Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005913

Physical Location & Seq

Genomic Coordinates Forward (+)

31761335 .. 31762570

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008539

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAGATACCAGTACTAGAAGTATGCGCTAATTCTTCCGAGGCCTCGAGCATCATCTCAGCCGCCTCGGACAAGAAGAATACTATGAAGATGAAGGAGATCAACATCGCCGGCGAATCCCAACAACAACAAAAGCCAGAGGTGGTGGCGGAGGAGGCAGAAGCCAATGTTGAACTTGCACTTTTCAAGGCTAATCCGCCGGAGGAGGAGGCCTCGGAGAAGAAAGAAAAAGAAGATACTAGGGTTTTCAAGTGCAACTTCTGCAACAGAAACTTCTCTACTTCCCAAGCCTTGGGAGGCCACCAAAACGCTCACAAACCGGAACGCCAGCTTGCAAAACGGCGTAGCCAAGGATTGGATGTGGGTGGAGGATTTGGATTAGGGCAGTCTTACTATCCTTACAATTTCAGTCCATATTCTTCATCTACTCTTTCTCCACACTACTCACTTTATGGATCTAGGTCGACGTCTCTTGGTGTTAGGCTAGATTCCATGATTCATAAGCCTTCTTATACCCCGTGGTACGACCGCCTAGGTGGCGGTGCAGGGTGGTCGAGGCCAGCTTCCTCAAGCCTCCTGCAGAACCACCTTATTAATGATCAAAGGCTCAGCTTCCAGGGTGCTCAGAATAATATCAACACCAACGAATTAGGGCTTGGTGTACGAACATTTAATGCATCATCAAGATTGGAGGAGAGTAGTACTAGTACTCGTGCTGTTCGCAACTTCGGTGGTACTTGGAATCTTAACGCAATCAACAACAACAACAACAACAAAAAGCCGCCACTGCCACCATTCAGTGGTAGTACTGATCTTCTGTCTCGAGTAGAGCGGCCCCGAAAGAATGACCAGGATGGTGACGATGACATCGATTTGACGCTTAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

297

Amino Acids

32.63

Weight (kDa)

6.98

Isoelectric Point (pI)

