Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Reverse (-)

25642184 .. 25643491

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGTTACCACAACGTCGTTCATGTTGCTCACCAATCTAATGATCCCCCACCAGGGTATCCATCGGATTATCCTCAACGGCCTGATTTTCTTCCACCGCAGCAGCCGGGGTTTCCAAACCCTTATGAGTATCCTGGCCCTCCTCCGCCTCAACCACCGCATCAACACCATCAGCGCTATCAGGATTACTTCTATGAAGGCTACTCGCCGCCGCATTCAGCTCAGCCCTTCAACCGCCAGCATTACCAGAACAATCCATACGAGTATGACAATGGCTGCTCTGCTTTCCTCAATACTTGTTTGGGTGCACTCTGCTGCTGCTGCATTTTGGAGCGCTGCTGCTGCTTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

118

Amino Acids

13.57

Weight (kDa)

5.8

Isoelectric Point (pI)

69.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	98, 146, 158, 209, 212, 235
AclWI	GGATC	1 cut(s)	38
AfeI	AGCGCT	2 cut(s)	176, 335
AfiI	CCNNNNNNNGG	2 cut(s)	53, 54
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	2 cut(s)	52, 133
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw21I	GWGCWC	1 cut(s)	310
Alw44I	GTGCAC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	38
Aor51HI	AGCGCT	2 cut(s)	176, 335
AoxI	GGCC	2 cut(s)	80, 136
ApaLI	GTGCAC	1 cut(s)	306
ApeKI	GCWGC	9 cut(s)	100, 103, 276, 315, 318, 321, 336, 339, 342
AspLEI	GCGC	2 cut(s)	177, 336
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	310
BaeI	ACNNNNGTAYC	2 cut(s)	41, 74
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	9 cut(s)	112, 115, 263, 302, 305, 308, 323, 326, 329
BccI	CCATC	2 cut(s)	70, 177
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	54, 135
BciVI	GTATCC	2 cut(s)	69, 141
BcnI	CCSGG	1 cut(s)	108
BfoI	RGCGCY	2 cut(s)	178, 337
BfuI	GTATCC	2 cut(s)	69, 141
BlpI	GCTNAGC	1 cut(s)	222
Bme1390I	CCNGG	3 cut(s)	54, 108, 135
BmgT120I	GGNCC	1 cut(s)	137
BmrFI	CCNGG	3 cut(s)	54, 108, 135
BmsI	GCATC	1 cut(s)	169
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	53, 107
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 54
BseBI	CCWGG	2 cut(s)	54, 135
BseDI	CCNNGG	2 cut(s)	53, 107
BseLI	CCNNNNNNNGG	2 cut(s)	53, 54
BseMII	CTCAG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	9 cut(s)	112, 115, 263, 302, 305, 308, 323, 326, 329
BshFI	GGCC	2 cut(s)	82, 138
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	53, 54
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	82, 138
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	43
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	6 cut(s)	98, 146, 158, 209, 212, 235
BspANI	GGCC	2 cut(s)	82, 138
BspCNI	CTCAG	1 cut(s)	235
BspPI	GGATC	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	53, 107
BssMI	GATC	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	54, 135
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	222
BstH2I	RGCGCY	2 cut(s)	178, 337
BstHHI	GCGC	2 cut(s)	177, 336
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 342
BstNI	CCWGG	2 cut(s)	54, 135
BstSCI	CCNGG	3 cut(s)	52, 106, 133
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	9 cut(s)	112, 115, 263, 302, 305, 308, 323, 326, 329
BsuI	GTATCC	2 cut(s)	69, 141
BsuRI	GGCC	2 cut(s)	82, 138
Cac8I	GCNNGC	1 cut(s)	239
CfoI	GCGC	2 cut(s)	177, 336
Cfr13I	GGNCC	1 cut(s)	137
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	7 cut(s)	82, 106, 138, 201, 221, 226, 276
CviKI_1	RGCY	7 cut(s)	82, 106, 138, 201, 221, 226, 276
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	135
Eco47III	AGCGCT	2 cut(s)	176, 335
EcoRII	CCWGG	2 cut(s)	52, 133
FaeI	CATG	1 cut(s)	26
FaiI	YATR	5 cut(s)	24, 126, 195, 259, 267
FatI	CATG	1 cut(s)	22
GlaI	GCGC	2 cut(s)	176, 335
HaeII	RGCGCY	2 cut(s)	178, 337
HaeIII	GGCC	2 cut(s)	82, 138
HapII	CCGG	1 cut(s)	107
HhaI	GCGC	2 cut(s)	177, 336
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	2 cut(s)	175, 334
HinP1I	GCGC	2 cut(s)	175, 334
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	191, 238
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	308, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 342
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	2 cut(s)	175, 334
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	9 cut(s)	39, 66, 96, 120, 120, 147, 167, 251, 260
Lsp1109I	GCAGC	9 cut(s)	112, 115, 263, 302, 305, 308, 323, 326, 329
LweI	GCATC	1 cut(s)	169
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	310
MnlI	CCTC	5 cut(s)	84, 150, 153, 159, 299
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	3 cut(s)	54, 108, 135
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	2 cut(s)	54, 135
MwoI	GCNNNNNNNGC	2 cut(s)	321, 342
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	26
PctI	GAATGC	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	52, 133
PspGI	CCWGG	2 cut(s)	52, 133
PspPI	GGNCC	1 cut(s)	137
PsrI	GAACNNNNNNTAC	2 cut(s)	242, 274
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	3 cut(s)	54, 108, 135
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	2 cut(s)	18, 223
SfaNI	GCATC	1 cut(s)	169
SsiI	CCGC	6 cut(s)	98, 146, 158, 209, 212, 235
StyD4I	CCNGG	3 cut(s)	52, 106, 133
TaiI	ACGT	1 cut(s)	18
TauI	GCSGC	2 cut(s)	211, 214
TseI	GCWGC	9 cut(s)	100, 103, 276, 315, 318, 321, 336, 339, 342
TspDTI	ATGAA	2 cut(s)	11, 210
VneI	GTGCAC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.