Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005913

Physical Location & Seq

Genomic Coordinates Forward (+)

15573279 .. 15574282

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAAGAAACCAGGTGCAGTGGAAGCATGTCCTTTGGAGTCCCAGGTTGCCTCTGAAGTACCACCATCGCCTTCTTCGCTTCCCAAAGAAGGTGGTGATGGTGATGACAAGAGCAATATGAAGATGAAGGAGAAAGTAATTGTCTTAATAGACGAGCCCCAACAATCACTAGAGAAGGAGAAGGAGGCTGCGGTGGGTGGATCCACCAGCTCTGGTGTGGTGCATGATATGACACCTTCCAACCAGGGTCCGCCGGGTGGATCCAATCTAGAACTCGCTCTTTTCAACTCTTCGTCGTCTCAGTTAGTACCAGAGGTGGTGGAGGTGGAGGAGGGCTCAGACGAGAACCCAGCGGCGCGTGATCAGAAAAAGGAGCCCAGGGTTTTCAAATGCAACTTCTGCCAGAGAAAGTTCTCGACGTCCCAGGCCTTGGGAGGGCACCAGAACGCCCACAAGCAGGAGCGCCAGCTGGCGAAACGGCGGAGCCAAGCATTTGATCATATGGGTGGATTAGGGCACTCGCACTTTCCTTATTACAGCCCATATTCAGGCTTTTCCACACACTCTCTCTATGGATCTTACAACAGGTCTTCTCTTGGTGTCAGAATGGACTCCATGATTCATAAGCCTTCTTATACCCCGTGGTCCCAAACTTACGGCCGCTTTGGCCTTGCCCTCAGCGGTGCTGCCAGCGGCCTCGGTGGAGGCGCTTCTGGCTGGCTAACCTCCTTGCAAGGCCTCCAGAATAATATCAATGAATTAGGGCTTGCTGGACGAACTGCTACCGCTCCAAGATTCGAGCAGGGGAGTACTAGTGGCCTTCAAAACTTTGGTGGTTCAAATCTGTCAGCTCTCAACAACAGGGTGCCGCCAACAAATGGTGCTGATCTTCTCCGACAAGCAGAGCCTCCTCAATGTGATACCGATGGTGCTGGACTCGATCTGTCCCTTAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

319

Amino Acids

33.89

Weight (kDa)