56.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	82 - 107	5.5e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12011 FvH4_7g04251
malus_domestica	MD07G1042100.v1.1
prunus_persica	Prupe.2G048100_v2.0.a1 Prupe.2G048400_v2.0.a1
pyrus_communis	pycom02g23410
rosa_chinensis	RchiOBHm_Chr1g0328791
rosa_laevigata	RLG00000008539 RLG00000029918
rosa_multiflora	Rmu_co8270465.1_g000001 Rmu_sc0000652.1_g000003 Rmu_sc0004241.1_g000001 Rmu_sc0013419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321370 Rroxscaffold_5G00354150
rosa_rugosa	Rorug01G0075900 Rorug04G0095500
rosa_samantha	Rh1AG094600 Rh1BG075500 Rh1CG091900 Rh1DG097900 Rh4AG157200 Rh4BG156700 Rh4CG167200 Rh4DG150900
rosa_wichuraiana	Rw1G007380 Rw4G012850 Rw4G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	470
AccB7I	CCANNNNNTGG	3 cut(s)	292, 355, 800
AccBSI	CCGCTC	1 cut(s)	832
AccI	GTMKAC	1 cut(s)	464
AciI	CCGC	7 cut(s)	63, 149, 197, 529, 540, 782, 832
AclWI	GGATC	1 cut(s)	463
AcyI	GRCGYC	1 cut(s)	467
AfaI	GTAC	7 cut(s)	15, 524, 663, 703, 709, 736, 808
AfiI	CCNNNNNNNGG	3 cut(s)	292, 355, 800
AflII	CTTAAG	1 cut(s)	881
AgsI	TTSAA	3 cut(s)	173, 187, 250
AhlI	ACTAGT	1 cut(s)	704
AjnI	CCWGG	2 cut(s)	615, 849
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AluBI	AGCT	4 cut(s)	331, 563, 612, 886
AluI	AGCT	4 cut(s)	331, 563, 612, 886
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	2 cut(s)	474, 825
AlwI	GGATC	1 cut(s)	463
Ama87I	CYCGRG	2 cut(s)	46, 822
AoxI	GGCC	5 cut(s)	42, 210, 298, 557, 833
AseI	ATTAAT	1 cut(s)	594
AspA2I	CCTAGG	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	834
AsuHPI	GGTGA	1 cut(s)	869
AvaI	CYCGRG	2 cut(s)	46, 822
AvrII	CCTAGG	1 cut(s)	532
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BauI	CACGAG	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	625
BccI	CCATC	1 cut(s)	848
BceAI	ACGGC	1 cut(s)	356
BcgI	CGANNNNNNTGC	2 cut(s)	534, 568
BciT130I	CCWGG	2 cut(s)	617, 851
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	2 cut(s)	474, 825
BcuI	ACTAGT	1 cut(s)	704
BfaI	CTAG	6 cut(s)	17, 240, 459, 485, 533, 705
BfmI	CTRYAG	1 cut(s)	578
BfrI	CTTAAG	1 cut(s)	881
BglI	GCCNNNNNGGC	1 cut(s)	537
BisI	GCNGC	3 cut(s)	63, 782, 833
BlnI	CCTAGG	1 cut(s)	532
BlpI	GCTNAGC	1 cut(s)	608
BlsI	GCNGC	3 cut(s)	64, 783, 834
BmcAI	AGTACT	4 cut(s)	15, 703, 709, 808
Bme1390I	CCNGG	2 cut(s)	617, 851
BmeT110I	CYCGRG	2 cut(s)	46, 822
BmgT120I	GGNCC	1 cut(s)	834
BmiI	GGNNCC	1 cut(s)	836
BmrFI	CCNGG	2 cut(s)	617, 851
BmsI	GCATC	2 cut(s)	60, 686
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
Bpu1102I	GCTNAGC	1 cut(s)	608
BpuEI	CTTGAG	1 cut(s)	553
Bsa29I	ATCGAT	1 cut(s)	870
BsaBI	GATNNNNATC	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	467
BsaJI	CCNNGG	8 cut(s)	39, 66, 213, 291, 349, 518, 532, 616
BsaWI	WCCGGW	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 355, 800
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	617, 851
BseCI	ATCGAT	1 cut(s)	870
BseDI	CCNNGG	8 cut(s)	39, 66, 213, 291, 349, 518, 532, 616
BseGI	GGATG	2 cut(s)	364, 859
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	3 cut(s)	292, 355, 800
BseMII	CTCAG	3 cut(s)	72, 622, 638
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	4 cut(s)	167, 218, 221, 707
BsgI	GTGCAG	1 cut(s)	564
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	5 cut(s)	44, 212, 300, 559, 835
BshVI	ATCGAT	1 cut(s)	870
BsiEI	CGRYCG	1 cut(s)	529
BsiHKAI	GWGCWC	1 cut(s)	625
BsiHKCI	CYCGRG	2 cut(s)	46, 822
BsiSI	CCGG	3 cut(s)	111, 200, 320
