	257, 654
BaeGI	GKGCMC	1 cut(s)	450
BamHI	GGATCC	2 cut(s)	209, 269
BanI	GGYRCC	2 cut(s)	447, 919
BanII	GRGCYC	3 cut(s)	168, 347, 387
BbsI	GAAGAC	2 cut(s)	591, 866
BbvI	GCAGC	2 cut(s)	184, 682
BccI	CCATC	2 cut(s)	82, 101
BceAI	ACGGC	2 cut(s)	503, 682
BciT130I	CCWGG	6 cut(s)	21, 53, 254, 388, 434, 738
BclI	TGATCA	3 cut(s)	370, 505, 763
BcnI	CCSGG	2 cut(s)	264, 359
BcoDI	GTCTC	1 cut(s)	312
BcuI	ACTAGT	1 cut(s)	866
BfaI	CTAG	3 cut(s)	179, 278, 867
BfoI	RGCGCY	2 cut(s)	475, 720
BglI	GCCNNNNNGGC	1 cut(s)	675
BisI	GCNGC	7 cut(s)	198, 363, 670, 696, 703, 734, 923
BlsI	GCNGC	7 cut(s)	199, 364, 671, 697, 704, 735, 924
BmcAI	AGTACT	1 cut(s)	865
Bme1390I	CCNGG	8 cut(s)	21, 53, 254, 264, 359, 388, 434, 738
Bme18I	GGWCC	2 cut(s)	257, 654
BmeT110I	CYCGRG	1 cut(s)	742
BmgT120I	GGNCC	2 cut(s)	257, 654
BmiI	GGNNCC	7 cut(s)	211, 258, 271, 384, 449, 656, 921
BmrFI	CCNGG	8 cut(s)	21, 53, 254, 264, 359, 388, 434, 738
BpiI	GAAGAC	2 cut(s)	591, 866
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpmI	CTGGAG	1 cut(s)	779
BpuMI	CCSGG	2 cut(s)	264, 359
BsaXI	ACNNNNNCTCC	2 cut(s)	853, 883
Bsc4I	CCNNNNNNNGG	7 cut(s)	98, 266, 439, 444, 466, 557, 932
BseBI	CCWGG	6 cut(s)	21, 53, 254, 388, 434, 738
BseLI	CCNNNNNNNGG	7 cut(s)	98, 266, 439, 444, 466, 557, 932
BseMII	CTCAG	3 cut(s)	323, 360, 1015
BseRI	GAGGAG	2 cut(s)	353, 954
BseSI	GKGCMC	1 cut(s)	450
BseX3I	CGGCCG	1 cut(s)	667
BseXI	GCAGC	2 cut(s)	184, 682
BsgI	GTGCAG	1 cut(s)	45
Bsh1236I	CGCG	2 cut(s)	367, 733
Bsh1285I	CGRYCG	1 cut(s)	670
BshFI	GGCC	6 cut(s)	437, 669, 678, 705, 736, 792
BshNI	GGYRCC	2 cut(s)	447, 919
BsiEI	CGRYCG	1 cut(s)	670
BsiHKCI	CYCGRG	1 cut(s)	742
BsiSI	CCGG	2 cut(s)	263, 359
BslFI	GGGAC	2 cut(s)	34, 640
BslI	CCNNNNNNNGG	7 cut(s)	98, 266, 439, 444, 466, 557, 932
BsmAI	GTCTC	1 cut(s)	312
BsmBI	CGTCTC	1 cut(s)	312
BsmFI	GGGAC	2 cut(s)	34, 640
BsnI	GGCC	6 cut(s)	437, 669, 678, 705, 736, 792
BsoBI	CYCGRG	1 cut(s)	742
Bsp1286I	GDGCHC	4 cut(s)	168, 347, 387, 450
Bsp143I	GATC	8 cut(s)	209, 269, 370, 505, 584, 763, 940, 1048
BspANI	GGCC	6 cut(s)	437, 669, 678, 705, 736, 792
BspCNI	CTCAG	3 cut(s)	322, 359, 1014
BspFNI	CGCG	2 cut(s)	367, 733
BspLI	GGNNCC	7 cut(s)	211, 258, 271, 384, 449, 656, 921
BspPI	GGATC	5 cut(s)	204, 217, 264, 277, 592
BspT107I	GGYRCC	2 cut(s)	447, 919
BsrBI	CCGCTC	1 cut(s)	842
BssMI	GATC	8 cut(s)	209, 269, 370, 505, 584, 763, 940, 1048
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	6 cut(s)	21, 53, 254, 388, 434, 738
Bst4CI	ACNGT	1 cut(s)	758
Bst6I	CTCTTC	1 cut(s)	304
BstAPI	GCANNNNNTGC	1 cut(s)	408
BstC8I	GCNNGC	4 cut(s)	476, 480, 700, 822
BstDEI	CTNAG	3 cut(s)	309, 346, 1001
BstDSI	CCRYGG	1 cut(s)	650
BstFNI	CGCG	2 cut(s)	367, 733
BstH2I	RGCGCY	2 cut(s)	475, 720
BstHHI	GCGC	3 cut(s)	367, 474, 719
BstKTI	GATC	8 cut(s)	212, 272, 373, 508, 587, 766, 943, 1051
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	8 cut(s)	209, 269, 370, 505, 584, 763, 940, 1048
BstMCI	CGRYCG	1 cut(s)	670
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 85, 408, 675, 723