6.26

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12011 FvH4_7g04251
malus_domestica	MD07G1042100.v1.1
prunus_persica	Prupe.2G048100_v2.0.a1 Prupe.2G048400_v2.0.a1
pyrus_communis	pycom02g23410
rosa_chinensis	RchiOBHm_Chr1g0328791
rosa_laevigata	RLG00000008539 RLG00000029918
rosa_multiflora	Rmu_co8270465.1_g000001 Rmu_sc0000652.1_g000003 Rmu_sc0004241.1_g000001 Rmu_sc0013419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321370 Rroxscaffold_5G00354150
rosa_rugosa	Rorug01G0075900 Rorug04G0095500
rosa_samantha	Rh1AG094600 Rh1BG075500 Rh1CG091900 Rh1DG097900 Rh4AG157200 Rh4BG156700 Rh4CG167200 Rh4DG150900
rosa_wichuraiana	Rw1G007380 Rw4G012850 Rw4G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	422
AccB1I	GGYRCC	2 cut(s)	438, 865
AccB7I	CCANNNNNTGG	2 cut(s)	430, 878
AccBSI	CCGCTC	1 cut(s)	788
AccII	CGCG	1 cut(s)	358
AciI	CCGC	9 cut(s)	191, 251, 353, 481, 661, 681, 693, 786, 869
AclWI	GGATC	5 cut(s)	195, 208, 255, 268, 583
AcoI	YGGCCR	1 cut(s)	658
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	419
AfaI	GTAC	3 cut(s)	60, 309, 811
AfiI	CCNNNNNNNGG	7 cut(s)	89, 257, 430, 435, 457, 548, 878
AflII	CTTAAG	1 cut(s)	950
AgsI	TTSAA	4 cut(s)	286, 388, 824, 840
AhlI	ACTAGT	1 cut(s)	812
AjnI	CCWGG	5 cut(s)	10, 42, 243, 377, 423
AluBI	AGCT	4 cut(s)	210, 469, 851, 955
AluI	AGCT	4 cut(s)	210, 469, 851, 955
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	5 cut(s)	195, 208, 255, 268, 583
AoxI	GGCC	6 cut(s)	426, 658, 667, 694, 736, 817
ApeKI	GCWGC	2 cut(s)	188, 686
AspLEI	GCGC	3 cut(s)	358, 465, 710
AspS9I	GGNCC	2 cut(s)	248, 645
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	107, 113
AvaII	GGWCC	2 cut(s)	248, 645
BaeGI	GKGCMC	2 cut(s)	441, 519
BamHI	GGATCC	2 cut(s)	200, 260
BanI	GGYRCC	2 cut(s)	438, 865
BanII	GRGCYC	3 cut(s)	159, 338, 378
BbsI	GAAGAC	1 cut(s)	582
BbvCI	CCTCAGC	1 cut(s)	677
BbvI	GCAGC	2 cut(s)	175, 673
BccI	CCATC	3 cut(s)	73, 92, 920
BceAI	ACGGC	2 cut(s)	494, 673
BciT130I	CCWGG	5 cut(s)	12, 44, 245, 379, 425
BclI	TGATCA	2 cut(s)	361, 496
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	303
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	3 cut(s)	170, 269, 813
BfoI	RGCGCY	2 cut(s)	466, 711
BfrI	CTTAAG	1 cut(s)	950
BglI	GCCNNNNNGGC	1 cut(s)	666
BisI	GCNGC	6 cut(s)	189, 354, 661, 687, 694, 869
BlsI	GCNGC	6 cut(s)	190, 355, 662, 688, 695, 870
BmcAI	AGTACT	1 cut(s)	811
Bme1390I	CCNGG	6 cut(s)	12, 44, 245, 255, 379, 425
Bme18I	GGWCC	2 cut(s)	248, 645
BmgT120I	GGNCC	2 cut(s)	248, 645
BmiI	GGNNCC	8 cut(s)	202, 249, 262, 375, 440, 485, 647, 867
BmrFI	CCNGG	6 cut(s)	12, 44, 245, 255, 379, 425
BpiI	GAAGAC	1 cut(s)	582
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpmI	CTGGAG	1 cut(s)	725
Bpu10I	CCTNAGC	1 cut(s)	677
BpuMI	CCSGG	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	419
