Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005913

Physical Location & Seq

Genomic Coordinates Forward (+)

5579973 .. 5580983

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G048400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCTGAAGAACCCAGAGTAGAACATCTAAGCCCTACTTCTGAGGCTTCTAACATCTCAGCCACCTCGGATGATCTGCCACCAACAAAAAAAGATGGCCTAGAAAATCTTGACCGAAAAATGAAAGAGAAAATTGTCATCGATGATTCTGATGACGATGATACTCAACAACCACCGCCACCACCAGTCATCAGCTCATCGTCGTCGCCATCACCAAGTTCTCGGCTCCGACTTGATCTGAAGCTTTGCAACAACGAATCTGCTCATGGGTTAGGGTCGTCGTCGTCGAGGCTTGAACTCAGCCTGTTCAACCCTTCGAACCTGGGTTCTTCCAATCCGGGCTCATCAAACCCGGTCTCAGAGTACTCTCAACCCAACGAGACCACAGACGAGAACCCACGTGGCAGTGATGACAAAAGATCCCAACCTAGGGTTTTCACATGCAACTTTTGCAAGAGGGAGTTCTCTACTTCTCAAGCATTGGGAGGGCATCAAAACGCTCACAAACAAGAGCGCGCCTTGGCCAAAAGGCGGCAAGGAGGACTTGAAAATATGGGAGGTGTCTTGGGACATTCACCATTTCCTTATTACAACCCATATTCCAGTCTCTCATCACCCTCTCTCTATGGATCTTTCAATAGATCTCTTGGGGTTAGGATGGATTCCATGATTCACAAGCCTTCTTATCCATGGTCCTCAACCCTCGGCTTCGGGCGGTTCGGCCCTAGCTCTGAGGCATGGTCATCTAGGGCAGGTAGCCTCTTGAACTTCCAATCCACTATTGATAGGCTCAACCTAGACGGCCTTCATGCTAATGCTCCCAATGGAATATCAGGGCTTCCAGGAACTAGTAGCGCTTCAAGGTTTGATAAGGAAATCGGTGTTGTTGGCAACTTTGGTGGTTCGAGTTCGAATTCTGAAATCAACAGGCCAATCCTTGGTGATCTCCCCCGAGAGCCTCCAACATCCGATACTGATGCTGCTGGCCTAGATCTGTCTCTTAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

337

Amino Acids

36.07

Weight (kDa)

5.56

Isoelectric Point (pI)