BstNI	CCWGG	6 cut(s)	21, 53, 254, 388, 434, 738
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	8 cut(s)	19, 51, 252, 262, 357, 386, 432, 736
BstSLI	GKGCMC	1 cut(s)	450
BstUI	CGCG	2 cut(s)	367, 733
BstV1I	GCAGC	2 cut(s)	184, 682
BstV2I	GAAGAC	2 cut(s)	591, 866
BstX2I	RGATCY	3 cut(s)	209, 269, 584
BstYI	RGATCY	3 cut(s)	209, 269, 584
BstZI	CGGCCG	1 cut(s)	667
BsuRI	GGCC	6 cut(s)	437, 669, 678, 705, 736, 792
BtgI	CCRYGG	1 cut(s)	650
BtgZI	GCGATG	2 cut(s)	60, 120
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	33, 1009
Cac8I	GCNNGC	4 cut(s)	476, 480, 700, 822
CfoI	GCGC	3 cut(s)	367, 474, 719
Cfr13I	GGNCC	2 cut(s)	257, 654
CsiI	ACCWGGT	1 cut(s)	19
Csp6I	GTAC	3 cut(s)	68, 317, 864
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	2 cut(s)	36, 625
CviQI	GTAC	3 cut(s)	68, 317, 864
DdeI	CTNAG	3 cut(s)	309, 346, 1001
DpnI	GATC	8 cut(s)	211, 271, 372, 507, 586, 765, 942, 1050
DpnII	GATC	8 cut(s)	209, 269, 370, 505, 584, 763, 940, 1048
EaeI	YGGCCR	2 cut(s)	667, 734
EagI	CGGCCG	1 cut(s)	667
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
EciI	GGCGGA	2 cut(s)	249, 505
EclXI	CGGCCG	1 cut(s)	667
Eco130I	CCWWGG	1 cut(s)	438
Eco147I	AGGCCT	2 cut(s)	437, 792
Eco24I	GRGCYC	3 cut(s)	168, 347, 387
Eco47I	GGWCC	2 cut(s)	257, 654
Eco52I	CGGCCG	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	742
EcoRII	CCWGG	6 cut(s)	19, 51, 252, 386, 432, 736
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	3 cut(s)	168, 347, 387
ErhI	CCWWGG	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	2 cut(s)	39, 628
FaqI	GGGAC	2 cut(s)	34, 640
FatI	CATG	2 cut(s)	35, 624
FauNDI	CATATG	1 cut(s)	510
FbaI	TGATCA	3 cut(s)	370, 505, 763
Fnu4HI	GCNGC	7 cut(s)	198, 363, 670, 696, 703, 734, 923
FriOI	GRGCYC	3 cut(s)	168, 347, 387
Fsp4HI	GCNGC	7 cut(s)	198, 363, 670, 696, 703, 734, 923
FspBI	CTAG	3 cut(s)	179, 278, 867
GlaI	GCGC	3 cut(s)	366, 473, 718
GluI	GCNGC	7 cut(s)	198, 363, 670, 696, 703, 734, 923
GsuI	CTGGAG	1 cut(s)	779
HaeII	RGCGCY	2 cut(s)	475, 720
HaeIII	GGCC	6 cut(s)	437, 669, 678, 705, 736, 792
HapII	CCGG	2 cut(s)	263, 359
HhaI	GCGC	3 cut(s)	367, 474, 719
Hin1II	CATG	2 cut(s)	39, 628
Hin6I	GCGC	3 cut(s)	365, 472, 717
HinP1I	GCGC	3 cut(s)	365, 472, 717
HindIII	AAGCTT	1 cut(s)	498
HinfI	GANTC	6 cut(s)	47, 493, 620, 628, 849, 1035
HpaII	CCGG	2 cut(s)	263, 359
HphI	GGTGA	1 cut(s)	122
Hpy188I	TCNGA	5 cut(s)	64, 349, 375, 614, 950
Hpy188III	TCNNGA	3 cut(s)	278, 424, 796
Hpy99I	CGWCG	1 cut(s)	307
HpyAV	CCTTC	7 cut(s)	90, 92, 130, 178, 184, 255, 648
HpyCH4III	ACNGT	1 cut(s)	758
HpyCH4V	TGCA	3 cut(s)	26, 402, 787
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 85, 408, 675, 723
HpyF3I	CTNAG	3 cut(s)	309, 346, 1001
Hsp92II	CATG	2 cut(s)	39, 628
HspAI	GCGC	3 cut(s)	365, 472, 717
Ksp22I	TGATCA	3 cut(s)	370, 505, 763
Kzo9I	GATC	8 cut(s)	209, 269, 370, 505, 584, 763, 940, 1048
LmnI	GCTCC	3 cut(s)	382, 469, 847
Lsp1109I	GCAGC	2 cut(s)	184, 682
MabI	ACCWGGT	1 cut(s)	19
MaeI	CTAG	3 cut(s)	179, 278, 867
MalI	GATC	8 cut(s)	211, 271, 372, 507, 586, 765, 942, 1050
