Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Reverse (-)

51506732 .. 51507268

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG293500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGTTACCACAATGTTGTTCATGTTGGTCACCAATCTCATGATCCCCCATCAGGGTATCCATCGGAATATCCTCCACCGCCTGATTTTCTTCCACCGCAGCTGCCGGGGTTTCCGAACCCTCATGAGTTTCATGGCCCTCCTCCGCCTCAGCCACCGCATCAACACCATCAACGCTATCAGGATTACTTCTATGAAGGCTACCCGCCGCCGCATTCAGCTCAGCCCTACAACCGCCAACATTACCAGAACAACCCATATGACTATGACAGTGGCTGCCCTCCTTTCCTCAATTCCTGGTATGCGTTTTCTATCCCACAATATTCATCAATTAAATTGTTATGGTTCCAATTGGATTTCGATTATGTAGTCATCAGATCAGCTGCCTTGATGTGCACTTCTCTGTCAAAAATTTGGCTCACCATCAAGTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

145

Amino Acids

16.97

Weight (kDa)

6.22

Isoelectric Point (pI)

69.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	80, 98, 146, 158, 206, 209, 212, 235
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	53, 54
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	3 cut(s)	103, 221, 383
AluI	AGCT	3 cut(s)	103, 221, 383
Alw21I	GWGCWC	1 cut(s)	398
Alw44I	GTGCAC	1 cut(s)	394
AlwI	GGATC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	276
AoxI	GGCC	1 cut(s)	136
ApaLI	GTGCAC	1 cut(s)	394
ApeKI	GCWGC	4 cut(s)	100, 103, 276, 383
ApoI	RAATTY	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	23, 412
BaeGI	GKGCMC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	398
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	4 cut(s)	90, 112, 263, 370
BccI	CCATC	4 cut(s)	58, 70, 177, 431
BciT130I	CCWGG	1 cut(s)	298
BciVI	GTATCC	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	69
BisI	GCNGC	6 cut(s)	101, 104, 209, 212, 277, 384
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	6 cut(s)	102, 105, 210, 213, 278, 385
Bme1390I	CCNGG	2 cut(s)	108, 298
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	2 cut(s)	108, 298
BmsI	GCATC	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 54
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	2 cut(s)	53, 54
BseMII	CTCAG	2 cut(s)	164, 236
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	4 cut(s)	90, 112, 263, 370
BshFI	GGCC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	53, 54
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	2 cut(s)	43, 377
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	8 cut(s)	80, 98, 146, 158, 206, 209, 212, 235
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	163, 235
BspHI	TCATGA	2 cut(s)	40, 124
BspLI	GGNNCC	1 cut(s)	347
BspPI	GGATC	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	2 cut(s)	43, 377
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	150, 222
BstEII	GGTNACC	1 cut(s)	29
BstKTI	GATC	2 cut(s)	46, 380
BstMBI	GATC	2 cut(s)	43, 377
BstNI	CCWGG	1 cut(s)	298
BstPI	GGTNACC	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	106, 296
BstSLI	GKGCMC	1 cut(s)	398
BstV1I	GCAGC	4 cut(s)	90, 112, 263, 370
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	277
CaiI	CAGNNNCTG	1 cut(s)	276
CciI	TCATGA	2 cut(s)	40, 124
Cfr13I	GGNCC	1 cut(s)	137
CviAII	CATG	4 cut(s)	23, 41, 125, 134
CviJI	RGCY	9 cut(s)	103, 138, 154, 201, 221, 226, 276, 383, 418
CviKI_1	RGCY	9 cut(s)	103, 138, 154, 201, 221, 226, 276, 383, 418
DdeI	CTNAG	2 cut(s)	150, 222
DpnI	GATC	2 cut(s)	45, 379
DpnII	GATC	2 cut(s)	43, 377
EciI	GGCGGA	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	29
EcoO65I	GGTNACC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	296
FaeI	CATG	4 cut(s)	26, 44, 128, 137
FatI	CATG	4 cut(s)	22, 40, 124, 133
FauI	CCCGC	1 cut(s)	213
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	6 cut(s)	101, 104, 209, 212, 277, 384
Fsp4HI	GCNGC	6 cut(s)	101, 104, 209, 212, 277, 384
GluI	GCNGC	6 cut(s)	101, 104, 209, 212, 277, 384
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	4 cut(s)	26, 44, 128, 137
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	2 cut(s)	23, 412
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	3 cut(s)	67, 117, 377
Hpy188III	TCNNGA	3 cut(s)	41, 125, 182
Hpy8I	GTNNAC	1 cut(s)	396
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4V	TGCA	1 cut(s)	396
HpyF3I	CTNAG	2 cut(s)	150, 222
Hsp92II	CATG	4 cut(s)	26, 44, 128, 137
Kzo9I	GATC	2 cut(s)	43, 377
LpnPI	CCDG	7 cut(s)	39, 96, 120, 167, 260, 283, 310
Lsp1109I	GCAGC	4 cut(s)	90, 112, 263, 370
LweI	GCATC	1 cut(s)	169
MaeIII	GTNAC	2 cut(s)	5, 29
MalI	GATC	2 cut(s)	45, 379
MboI	GATC	2 cut(s)	43, 377
MboII	GAAGA	1 cut(s)	83
MfeI	CAATTG	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	5 cut(s)	292, 330, 335, 350, 411
MnlI	CCTC	7 cut(s)	84, 132, 150, 153, 159, 291, 299
MseI	TTAA	2 cut(s)	333, 436
MspA1I	CMGCKG	2 cut(s)	103, 383
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	108, 298
MunI	CAATTG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	298
NciI	CCSGG	1 cut(s)	108
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	2 cut(s)	43, 377
NlaIII	CATG	4 cut(s)	26, 44, 128, 137
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	29
PagI	TCATGA	2 cut(s)	40, 124
PctI	GAATGC	1 cut(s)	214
PkrI	GCNGC	6 cut(s)	102, 105, 210, 213, 278, 385
Psp6I	CCWGG	1 cut(s)	296
PspEI	GGTNACC	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	276
PvuII	CAGCTG	2 cut(s)	103, 383
SaqAI	TTAA	2 cut(s)	333, 436
SatI	GCNGC	6 cut(s)	101, 104, 209, 212, 277, 384
Sau3AI	GATC	2 cut(s)	43, 377
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	108, 298
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	3 cut(s)	105, 223, 385
SfaNI	GCATC	1 cut(s)	169
Sse9I	AATT	5 cut(s)	292, 330, 335, 350, 411
SsiI	CCGC	8 cut(s)	80, 98, 146, 158, 206, 209, 212, 235
SspI	AATATT	1 cut(s)	323
StyD4I	CCNGG	2 cut(s)	106, 296
TaaI	ACNGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	360
TasI	AATT	5 cut(s)	292, 330, 335, 350, 411
TauI	GCSGC	2 cut(s)	211, 214
Tru1I	TTAA	2 cut(s)	333, 436
Tru9I	TTAA	2 cut(s)	333, 436
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	4 cut(s)	100, 103, 276, 383
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	4 cut(s)	11, 122, 210, 315
TspRI	CASTG	1 cut(s)	277
VneI	GTGCAC	1 cut(s)	394
XapI	RAATTY	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.