BsaJI	CCNNGG	8 cut(s)	42, 244, 377, 378, 423, 429, 641, 697
BsaXI	ACNNNNNCTCC	2 cut(s)	799, 829
Bsc4I	CCNNNNNNNGG	7 cut(s)	89, 257, 430, 435, 457, 548, 878
BseBI	CCWGG	5 cut(s)	12, 44, 245, 379, 425
BseDI	CCNNGG	8 cut(s)	42, 244, 377, 378, 423, 429, 641, 697
BseLI	CCNNNNNNNGG	7 cut(s)	89, 257, 430, 435, 457, 548, 878
BseMII	CTCAG	3 cut(s)	314, 351, 691
BseRI	GAGGAG	2 cut(s)	344, 900
BseSI	GKGCMC	2 cut(s)	441, 519
BseX3I	CGGCCG	1 cut(s)	658
BseXI	GCAGC	2 cut(s)	175, 673
BseYI	CCCAGC	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	358
Bsh1285I	CGRYCG	1 cut(s)	661
BshFI	GGCC	6 cut(s)	428, 660, 669, 696, 738, 819
BshNI	GGYRCC	2 cut(s)	438, 865
BsiEI	CGRYCG	1 cut(s)	661
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	4 cut(s)	25, 406, 631, 931
BslI	CCNNNNNNNGG	7 cut(s)	89, 257, 430, 435, 457, 548, 878
BsmAI	GTCTC	1 cut(s)	303
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	4 cut(s)	25, 406, 631, 931
BsnI	GGCC	6 cut(s)	428, 660, 669, 696, 738, 819
Bsp1286I	GDGCHC	5 cut(s)	159, 338, 378, 441, 519
Bsp143I	GATC	7 cut(s)	200, 260, 361, 496, 575, 886, 940
BspACI	CCGC	9 cut(s)	191, 251, 353, 481, 661, 681, 693, 786, 869
BspANI	GGCC	6 cut(s)	428, 660, 669, 696, 738, 819
BspCNI	CTCAG	3 cut(s)	313, 350, 690
BspFNI	CGCG	1 cut(s)	358
BspLI	GGNNCC	8 cut(s)	202, 249, 262, 375, 440, 485, 647, 867
BspPI	GGATC	5 cut(s)	195, 208, 255, 268, 583
BspT107I	GGYRCC	2 cut(s)	438, 865
BspTI	CTTAAG	1 cut(s)	950
BsrBI	CCGCTC	1 cut(s)	788
BssECI	CCNNGG	8 cut(s)	42, 244, 377, 378, 423, 429, 641, 697
BssMI	GATC	7 cut(s)	200, 260, 361, 496, 575, 886, 940
BssNI	GRCGYC	1 cut(s)	419
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	5 cut(s)	12, 44, 245, 379, 425
Bst6I	CTCTTC	1 cut(s)	295
BstACI	GRCGYC	1 cut(s)	419
BstAFI	CTTAAG	1 cut(s)	950
BstAPI	GCANNNNNTGC	1 cut(s)	399
BstC8I	GCNNGC	5 cut(s)	467, 471, 691, 719, 768
BstDEI	CTNAG	3 cut(s)	300, 337, 677
BstDSI	CCRYGG	1 cut(s)	641
BstFNI	CGCG	1 cut(s)	358
BstH2I	RGCGCY	2 cut(s)	466, 711
BstHHI	GCGC	3 cut(s)	358, 465, 710
BstKTI	GATC	7 cut(s)	203, 263, 364, 499, 578, 889, 943
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	7 cut(s)	200, 260, 361, 496, 575, 886, 940
BstMCI	CGRYCG	1 cut(s)	661
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 76, 399, 666, 714
BstNI	CCWGG	5 cut(s)	12, 44, 245, 379, 425
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	6 cut(s)	10, 42, 243, 253, 377, 423
BstSLI	GKGCMC	2 cut(s)	441, 519
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	175, 673
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	3 cut(s)	200, 260, 575
BstYI	RGATCY	3 cut(s)	200, 260, 575
BstZI	CGGCCG	1 cut(s)	658
BsuRI	GGCC	6 cut(s)	428, 660, 669, 696, 738, 819
BtgI	CCRYGG	1 cut(s)	641
BtgZI	GCGATG	1 cut(s)	51
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	5 cut(s)	467, 471, 691, 719, 768