61.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12011 FvH4_7g04251
malus_domestica	MD07G1042100.v1.1
prunus_persica	Prupe.2G048100_v2.0.a1 Prupe.2G048400_v2.0.a1
pyrus_communis	pycom02g23410
rosa_chinensis	RchiOBHm_Chr1g0328791
rosa_laevigata	RLG00000008539 RLG00000029918
rosa_multiflora	Rmu_co8270465.1_g000001 Rmu_sc0000652.1_g000003 Rmu_sc0004241.1_g000001 Rmu_sc0013419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321370 Rroxscaffold_5G00354150
rosa_rugosa	Rorug01G0075900 Rorug04G0095500
rosa_samantha	Rh1AG094600 Rh1BG075500 Rh1CG091900 Rh1DG097900 Rh4AG157200 Rh4BG156700 Rh4CG167200 Rh4DG150900
rosa_wichuraiana	Rw1G007380 Rw4G012850 Rw4G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	743
AccB7I	CCANNNNNTGG	1 cut(s)	938
AccII	CGCG	1 cut(s)	516
AciI	CCGC	3 cut(s)	176, 532, 715
AclWI	GGATC	2 cut(s)	414, 637
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	1 cut(s)	913
AcuI	CTGAAG	2 cut(s)	27, 260
AcvI	CACGTG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	365
AfeI	AGCGCT	1 cut(s)	856
AfiI	CCNNNNNNNGG	4 cut(s)	429, 430, 531, 938
AflII	CTTAAG	1 cut(s)	1001
AgsI	TTSAA	6 cut(s)	296, 310, 548, 637, 766, 861
AhlI	ACTAGT	1 cut(s)	848
AjnI	CCWGG	2 cut(s)	321, 841
AloI	GAACNNNNNNTCC	2 cut(s)	758, 790
AluBI	AGCT	4 cut(s)	195, 244, 729, 1006
AluI	AGCT	4 cut(s)	195, 244, 729, 1006
Alw26I	GTCTC	4 cut(s)	361, 374, 611, 1002
AlwI	GGATC	2 cut(s)	414, 637
Ama87I	CYCGRG	1 cut(s)	951
Aor51HI	AGCGCT	1 cut(s)	856
AoxI	GGCC	6 cut(s)	97, 522, 721, 802, 929, 985
ApeKI	GCWGC	1 cut(s)	980
ApoI	RAATTY	1 cut(s)	913
AspA2I	CCTAGG	1 cut(s)	428
AspLEI	GCGC	3 cut(s)	516, 518, 857
AspS9I	GGNCC	2 cut(s)	693, 722
AsuC2I	CCSGG	2 cut(s)	339, 353
AsuHPI	GGTGA	4 cut(s)	204, 567, 606, 953
AsuII	TTCGAA	2 cut(s)	317, 911
AvaI	CYCGRG	1 cut(s)	951
AvaII	GGWCC	1 cut(s)	693
AvrII	CCTAGG	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	344
BbrPI	CACGTG	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	967
BccI	CCATC	3 cut(s)	89, 217, 652
BceAI	ACGGC	1 cut(s)	817
BcgI	CGANNNNNNTGC	2 cut(s)	959, 993
BciT130I	CCWGG	2 cut(s)	323, 843
BcnI	CCSGG	2 cut(s)	339, 353
BcoDI	GTCTC	4 cut(s)	361, 374, 611, 1002
BcuI	ACTAGT	1 cut(s)	848
BfaI	CTAG	7 cut(s)	101, 429, 726, 747, 797, 849, 989
BfoI	RGCGCY	1 cut(s)	858
BfrI	CTTAAG	1 cut(s)	1001
BfuAI	ACCTGC	1 cut(s)	743
BglII	AGATCT	2 cut(s)	641, 991
BisI	GCNGC	2 cut(s)	533, 981
BlnI	CCTAGG	1 cut(s)	428
BlsI	GCNGC	2 cut(s)	534, 982
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	4 cut(s)	323, 339, 353, 843
Bme18I	GGWCC	1 cut(s)	693
BmeT110I	CYCGRG	1 cut(s)	951
BmgT120I	GGNCC	2 cut(s)	693, 722
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	4 cut(s)	323, 339, 353, 843
BmsI	GCATC	2 cut(s)	499, 967
Bpu14I	TTCGAA	2 cut(s)	317, 911
BpuEI	CTTGAG	1 cut(s)	459
BpuMI	CCSGG	2 cut(s)	339, 353
Bsa29I	ATCGAT	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	401
BsaI	GGTCTC	2 cut(s)	361, 374
BsaJI	CCNNGG	7 cut(s)	66, 322, 428, 519, 689, 703, 937
Bsc4I	CCNNNNNNNGG	4 cut(s)	429, 430, 531, 938
Bse1I	ACTGG	2 cut(s)	185, 603
BseBI	CCWGG	2 cut(s)	323, 843
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	7 cut(s)	66, 322, 428, 519, 689, 703, 937
BseGI	GGATG	3 cut(s)	76, 663, 965
BseLI	CCNNNNNNNGG	4 cut(s)	429, 430, 531, 938
BseMII	CTCAG	5 cut(s)	33, 72, 313, 372, 723
BseNI	ACTGG	2 cut(s)	185, 603
BsePI	GCGCGC	1 cut(s)	514
BseXI	GCAGC	1 cut(s)	967
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	6 cut(s)	99, 524, 723, 804, 931, 987
BshVI	ATCGAT	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	951
BsiSI	CCGG	2 cut(s)	338, 353
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	4 cut(s)	429, 430, 531, 938
BsmAI	GTCTC	4 cut(s)	361, 374, 611, 1002
