Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Forward (+)

13382935 .. 13383718

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007083

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGTTACCACAATGTGGTTCATGTTGGTCACCAATCTCATGATCCCCCATCAGGGTATCCATCGGAATATCCTCCACCGCCTGATTTGCTTCCACCGCAGCAGCCGGGGTTTCCGAACCCTCATGAGTTTCATGGCCCTCCTCCGCCTCAGCCACCGCATCAACGCTATCAGGATTACTTCTATGAAGGCTACCCGCAGCCGCATTCAGCTCAGCCCTACAACCGCCAACATTACCAGAACAACCCATATGACTATGACAGTGGCTGCCCTCCTTTCCTCAATTCCTGTTTGGCCGCACTCTGCTGCTGCTGCCTTTTGGAGCGCTGCTGCTTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

114

Amino Acids

13.0

Weight (kDa)

5.73

Isoelectric Point (pI)

87.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AciI	CCGC	8 cut(s)	80, 98, 146, 158, 197, 203, 226, 297
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	16
AfeI	AGCGCT	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	16, 53, 54
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
AlwI	GGATC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	267
Aor51HI	AGCGCT	1 cut(s)	326
AoxI	GGCC	2 cut(s)	136, 294
ApeKI	GCWGC	9 cut(s)	100, 103, 199, 267, 306, 309, 312, 327, 330
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	9 cut(s)	112, 115, 211, 254, 293, 296, 299, 314, 317
BccI	CCATC	2 cut(s)	58, 70
BciVI	GTATCC	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	69
BlpI	GCTNAGC	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 53, 54
BseDI	CCNNGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	3 cut(s)	16, 53, 54
BseMII	CTCAG	2 cut(s)	164, 227
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	9 cut(s)	112, 115, 211, 254, 293, 296, 299, 314, 317
BshFI	GGCC	2 cut(s)	138, 296
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	3 cut(s)	16, 53, 54
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	138, 296
Bsp143I	GATC	1 cut(s)	43
Bsp1720I	GCTNAGC	1 cut(s)	213
BspACI	CCGC	8 cut(s)	80, 98, 146, 158, 197, 203, 226, 297
BspANI	GGCC	2 cut(s)	138, 296
BspCNI	CTCAG	2 cut(s)	163, 226
BspHI	TCATGA	2 cut(s)	40, 124
BspPI	GGATC	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	150, 213
BstEII	GGTNACC	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 97, 312
BstPI	GGTNACC	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	9 cut(s)	112, 115, 211, 254, 293, 296, 299, 314, 317
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	138, 296
BtsIMutI	CAGTG	1 cut(s)	268
CaiI	CAGNNNCTG	1 cut(s)	267
CciI	TCATGA	2 cut(s)	40, 124
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	137
CviAII	CATG	4 cut(s)	23, 41, 125, 134
CviJI	RGCY	9 cut(s)	106, 138, 154, 192, 202, 212, 217, 267, 296
CviKI_1	RGCY	9 cut(s)	106, 138, 154, 192, 202, 212, 217, 267, 296
DdeI	CTNAG	2 cut(s)	150, 213
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DraIII	CACNNNGTG	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	135
Eco47III	AGCGCT	1 cut(s)	326
Eco91I	GGTNACC	1 cut(s)	29
EcoO65I	GGTNACC	1 cut(s)	29
FaeI	CATG	4 cut(s)	26, 44, 128, 137
FaiI	YATR	8 cut(s)	24, 42, 126, 135, 186, 250, 252, 258
FatI	CATG	4 cut(s)	22, 40, 124, 133
FauI	CCCGC	1 cut(s)	204
FauNDI	CATATG	1 cut(s)	250
GlaI	GCGC	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	2 cut(s)	138, 296
HapII	CCGG	1 cut(s)	107
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	4 cut(s)	26, 44, 128, 137
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	67, 117
Hpy188III	TCNNGA	3 cut(s)	41, 125, 173
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 97, 312
HpyF3I	CTNAG	2 cut(s)	150, 213
Hsp92II	CATG	4 cut(s)	26, 44, 128, 137
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	6 cut(s)	39, 96, 120, 158, 251, 301
Lsp1109I	GCAGC	9 cut(s)	112, 115, 211, 254, 293, 296, 299, 314, 317
LweI	GCATC	1 cut(s)	169
MaeIII	GTNAC	2 cut(s)	5, 29
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MluCI	AATT	1 cut(s)	283
MnlI	CCTC	7 cut(s)	84, 132, 150, 153, 159, 282, 290
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	205
MwoI	GCNNNNNNNGC	3 cut(s)	88, 97, 312
NciI	CCSGG	1 cut(s)	108
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	4 cut(s)	26, 44, 128, 137
NmuCI	GTSAC	1 cut(s)	29
PagI	TCATGA	2 cut(s)	40, 124
PctI	GAATGC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	16
PspEI	GGTNACC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	1 cut(s)	214
SfaNI	GCATC	1 cut(s)	169
Sse9I	AATT	1 cut(s)	283
SsiI	CCGC	8 cut(s)	80, 98, 146, 158, 197, 203, 226, 297
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	263
TasI	AATT	1 cut(s)	283
TauI	GCSGC	2 cut(s)	205, 299
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	9 cut(s)	100, 103, 199, 267, 306, 309, 312, 327, 330
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	3 cut(s)	11, 122, 201
TspRI	CASTG	1 cut(s)	268
Van91I	CCANNNNNTGG	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.