CfoI	GCGC	3 cut(s)	358, 465, 710
Cfr13I	GGNCC	2 cut(s)	248, 645
CsiI	ACCWGGT	1 cut(s)	10
Csp6I	GTAC	3 cut(s)	59, 308, 810
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	3 cut(s)	27, 224, 616
CviQI	GTAC	3 cut(s)	59, 308, 810
DdeI	CTNAG	3 cut(s)	300, 337, 677
DpnI	GATC	7 cut(s)	202, 262, 363, 498, 577, 888, 942
DpnII	GATC	7 cut(s)	200, 260, 361, 496, 575, 886, 940
EaeI	YGGCCR	1 cut(s)	658
EagI	CGGCCG	1 cut(s)	658
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
EciI	GGCGGA	2 cut(s)	240, 496
EclXI	CGGCCG	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	429
Eco147I	AGGCCT	2 cut(s)	428, 738
Eco24I	GRGCYC	3 cut(s)	159, 338, 378
Eco47I	GGWCC	2 cut(s)	248, 645
Eco52I	CGGCCG	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	5 cut(s)	10, 42, 243, 377, 423
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	3 cut(s)	159, 338, 378
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	3 cut(s)	30, 227, 619
FaqI	GGGAC	4 cut(s)	25, 406, 631, 931
FatI	CATG	3 cut(s)	26, 223, 615
FauNDI	CATATG	1 cut(s)	501
FbaI	TGATCA	2 cut(s)	361, 496
Fnu4HI	GCNGC	6 cut(s)	189, 354, 661, 687, 694, 869
FriOI	GRGCYC	3 cut(s)	159, 338, 378
Fsp4HI	GCNGC	6 cut(s)	189, 354, 661, 687, 694, 869
FspBI	CTAG	3 cut(s)	170, 269, 813
GlaI	GCGC	3 cut(s)	357, 464, 709
GluI	GCNGC	6 cut(s)	189, 354, 661, 687, 694, 869
GsaI	CCCAGC	1 cut(s)	353
GsuI	CTGGAG	1 cut(s)	725
HaeII	RGCGCY	2 cut(s)	466, 711
HaeIII	GGCC	6 cut(s)	428, 660, 669, 696, 738, 819
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	3 cut(s)	358, 465, 710
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	3 cut(s)	30, 227, 619
Hin6I	GCGC	3 cut(s)	356, 463, 708
HinP1I	GCGC	3 cut(s)	356, 463, 708
HindIII	AAGCTT	1 cut(s)	953
HinfI	GANTC	5 cut(s)	38, 611, 619, 795, 936
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	107, 113
Hpy188I	TCNGA	5 cut(s)	55, 340, 366, 605, 896
Hpy188III	TCNNGA	3 cut(s)	269, 415, 742
Hpy99I	CGWCG	2 cut(s)	298, 421
HpyAV	CCTTC	8 cut(s)	81, 83, 121, 169, 175, 246, 639, 830
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	4 cut(s)	17, 223, 393, 733
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 76, 399, 666, 714
HpyF3I	CTNAG	3 cut(s)	300, 337, 677
HpySE526I	ACGT	1 cut(s)	419
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	3 cut(s)	30, 227, 619
HspAI	GCGC	3 cut(s)	356, 463, 708
Ksp22I	TGATCA	2 cut(s)	361, 496
Kzo9I	GATC	7 cut(s)	200, 260, 361, 496, 575, 886, 940
LmnI	GCTCC	4 cut(s)	373, 460, 483, 793
Lsp1109I	GCAGC	2 cut(s)	175, 673
MabI	ACCWGGT	1 cut(s)	10
MaeI	CTAG	3 cut(s)	170, 269, 813
MaeII	ACGT	1 cut(s)	419
MalI	GATC	7 cut(s)	202, 262, 363, 498, 577, 888, 942
MbiI	CCGCTC	1 cut(s)	788
MboI	GATC	7 cut(s)	200, 260, 361, 496, 575, 886, 940
MboII	GAAGA	6 cut(s)	16, 66, 133, 282, 582, 881
MflI	RGATCY	3 cut(s)	200, 260, 575
MhlI	GDGCHC	5 cut(s)	159, 338, 378, 441, 519