BslI	CCNNNNNNNGG	3 cut(s)	292, 355, 800
BsmAI	GTCTC	2 cut(s)	474, 825
BsmBI	CGTCTC	1 cut(s)	474
BsnI	GGCC	5 cut(s)	44, 212, 300, 559, 835
BsoBI	CYCGRG	2 cut(s)	46, 822
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	4 cut(s)	99, 455, 598, 811
Bsp1720I	GCTNAGC	1 cut(s)	608
BspACI	CCGC	7 cut(s)	63, 149, 197, 529, 540, 782, 832
BspANI	GGCC	5 cut(s)	44, 212, 300, 559, 835
BspCNI	CTCAG	3 cut(s)	71, 621, 637
BspDI	ATCGAT	1 cut(s)	870
BspLI	GGNNCC	1 cut(s)	836
BspMAI	CTGCAG	1 cut(s)	582
BspPI	GGATC	1 cut(s)	463
BspTI	CTTAAG	1 cut(s)	881
BsrBI	CCGCTC	1 cut(s)	832
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	8 cut(s)	39, 66, 213, 291, 349, 518, 532, 616
BssMI	GATC	4 cut(s)	99, 455, 598, 811
BssNI	GRCGYC	1 cut(s)	467
BssSI	CACGAG	1 cut(s)	711
BssT1I	CCWWGG	3 cut(s)	291, 349, 532
Bst2BI	CACGAG	1 cut(s)	711
Bst2UI	CCWGG	2 cut(s)	617, 851
BstACI	GRCGYC	1 cut(s)	467
BstAFI	CTTAAG	1 cut(s)	881
BstAPI	GCANNNNNTGC	1 cut(s)	261
BstC8I	GCNNGC	4 cut(s)	112, 329, 333, 561
BstDEI	CTNAG	3 cut(s)	58, 608, 624
BstDSI	CCRYGG	1 cut(s)	518
BstF5I	GGATG	2 cut(s)	364, 859
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	4 cut(s)	102, 458, 601, 814
BstMAI	GTCTC	2 cut(s)	474, 825
BstMBI	GATC	4 cut(s)	99, 455, 598, 811
BstMCI	CGRYCG	1 cut(s)	529
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 261, 537, 787
BstNI	CCWGG	2 cut(s)	617, 851
BstSCI	CCNGG	2 cut(s)	615, 849
BstSFI	CTRYAG	1 cut(s)	578
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
Bsu15I	ATCGAT	1 cut(s)	870
BsuRI	GGCC	5 cut(s)	44, 212, 300, 559, 835
BsuTUI	ATCGAT	1 cut(s)	870
BtgI	CCRYGG	1 cut(s)	518
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	364, 859
BtsI	GCAGTG	1 cut(s)	785
BtsIMutI	CAGTG	2 cut(s)	785, 805
Cac8I	GCNNGC	4 cut(s)	112, 329, 333, 561
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	834
ClaI	ATCGAT	1 cut(s)	870
CseI	GACGC	1 cut(s)	886
Csp6I	GTAC	7 cut(s)	14, 523, 662, 702, 708, 735, 807
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
CviAII	CATG	1 cut(s)	493
CviQI	GTAC	7 cut(s)	14, 523, 662, 702, 708, 735, 807
DdeI	CTNAG	3 cut(s)	58, 608, 624
DpnI	GATC	4 cut(s)	101, 457, 600, 813
DpnII	GATC	4 cut(s)	99, 455, 598, 811
EciI	GGCGGA	2 cut(s)	164, 186
Eco130I	CCWWGG	3 cut(s)	291, 349, 532
Eco147I	AGGCCT	2 cut(s)	44, 212
Eco88I	CYCGRG	2 cut(s)	46, 822
EcoRII	CCWGG	2 cut(s)	615, 849
EcoT14I	CCWWGG	3 cut(s)	291, 349, 532
EcoT22I	ATGCAT	1 cut(s)	679
ErhI	CCWWGG	3 cut(s)	291, 349, 532
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	1 cut(s)	496
FaiI	YATR	7 cut(s)	25, 86, 415, 453, 494, 501, 513
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	1 cut(s)	492
FbaI	TGATCA	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	464
Fnu4HI	GCNGC	3 cut(s)	63, 782, 833
FokI	GGATG	2 cut(s)	371, 866
Fsp4HI	GCNGC	3 cut(s)	63, 782, 833
FspBI	CTAG	6 cut(s)	17, 240, 459, 485, 533, 705
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	3 cut(s)	63, 782, 833
HaeIII	GGCC	5 cut(s)	44, 212, 300, 559, 835
HapII	CCGG	3 cut(s)	111, 200, 320
HgaI	GACGC	1 cut(s)	886
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	1 cut(s)	496
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	4 cut(s)	116, 488, 496, 742
HpaII	CCGG	3 cut(s)	111, 200, 320
HphI	GGTGA	1 cut(s)	869
Hpy166II	GTNNAC	2 cut(s)	465, 662
Hpy188I	TCNGA	4 cut(s)	40, 70, 217, 627
Hpy188III	TCNNGA	2 cut(s)	684, 822
Hpy8I	GTNNAC	2 cut(s)	465, 662
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	2 cut(s)	88, 516