MbiI	CCGCTC	1 cut(s)	842
MboI	GATC	8 cut(s)	209, 269, 370, 505, 584, 763, 940, 1048
MboII	GAAGA	6 cut(s)	75, 142, 291, 591, 866, 935
MflI	RGATCY	3 cut(s)	209, 269, 584
MhlI	GDGCHC	4 cut(s)	168, 347, 387, 450
MluCI	AATT	2 cut(s)	147, 812
MlyI	GAGTC	4 cut(s)	56, 502, 614, 1044
MmeI	TCCRAC	2 cut(s)	273, 973
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	513
MspA1I	CMGCKG	2 cut(s)	478, 702
MspI	CCGG	2 cut(s)	263, 359
MspR9I	CCNGG	8 cut(s)	21, 53, 254, 264, 359, 388, 434, 738
MvaI	CCWGG	6 cut(s)	21, 53, 254, 388, 434, 738
MvnI	CGCG	2 cut(s)	367, 733
MwoI	GCNNNNNNNGC	5 cut(s)	32, 85, 408, 675, 723
NciI	CCSGG	2 cut(s)	264, 359
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	8 cut(s)	209, 269, 370, 505, 584, 763, 940, 1048
NlaIII	CATG	2 cut(s)	39, 628
NlaIV	GGNNCC	7 cut(s)	211, 258, 271, 384, 449, 656, 921
NmeAIII	GCCGAG	1 cut(s)	666
NspI	RCATGY	1 cut(s)	39
PaeR7I	CTCGAG	1 cut(s)	742
PasI	CCCWGGG	1 cut(s)	387
PceI	AGGCCT	2 cut(s)	437, 792
PfeI	GAWTC	2 cut(s)	628, 849
PflMI	CCANNNNNTGG	2 cut(s)	439, 932
PkrI	GCNGC	7 cut(s)	199, 364, 671, 697, 704, 735, 924
PleI	GAGTC	4 cut(s)	55, 501, 614, 1043
PpsI	GAGTC	4 cut(s)	55, 501, 614, 1043
Psp6I	CCWGG	6 cut(s)	19, 51, 252, 386, 432, 736
PspGI	CCWGG	6 cut(s)	19, 51, 252, 386, 432, 736
PspN4I	GGNNCC	7 cut(s)	211, 258, 271, 384, 449, 656, 921
PspPI	GGNCC	2 cut(s)	257, 654
PspXI	VCTCGAGB	1 cut(s)	742
PsuI	RGATCY	3 cut(s)	209, 269, 584
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	3 cut(s)	69, 318, 865
RsaNI	GTAC	3 cut(s)	68, 317, 864
RseI	CAYNNNNRTG	1 cut(s)	513
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	7 cut(s)	198, 363, 670, 696, 703, 734, 923
Sau3AI	GATC	8 cut(s)	209, 269, 370, 505, 584, 763, 940, 1048
Sau96I	GGNCC	2 cut(s)	257, 654
ScaI	AGTACT	1 cut(s)	865
SchI	GAGTC	4 cut(s)	56, 502, 614, 1044
ScrFI	CCNGG	8 cut(s)	21, 53, 254, 264, 359, 388, 434, 738
SduI	GDGCHC	4 cut(s)	168, 347, 387, 450
SexAI	ACCWGGT	1 cut(s)	19
SfiI	GGCCNNNNNGGCC	1 cut(s)	675
Sfr274I	CTCGAG	1 cut(s)	742
SinI	GGWCC	2 cut(s)	257, 654
SlaI	CTCGAG	1 cut(s)	742
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	1 cut(s)	742
SmoI	CTYRAG	1 cut(s)	742
SpeI	ACTAGT	1 cut(s)	866
Sse9I	AATT	2 cut(s)	147, 812
SseBI	AGGCCT	2 cut(s)	437, 792
SspMI	CTAG	3 cut(s)	179, 278, 867
StuI	AGGCCT	2 cut(s)	437, 792
StyD4I	CCNGG	8 cut(s)	19, 51, 252, 262, 357, 386, 432, 736
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	758
TaqI	TCGA	3 cut(s)	425, 743, 852
TasI	AATT	2 cut(s)	147, 812
TatI	WGTACW	1 cut(s)	863
TauI	GCSGC	5 cut(s)	365, 672, 705, 736, 925
TfiI	GAWTC	2 cut(s)	628, 849
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	2 cut(s)	33, 1009
TseI	GCWGC	2 cut(s)	197, 695
TspDTI	ATGAA	5 cut(s)	17, 143, 149, 620, 825
TspRI	CASTG	2 cut(s)	33, 1009
Van91I	CCANNNNNTGG	2 cut(s)	439, 932
VpaK11BI	GGWCC	2 cut(s)	257, 654
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	742
XspI	CTAG	3 cut(s)	179, 278, 867
ZrmI	AGTACT	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.