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	6 cut(s)	99, 524, 723, 804, 931, 987
Bso31I	GGTCTC	2 cut(s)	361, 374
BsoBI	CYCGRG	1 cut(s)	951
Bsp119I	TTCGAA	2 cut(s)	317, 911
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	7 cut(s)	73, 235, 419, 629, 641, 943, 991
Bsp19I	CCATGG	1 cut(s)	689
BspACI	CCGC	3 cut(s)	176, 532, 715
BspANI	GGCC	6 cut(s)	99, 524, 723, 804, 931, 987
BspCNI	CTCAG	5 cut(s)	34, 71, 312, 371, 724
BspDI	ATCGAT	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	227
BspMI	ACCTGC	1 cut(s)	743
BspPI	GGATC	2 cut(s)	414, 637
BspT104I	TTCGAA	2 cut(s)	317, 911
BspTI	CTTAAG	1 cut(s)	1001
BspTNI	GGTCTC	2 cut(s)	361, 374
BsrI	ACTGG	2 cut(s)	185, 603
BssECI	CCNNGG	7 cut(s)	66, 322, 428, 519, 689, 703, 937
BssHII	GCGCGC	1 cut(s)	514
BssMI	GATC	7 cut(s)	73, 235, 419, 629, 641, 943, 991
BssT1I	CCWWGG	4 cut(s)	428, 519, 689, 937
Bst2UI	CCWGG	2 cut(s)	323, 843
BstAFI	CTTAAG	1 cut(s)	1001
BstAPI	GCANNNNNTGC	1 cut(s)	450
BstBAI	YACGTR	1 cut(s)	401
BstBI	TTCGAA	2 cut(s)	317, 911
BstC8I	GCNNGC	2 cut(s)	516, 985
BstDEI	CTNAG	6 cut(s)	29, 42, 58, 299, 358, 732
BstDSI	CCRYGG	1 cut(s)	689
BstF5I	GGATG	3 cut(s)	76, 663, 965
BstFNI	CGCG	1 cut(s)	516
BstH2I	RGCGCY	1 cut(s)	858
BstHHI	GCGC	3 cut(s)	516, 518, 857
BstKTI	GATC	7 cut(s)	76, 238, 422, 632, 644, 946, 994
BstMAI	GTCTC	4 cut(s)	361, 374, 611, 1002
BstMBI	GATC	7 cut(s)	73, 235, 419, 629, 641, 943, 991
BstMWI	GCNNNNNNNGC	1 cut(s)	450
BstNI	CCWGG	2 cut(s)	323, 843
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	4 cut(s)	321, 337, 351, 841
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	1 cut(s)	967
BstX2I	RGATCY	4 cut(s)	419, 629, 641, 991
BstYI	RGATCY	4 cut(s)	419, 629, 641, 991
Bsu15I	ATCGAT	1 cut(s)	141
BsuRI	GGCC	6 cut(s)	99, 524, 723, 804, 931, 987
BsuTUI	ATCGAT	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	689
BtsCI	GGATG	3 cut(s)	76, 663, 965
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	412
BveI	ACCTGC	1 cut(s)	743
Cac8I	GCNNGC	2 cut(s)	516, 985
CfoI	GCGC	3 cut(s)	516, 518, 857
Cfr13I	GGNCC	2 cut(s)	693, 722
ClaI	ATCGAT	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	364
CspCI	CAANNNNNGTGG	2 cut(s)	880, 915
CviAII	CATG	6 cut(s)	266, 441, 667, 690, 738, 809
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	6 cut(s)	29, 42, 58, 299, 358, 732
DpnI	GATC	7 cut(s)	75, 237, 421, 631, 643, 945, 993
DpnII	GATC	7 cut(s)	73, 235, 419, 629, 641, 943, 991
EaeI	YGGCCR	1 cut(s)	522
Eco130I	CCWWGG	4 cut(s)	428, 519, 689, 937
Eco24I	GRGCYC	1 cut(s)	344
Eco31I	GGTCTC	2 cut(s)	361, 374
Eco47I	GGWCC	1 cut(s)	693
Eco47III	AGCGCT	1 cut(s)	856
Eco57I	CTGAAG	2 cut(s)	27, 260
Eco72I	CACGTG	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	951
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	2 cut(s)	321, 841
EcoT14I	CCWWGG	4 cut(s)	428, 519, 689, 937
EcoT38I	GRGCYC	1 cut(s)	344
ErhI	CCWWGG	4 cut(s)	428, 519, 689, 937
FaeI	CATG	6 cut(s)	269, 444, 670, 693, 741, 812
FaiI	YATR	9 cut(s)	267, 442, 554, 598, 627, 668, 691, 739, 810
FalI	AAGNNNNNCTT	4 cut(s)	22, 54, 528, 560
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	6 cut(s)	265, 440, 666, 689, 737, 808
Fnu4HI	GCNGC	2 cut(s)	533, 981
FokI	GGATG	3 cut(s)	83, 670, 952
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	533, 981
FspBI	CTAG	7 cut(s)	101, 429, 726, 747, 797, 849, 989
GlaI	GCGC	3 cut(s)	515, 517, 856
GluI	GCNGC	2 cut(s)	533, 981
HaeII	RGCGCY	1 cut(s)	858
HaeIII	GGCC	6 cut(s)	99, 524, 723, 804, 931, 987
HapII	CCGG	2 cut(s)	338, 353
HhaI	GCGC	3 cut(s)	516, 518, 857
Hin1II	CATG	6 cut(s)	269, 444, 670, 693, 741, 812
Hin6I	GCGC	3 cut(s)	514, 516, 855
HinP1I	GCGC	3 cut(s)	514, 516, 855
HindIII	AAGCTT	2 cut(s)	242, 1004