MluCI	AATT	2 cut(s)	138, 758
MlyI	GAGTC	3 cut(s)	47, 605, 930
MmeI	TCCRAC	2 cut(s)	264, 919
MseI	TTAA	2 cut(s)	146, 951
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	4 cut(s)	353, 469, 681, 693
MspCI	CTTAAG	1 cut(s)	950
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	6 cut(s)	12, 44, 245, 255, 379, 425
MvaI	CCWGG	5 cut(s)	12, 44, 245, 379, 425
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	5 cut(s)	23, 76, 399, 666, 714
NciI	CCSGG	1 cut(s)	255
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	7 cut(s)	200, 260, 361, 496, 575, 886, 940
NlaIII	CATG	3 cut(s)	30, 227, 619
NlaIV	GGNNCC	8 cut(s)	202, 249, 262, 375, 440, 485, 647, 867
NspI	RCATGY	1 cut(s)	30
PasI	CCCWGGG	1 cut(s)	378
PceI	AGGCCT	2 cut(s)	428, 738
PfeI	GAWTC	2 cut(s)	619, 795
PflMI	CCANNNNNTGG	2 cut(s)	430, 878
PkrI	GCNGC	6 cut(s)	190, 355, 662, 688, 695, 870
PleI	GAGTC	3 cut(s)	46, 605, 930
PpsI	GAGTC	3 cut(s)	46, 605, 930
Psp6I	CCWGG	5 cut(s)	10, 42, 243, 377, 423
PspFI	CCCAGC	1 cut(s)	349
PspGI	CCWGG	5 cut(s)	10, 42, 243, 377, 423
PspN4I	GGNNCC	8 cut(s)	202, 249, 262, 375, 440, 485, 647, 867
PspPI	GGNCC	2 cut(s)	248, 645
PsuI	RGATCY	3 cut(s)	200, 260, 575
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	3 cut(s)	60, 309, 811
RsaNI	GTAC	3 cut(s)	59, 308, 810
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	146, 951
SatI	GCNGC	6 cut(s)	189, 354, 661, 687, 694, 869
Sau3AI	GATC	7 cut(s)	200, 260, 361, 496, 575, 886, 940
Sau96I	GGNCC	2 cut(s)	248, 645
ScaI	AGTACT	1 cut(s)	811
SchI	GAGTC	3 cut(s)	47, 605, 930
ScrFI	CCNGG	6 cut(s)	12, 44, 245, 255, 379, 425
SduI	GDGCHC	5 cut(s)	159, 338, 378, 441, 519
SexAI	ACCWGGT	1 cut(s)	10
SfiI	GGCCNNNNNGGCC	1 cut(s)	666
SinI	GGWCC	2 cut(s)	248, 645
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
SpeI	ACTAGT	1 cut(s)	812
Sse9I	AATT	2 cut(s)	138, 758
SseBI	AGGCCT	2 cut(s)	428, 738
SsiI	CCGC	9 cut(s)	191, 251, 353, 481, 661, 681, 693, 786, 869
SspMI	CTAG	3 cut(s)	170, 269, 813
StuI	AGGCCT	2 cut(s)	428, 738
StyD4I	CCNGG	6 cut(s)	10, 42, 243, 253, 377, 423
StyI	CCWWGG	1 cut(s)	429
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	3 cut(s)	416, 798, 939
TasI	AATT	2 cut(s)	138, 758
TatI	WGTACW	1 cut(s)	809
TauI	GCSGC	4 cut(s)	356, 663, 696, 871
TfiI	GAWTC	2 cut(s)	619, 795
Tru1I	TTAA	2 cut(s)	146, 951
Tru9I	TTAA	2 cut(s)	146, 951
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	2 cut(s)	188, 686
TspDTI	ATGAA	5 cut(s)	17, 134, 140, 611, 771
TspRI	CASTG	1 cut(s)	24
Van91I	CCANNNNNTGG	2 cut(s)	430, 878
Vha464I	CTTAAG	1 cut(s)	950
VpaK11BI	GGWCC	2 cut(s)	248, 645
XbaI	TCTAGA	1 cut(s)	268
XceI	RCATGY	1 cut(s)	30
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XspI	CTAG	3 cut(s)	170, 269, 813
ZraI	GACGTC	1 cut(s)	420
ZrmI	AGTACT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.