Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Forward (+)

83116706 .. 83117962

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAGCTACCACCAAGGCCCTCAAGAACCCTACCCTCCGCCACCACCAGGCTACCCCTATCCCCAACCAGGCCCGCCGGGATCAGCGCCGCCCTACGAAGGCTACCCTCCTCCGCCGCCTCCGGGGTATCCTCCTCACGGATACGGCCCTCCTCCTCCGCCGCCGCGTCCTCCGCCGTACGAGGGCTACCAAGGCTATTTCAACGGGGGTTACCCTCCGCCGCAATACCAGCAGCCCTGTTACCACGATCATCACCATTACCAGGCTCAGGATGATGGCTGCATCTCTTTCTTGAGAGGCTGTTTTGGTGCACTATTCTGCTGTTGTTTGCTAGAGGAATGCTGCTTCTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

119

Amino Acids

13.14

Weight (kDa)

5.23

Isoelectric Point (pI)

76.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	166
AclWI	GGATC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	8 cut(s)	47, 68, 98, 122, 137, 182, 262, 268
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	3 cut(s)	46, 67, 261
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw21I	GWGCWC	1 cut(s)	313
Alw44I	GTGCAC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	88
AoxI	GGCC	3 cut(s)	16, 70, 145
ApaLI	GTGCAC	1 cut(s)	309
ApeKI	GCWGC	3 cut(s)	232, 279, 342
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	3 cut(s)	17, 71, 146
AsuC2I	CCSGG	2 cut(s)	78, 123
AsuHPI	GGTGA	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	3 cut(s)	244, 266, 329
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	2 cut(s)	160, 160
BciT130I	CCWGG	3 cut(s)	48, 69, 263
BciVI	GTATCC	2 cut(s)	134, 138
BcnI	CCSGG	2 cut(s)	78, 123
BfaI	CTAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	89
BfuI	GTATCC	2 cut(s)	134, 138
BisI	GCNGC	8 cut(s)	89, 116, 161, 164, 221, 233, 280, 343
BlsI	GCNGC	8 cut(s)	90, 117, 162, 165, 222, 234, 281, 344
Bme1390I	CCNGG	5 cut(s)	48, 69, 78, 123, 263
BmgT120I	GGNCC	3 cut(s)	17, 71, 146
BmrFI	CCNGG	5 cut(s)	48, 69, 78, 123, 263
BmsI	GCATC	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	6, 313
BpuMI	CCSGG	2 cut(s)	78, 123
BsaJI	CCNNGG	3 cut(s)	13, 122, 190
Bsc4I	CCNNNNNNNGG	8 cut(s)	47, 68, 98, 122, 137, 182, 262, 268
BseBI	CCWGG	3 cut(s)	48, 69, 263
BseDI	CCNNGG	3 cut(s)	13, 122, 190
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	8 cut(s)	47, 68, 98, 122, 137, 182, 262, 268
BseMII	CTCAG	1 cut(s)	281
BseRI	GAGGAG	4 cut(s)	99, 123, 141, 144
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	3 cut(s)	244, 266, 329
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	3 cut(s)	18, 72, 147
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	77, 122
BsiWI	CGTACG	1 cut(s)	177
BslI	CCNNNNNNNGG	8 cut(s)	47, 68, 98, 122, 137, 182, 262, 268
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	3 cut(s)	18, 72, 147
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	80, 247
BspANI	GGCC	3 cut(s)	18, 72, 147
BspCNI	CTCAG	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	13, 122, 190
BssMI	GATC	2 cut(s)	80, 247
BssT1I	CCWWGG	2 cut(s)	13, 190
Bst2UI	CCWGG	3 cut(s)	48, 69, 263
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	2 cut(s)	83, 250
BstMBI	GATC	2 cut(s)	80, 247
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 192, 229
BstNI	CCWGG	3 cut(s)	48, 69, 263
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	5 cut(s)	46, 67, 76, 121, 261
BstSLI	GKGCMC	1 cut(s)	313
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	244, 266, 329
BsuI	GTATCC	2 cut(s)	134, 138
BsuRI	GGCC	3 cut(s)	18, 72, 147
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	74
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	3 cut(s)	17, 71, 146
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	178
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	2 cut(s)	82, 249
DpnII	GATC	2 cut(s)	80, 247
EciI	GGCGGA	5 cut(s)	27, 102, 147, 162, 207
Eco130I	CCWWGG	2 cut(s)	13, 190
Eco91I	GGTNACC	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	209
EcoRII	CCWGG	3 cut(s)	46, 67, 261
EcoT14I	CCWWGG	2 cut(s)	13, 190
ErhI	CCWWGG	2 cut(s)	13, 190
FauI	CCCGC	1 cut(s)	81
Fnu4HI	GCNGC	8 cut(s)	89, 116, 161, 164, 221, 233, 280, 343
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	8 cut(s)	89, 116, 161, 164, 221, 233, 280, 343
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	8 cut(s)	89, 116, 161, 164, 221, 233, 280, 343
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	3 cut(s)	18, 72, 147
HapII	CCGG	2 cut(s)	77, 122
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HpaII	CCGG	2 cut(s)	77, 122
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188III	TCNNGA	3 cut(s)	23, 269, 292
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	282, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 192, 229
HpyF3I	CTNAG	1 cut(s)	267
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	2 cut(s)	80, 247
Lsp1109I	GCAGC	3 cut(s)	244, 266, 329
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	2 cut(s)	209, 239
MalI	GATC	2 cut(s)	82, 249
MboI	GATC	2 cut(s)	80, 247
MhlI	GDGCHC	1 cut(s)	313
MspI	CCGG	2 cut(s)	77, 122
MspR9I	CCNGG	5 cut(s)	48, 69, 78, 123, 263
Mva1269I	GAATGC	1 cut(s)	344
MvaI	CCWGG	3 cut(s)	48, 69, 263
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	3 cut(s)	172, 192, 229
NciI	CCSGG	2 cut(s)	78, 123
NdeII	GATC	2 cut(s)	80, 247
PctI	GAATGC	1 cut(s)	344
Pfl23II	CGTACG	1 cut(s)	177
PkrI	GCNGC	8 cut(s)	90, 117, 162, 165, 222, 234, 281, 344
Psp6I	CCWGG	3 cut(s)	46, 67, 261
PspEI	GGTNACC	1 cut(s)	209
PspGI	CCWGG	3 cut(s)	46, 67, 261
PspLI	CGTACG	1 cut(s)	177
PspPI	GGNCC	3 cut(s)	17, 71, 146
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SatI	GCNGC	8 cut(s)	89, 116, 161, 164, 221, 233, 280, 343
Sau3AI	GATC	2 cut(s)	80, 247
Sau96I	GGNCC	3 cut(s)	17, 71, 146
ScrFI	CCNGG	5 cut(s)	48, 69, 78, 123, 263
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	291
SmlI	CTYRAG	2 cut(s)	21, 292
SmoI	CTYRAG	2 cut(s)	21, 292
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	5 cut(s)	46, 67, 76, 121, 261
StyI	CCWWGG	2 cut(s)	13, 190
TauI	GCSGC	5 cut(s)	91, 118, 163, 166, 223
TseI	GCWGC	3 cut(s)	232, 279, 342
TspGWI	ACGGA	1 cut(s)	153
VneI	GTGCAC	1 cut(s)	309
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.