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	7 cut(s)	179, 255, 264, 335, 545, 580, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 261, 537, 787
HpyF3I	CTNAG	3 cut(s)	58, 608, 624
HpySE526I	ACGT	1 cut(s)	467
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	1 cut(s)	496
HspAI	GCGC	1 cut(s)	27
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	4 cut(s)	99, 455, 598, 811
LweI	GCATC	2 cut(s)	60, 686
MaeI	CTAG	6 cut(s)	17, 240, 459, 485, 533, 705
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	1 cut(s)	857
MalI	GATC	4 cut(s)	101, 457, 600, 813
MbiI	CCGCTC	1 cut(s)	832
MboI	GATC	4 cut(s)	99, 455, 598, 811
MboII	GAAGA	7 cut(s)	27, 88, 100, 232, 245, 411, 806
MflI	RGATCY	1 cut(s)	455
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	3 cut(s)	31, 403, 647
Mph1103I	ATGCAT	1 cut(s)	679
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	4 cut(s)	594, 672, 747, 882
MspCI	CTTAAG	1 cut(s)	881
MspI	CCGG	3 cut(s)	111, 200, 320
MspR9I	CCNGG	2 cut(s)	617, 851
MvaI	CCWGG	2 cut(s)	617, 851
MwoI	GCNNNNNNNGC	4 cut(s)	155, 261, 537, 787
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	4 cut(s)	99, 455, 598, 811
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	1 cut(s)	836
NmuCI	GTSAC	1 cut(s)	857
NsiI	ATGCAT	1 cut(s)	679
PaeR7I	CTCGAG	2 cut(s)	46, 822
PceI	AGGCCT	2 cut(s)	44, 212
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	4 cut(s)	116, 488, 496, 742
PflMI	CCANNNNNTGG	3 cut(s)	292, 355, 800
PkrI	GCNGC	3 cut(s)	64, 783, 834
PshBI	ATTAAT	1 cut(s)	594
Psp6I	CCWGG	2 cut(s)	615, 849
PspGI	CCWGG	2 cut(s)	615, 849
PspN4I	GGNNCC	1 cut(s)	836
PspPI	GGNCC	1 cut(s)	834
PspXI	VCTCGAGB	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	582
PsuI	RGATCY	1 cut(s)	455
RsaI	GTAC	7 cut(s)	15, 524, 663, 703, 709, 736, 808
RsaNI	GTAC	7 cut(s)	14, 523, 662, 702, 708, 735, 807
SalI	GTCGAC	1 cut(s)	463
SaqAI	TTAA	4 cut(s)	594, 672, 747, 882
SatI	GCNGC	3 cut(s)	63, 782, 833
Sau3AI	GATC	4 cut(s)	99, 455, 598, 811
Sau96I	GGNCC	1 cut(s)	834
ScaI	AGTACT	4 cut(s)	15, 703, 709, 808
ScrFI	CCNGG	2 cut(s)	617, 851
SduI	GDGCHC	1 cut(s)	625
SetI	ASST	9 cut(s)	144, 333, 464, 470, 538, 565, 591, 614, 888
SfaNI	GCATC	2 cut(s)	60, 686
SfcI	CTRYAG	1 cut(s)	578
Sfr274I	CTCGAG	2 cut(s)	46, 822
SgrAI	CRCCGGYG	1 cut(s)	110
SlaI	CTCGAG	2 cut(s)	46, 822
SmlI	CTYRAG	4 cut(s)	46, 568, 822, 881
SmoI	CTYRAG	4 cut(s)	46, 568, 822, 881
SpeI	ACTAGT	1 cut(s)	704
Sse9I	AATT	3 cut(s)	31, 403, 647
SseBI	AGGCCT	2 cut(s)	44, 212
SsiI	CCGC	7 cut(s)	63, 149, 197, 529, 540, 782, 832
SspMI	CTAG	6 cut(s)	17, 240, 459, 485, 533, 705
StuI	AGGCCT	2 cut(s)	44, 212
StyD4I	CCNGG	2 cut(s)	615, 849
StyI	CCWWGG	3 cut(s)	291, 349, 532
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	5 cut(s)	47, 464, 554, 823, 870
TasI	AATT	3 cut(s)	31, 403, 647
TatI	WGTACW	4 cut(s)	13, 701, 707, 806
TauI	GCSGC	3 cut(s)	65, 784, 835
TfiI	GAWTC	4 cut(s)	116, 488, 496, 742
Tru1I	TTAA	4 cut(s)	594, 672, 747, 882
Tru9I	TTAA	4 cut(s)	594, 672, 747, 882
TscAI	CASTG	2 cut(s)	792, 805
TseFI	GTSAC	1 cut(s)	857
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	4 cut(s)	101, 107, 411, 488
TspRI	CASTG	2 cut(s)	792, 805
Van91I	CCANNNNNTGG	3 cut(s)	292, 355, 800
Vha464I	CTTAAG	1 cut(s)	881
VspI	ATTAAT	1 cut(s)	594
XhoI	CTCGAG	2 cut(s)	46, 822
XmaJI	CCTAGG	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	464
XspI	CTAG	6 cut(s)	17, 240, 459, 485, 533, 705
ZraI	GACGTC	1 cut(s)	468
ZrmI	AGTACT	4 cut(s)	15, 703, 709, 808
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.