HinfI	GANTC	4 cut(s)	146, 257, 662, 670
HpaII	CCGG	2 cut(s)	338, 353
HphI	GGTGA	4 cut(s)	204, 567, 606, 953
Hpy188I	TCNGA	9 cut(s)	43, 70, 151, 230, 240, 361, 733, 919, 970
Hpy188III	TCNNGA	2 cut(s)	110, 763
Hpy99I	CGWCG	5 cut(s)	205, 208, 283, 286, 289
HpyAV	CCTTC	3 cut(s)	324, 690, 815
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	3 cut(s)	249, 444, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	450
HpyF3I	CTNAG	6 cut(s)	29, 42, 58, 299, 358, 732
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	6 cut(s)	269, 444, 670, 693, 741, 812
HspAI	GCGC	3 cut(s)	514, 516, 855
Kzo9I	GATC	7 cut(s)	73, 235, 419, 629, 641, 943, 991
LmnI	GCTCC	2 cut(s)	231, 823
Lsp1109I	GCAGC	1 cut(s)	967
LweI	GCATC	2 cut(s)	499, 967
MaeI	CTAG	7 cut(s)	101, 429, 726, 747, 797, 849, 989
MaeII	ACGT	1 cut(s)	400
MalI	GATC	7 cut(s)	75, 237, 421, 631, 643, 945, 993
MboI	GATC	7 cut(s)	73, 235, 419, 629, 641, 943, 991
MboII	GAAGA	2 cut(s)	20, 321
MflI	RGATCY	4 cut(s)	419, 629, 641, 991
MhlI	GDGCHC	1 cut(s)	344
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	2 cut(s)	132, 913
MluNI	TGGCCA	1 cut(s)	524
MmeI	TCCRAC	2 cut(s)	253, 986
Mox20I	TGGCCA	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	1 cut(s)	1002
MslI	CAYNNNNRTG	1 cut(s)	813
Msp20I	TGGCCA	1 cut(s)	524
MspCI	CTTAAG	1 cut(s)	1001
MspI	CCGG	2 cut(s)	338, 353
MspR9I	CCNGG	4 cut(s)	323, 339, 353, 843
MvaI	CCWGG	2 cut(s)	323, 843
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	450
NciI	CCSGG	2 cut(s)	339, 353
NcoI	CCATGG	1 cut(s)	689
NdeII	GATC	7 cut(s)	73, 235, 419, 629, 641, 943, 991
NlaIII	CATG	6 cut(s)	269, 444, 670, 693, 741, 812
NlaIV	GGNNCC	1 cut(s)	227
NmeAIII	GCCGAG	2 cut(s)	202, 684
NspI	RCATGY	1 cut(s)	444
NspV	TTCGAA	2 cut(s)	317, 911
PauI	GCGCGC	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PfeI	GAWTC	4 cut(s)	146, 257, 662, 670
PflMI	CCANNNNNTGG	1 cut(s)	938
PfoI	TCCNGGA	1 cut(s)	841
PkrI	GCNGC	2 cut(s)	534, 982
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
Ppu21I	YACGTR	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	321, 841
PspCI	CACGTG	1 cut(s)	401
PspGI	CCWGG	2 cut(s)	321, 841
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	2 cut(s)	693, 722
PsuI	RGATCY	4 cut(s)	419, 629, 641, 991
PteI	GCGCGC	1 cut(s)	514
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	813
SaqAI	TTAA	1 cut(s)	1002
SatI	GCNGC	2 cut(s)	533, 981
Sau3AI	GATC	7 cut(s)	73, 235, 419, 629, 641, 943, 991
Sau96I	GGNCC	2 cut(s)	693, 722
ScaI	AGTACT	1 cut(s)	365
ScrFI	CCNGG	4 cut(s)	323, 339, 353, 843
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	2 cut(s)	499, 967
SfuI	TTCGAA	2 cut(s)	317, 911
SinI	GGWCC	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	813
SmlI	CTYRAG	2 cut(s)	474, 1001
SmoI	CTYRAG	2 cut(s)	474, 1001
SpeI	ACTAGT	1 cut(s)	848
Sse9I	AATT	2 cut(s)	132, 913
SsiI	CCGC	3 cut(s)	176, 532, 715
SspMI	CTAG	7 cut(s)	101, 429, 726, 747, 797, 849, 989
StyD4I	CCNGG	4 cut(s)	321, 337, 351, 841
StyI	CCWWGG	4 cut(s)	428, 519, 689, 937
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	5 cut(s)	141, 287, 317, 905, 911
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	2 cut(s)	132, 913
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	535
TfiI	GAWTC	4 cut(s)	146, 257, 662, 670
Tru1I	TTAA	1 cut(s)	1002
Tru9I	TTAA	1 cut(s)	1002
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	1 cut(s)	980
TspDTI	ATGAA	2 cut(s)	137, 797
TspRI	CASTG	1 cut(s)	412
Van91I	CCANNNNNTGG	1 cut(s)	938
Vha464I	CTTAAG	1 cut(s)	1001
VpaK11BI	GGWCC	1 cut(s)	693
XapI	RAATTY	1 cut(s)	913
XceI	RCATGY	1 cut(s)	444
XmaJI	CCTAGG	1 cut(s)	428
XspI	CTAG	7 cut(s)	101, 429, 726, 747, 797, 849, 989
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.