Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Forward (+)

27031239 .. 27033224

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G311700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGTTACCAGAAAGCTCCTCAAGAACCCTACCCTCCACCAGGATACCCGTATCCGTATCCGCCGCCGGGATACCCATCAGGTCCGCCACCACCGCCGCCGCCGTACGAAGGGTACCCACCACCACCACCCGGGTATCCTCACGGATACGGTCCGCCTCCGCCACCACCCCCACATGGTCCGCCTCCGCCTTACGAGGGGTACCAAGGGTATTTCAATGAGGGGTACCCTCCGCCTCCGCCTCCACAGCAGCAATACCAGCAGCACTATCACTACGAGCATCAGAATTACCAAGAACAAGATGGTTGTATGTCTTTCTTACGAGGCTGTTTGGCTGCGCTATGCTGCTGTTGTTTGTTGGAGGAGTGCTGCTTCTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

128

Amino Acids

14.3

Weight (kDa)

4.87

Isoelectric Point (pI)

95.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	114, 201, 225
AccB1I	GGYRCC	3 cut(s)	114, 201, 225
AfaI	GTAC	4 cut(s)	107, 116, 203, 227
AfiI	CCNNNNNNNGG	6 cut(s)	41, 68, 110, 131, 176, 197
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	131
ApeKI	GCWGC	5 cut(s)	250, 262, 335, 345, 369
Asp718I	GGTACC	3 cut(s)	114, 201, 225
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	3 cut(s)	83, 152, 179
AsuC2I	CCSGG	3 cut(s)	69, 132, 133
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	3 cut(s)	83, 152, 179
BaeI	ACNNNNGTAYC	2 cut(s)	119, 152
BanI	GGYRCC	3 cut(s)	114, 201, 225
BbvI	GCAGC	5 cut(s)	262, 274, 322, 332, 356
BccI	CCATC	2 cut(s)	85, 296
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	42
BciVI	GTATCC	6 cut(s)	38, 63, 65, 69, 140, 147
BcnI	CCSGG	3 cut(s)	69, 132, 133
BfuI	GTATCC	6 cut(s)	38, 63, 65, 69, 140, 147
BisI	GCNGC	8 cut(s)	65, 98, 101, 251, 263, 336, 346, 370
BlsI	GCNGC	8 cut(s)	66, 99, 102, 252, 264, 337, 347, 371
Bme1390I	CCNGG	4 cut(s)	42, 69, 132, 133
Bme18I	GGWCC	3 cut(s)	83, 152, 179
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	3 cut(s)	83, 152, 179
BmiI	GGNNCC	3 cut(s)	116, 203, 227
BmrFI	CCNGG	4 cut(s)	42, 69, 132, 133
BmsI	GCATC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	6
BpuMI	CCSGG	3 cut(s)	69, 132, 133
BsaBI	GATNNNNATC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	131, 205
Bsc4I	CCNNNNNNNGG	6 cut(s)	41, 68, 110, 131, 176, 197
Bse8I	GATNNNNATC	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	131, 205
BseJI	GATNNNNATC	1 cut(s)	76
BseLI	CCNNNNNNNGG	6 cut(s)	41, 68, 110, 131, 176, 197
BseRI	GAGGAG	2 cut(s)	9, 377
BseXI	GCAGC	5 cut(s)	262, 274, 322, 332, 356
BshNI	GGYRCC	3 cut(s)	114, 201, 225
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	68, 132
BsiWI	CGTACG	1 cut(s)	105
BslI	CCNNNNNNNGG	6 cut(s)	41, 68, 110, 131, 176, 197
BsoBI	CYCGRG	1 cut(s)	131
BspLI	GGNNCC	3 cut(s)	116, 203, 227
BspT107I	GGYRCC	3 cut(s)	114, 201, 225
BssECI	CCNNGG	2 cut(s)	131, 205
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 247, 259
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	4 cut(s)	40, 67, 130, 131
BstV1I	GCAGC	5 cut(s)	262, 274, 322, 332, 356
BsuI	GTATCC	6 cut(s)	38, 63, 65, 69, 140, 147
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	83, 152, 179
Cfr9I	CCCGGG	1 cut(s)	131
CpoI	CGGWCCG	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	106, 115, 202, 226
CspI	CGGWCCG	1 cut(s)	152
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	3 cut(s)	17, 327, 335
CviKI_1	RGCY	3 cut(s)	17, 327, 335
CviQI	GTAC	4 cut(s)	106, 115, 202, 226
EciI	GGCGGA	8 cut(s)	51, 75, 144, 150, 171, 177, 222, 228
Eco130I	CCWWGG	1 cut(s)	205
Eco47I	GGWCC	3 cut(s)	83, 152, 179
Eco88I	CYCGRG	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	179
FaiI	YATR	3 cut(s)	177, 311, 343
FatI	CATG	1 cut(s)	175
Fnu4HI	GCNGC	8 cut(s)	65, 98, 101, 251, 263, 336, 346, 370
Fsp4HI	GCNGC	8 cut(s)	65, 98, 101, 251, 263, 336, 346, 370
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	8 cut(s)	65, 98, 101, 251, 263, 336, 346, 370
HapII	CCGG	2 cut(s)	68, 132
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HpaII	CCGG	2 cut(s)	68, 132
Hpy188I	TCNGA	1 cut(s)	285
Hpy188III	TCNNGA	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 247, 259
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	338
KpnI	GGTACC	3 cut(s)	118, 205, 229
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	7 cut(s)	23, 27, 54, 66, 81, 145, 272
Lsp1109I	GCAGC	5 cut(s)	262, 274, 322, 332, 356
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	367
MluCI	AATT	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	339
MspI	CCGG	2 cut(s)	68, 132
MspR9I	CCNGG	4 cut(s)	42, 69, 132, 133
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	94, 247, 259
NciI	CCSGG	3 cut(s)	69, 132, 133
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	3 cut(s)	116, 203, 227
Pfl23II	CGTACG	1 cut(s)	105
PkrI	GCNGC	8 cut(s)	66, 99, 102, 252, 264, 337, 347, 371
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspLI	CGTACG	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	116, 203, 227
PspPI	GGNCC	3 cut(s)	83, 152, 179
RsaI	GTAC	4 cut(s)	107, 116, 203, 227
RsaNI	GTAC	4 cut(s)	106, 115, 202, 226
Rsr2I	CGGWCCG	1 cut(s)	152
RsrII	CGGWCCG	1 cut(s)	152
SatI	GCNGC	8 cut(s)	65, 98, 101, 251, 263, 336, 346, 370
Sau96I	GGNCC	3 cut(s)	83, 152, 179
ScrFI	CCNGG	4 cut(s)	42, 69, 132, 133
SetI	ASST	2 cut(s)	19, 85
SfaNI	GCATC	1 cut(s)	289
SinI	GGWCC	3 cut(s)	83, 152, 179
SmaI	CCCGGG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	1 cut(s)	286
StyD4I	CCNGG	4 cut(s)	40, 67, 130, 131
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	152
TasI	AATT	1 cut(s)	286
TauI	GCSGC	3 cut(s)	67, 100, 103
TseI	GCWGC	5 cut(s)	250, 262, 335, 345, 369
TspGWI	ACGGA	2 cut(s)	45, 159
TspMI	CCCGGG	1 cut(s)	131
VpaK11BI	GGWCC	3 cut(s)	83, 152, 179
XagI	CCTNNNNNAGG	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XmaI	CCCGGG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.