Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Forward (+)

91307711 .. 91309581

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG696300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTCGAACTGGTAATTAATTGGTTGCAAAAATCTGTATCCGATCGGGCGACCCGAGAAGCAGGAGTGAGGAAGACAGAGATGAGCTACCACCAAGGACCTCAAGAACCCTACCCTCCGCCACCACCACCACCAGGCTACCCCTATCCCCAACCAGGGCCGCCGGTATCAGCGCCGCCCTACGAAGGCTACCCTCCGCCGCCGCCTCCTCCGGGGTATCCTCCTCACGGATACGGCCCTCCTCCGCCGCGTCCTCCGCCGTACGAGGGCTACCAAGGCTATTTCAACGGGGGTTACCCTCCGCCGCAATACCAGCAGCCCTGTTACCACGATCATCACCATTACCAGGCTCAGGATGATGGCTGCGTCTCTTTCTTGAGAGGCTGGTATGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

132

Amino Acids

14.9

Weight (kDa)

5.78

Isoelectric Point (pI)

70.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	9 cut(s)	134, 155, 156, 185, 212, 227, 266, 346, 352
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	3 cut(s)	133, 154, 345
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	2 cut(s)	158, 235
ApeKI	GCWGC	2 cut(s)	316, 363
AseI	ATTAAT	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	3 cut(s)	98, 158, 236
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	329
AvaI	CYCGRG	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	328, 350
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	2 cut(s)	244, 250
BciT130I	CCWGG	3 cut(s)	135, 156, 347
BciVI	GTATCC	3 cut(s)	49, 224, 228
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	373
BfoI	RGCGCY	1 cut(s)	176
BfuI	GTATCC	3 cut(s)	49, 224, 228
BisI	GCNGC	8 cut(s)	161, 176, 200, 203, 248, 305, 317, 364
BlsI	GCNGC	8 cut(s)	162, 177, 201, 204, 249, 306, 318, 365
Bme1390I	CCNGG	4 cut(s)	135, 156, 213, 347
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	3 cut(s)	98, 158, 236
BmrFI	CCNGG	4 cut(s)	135, 156, 213, 347
BpiI	GAAGAC	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	2 cut(s)	87, 397
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	4 cut(s)	94, 155, 212, 274
Bsc4I	CCNNNNNNNGG	9 cut(s)	134, 155, 156, 185, 212, 227, 266, 346, 352
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	15
BseBI	CCWGG	3 cut(s)	135, 156, 347
BseDI	CCNNGG	4 cut(s)	94, 155, 212, 274
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	9 cut(s)	134, 155, 156, 185, 212, 227, 266, 346, 352
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	3 cut(s)	198, 213, 231
BseXI	GCAGC	2 cut(s)	328, 350
Bsh1236I	CGCG	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	160, 237
BsiEI	CGRYCG	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	164, 212
BsiWI	CGTACG	1 cut(s)	261
BslI	CCNNNNNNNGG	9 cut(s)	134, 155, 156, 185, 212, 227, 266, 346, 352
BsmAI	GTCTC	1 cut(s)	373
BsmBI	CGTCTC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	160, 237
BsoBI	CYCGRG	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	43, 331
BspANI	GGCC	2 cut(s)	160, 237
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	4 cut(s)	94, 155, 212, 274
BssMI	GATC	2 cut(s)	43, 331
BssT1I	CCWWGG	2 cut(s)	94, 274
Bst2UI	CCWGG	3 cut(s)	135, 156, 347
BstDEI	CTNAG	1 cut(s)	351
BstEII	GGTNACC	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	46, 334
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	2 cut(s)	43, 331
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 276, 313
BstNI	CCWGG	3 cut(s)	135, 156, 347
BstPI	GGTNACC	1 cut(s)	293
BstSCI	CCNGG	4 cut(s)	133, 154, 211, 345
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	328, 350
BstV2I	GAAGAC	1 cut(s)	80
BsuI	GTATCC	3 cut(s)	49, 224, 228
BsuRI	GGCC	2 cut(s)	160, 237
BtsCI	GGATG	1 cut(s)	361
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	3 cut(s)	98, 158, 236
CseI	GACGC	2 cut(s)	239, 355
Csp6I	GTAC	1 cut(s)	262
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	2 cut(s)	45, 333
DpnII	GATC	2 cut(s)	43, 331
EciI	GGCGGA	5 cut(s)	108, 186, 234, 246, 291
Eco130I	CCWWGG	2 cut(s)	94, 274
Eco47I	GGWCC	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	54
Eco91I	GGTNACC	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	293
EcoRII	CCWGG	3 cut(s)	133, 154, 345
EcoT14I	CCWWGG	2 cut(s)	94, 274
ErhI	CCWWGG	2 cut(s)	94, 274
Esp3I	CGTCTC	1 cut(s)	373
FaiI	YATR	1 cut(s)	390
Fnu4HI	GCNGC	8 cut(s)	161, 176, 200, 203, 248, 305, 317, 364
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	8 cut(s)	161, 176, 200, 203, 248, 305, 317, 364
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	8 cut(s)	161, 176, 200, 203, 248, 305, 317, 364
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	160, 237
HapII	CCGG	2 cut(s)	164, 212
HgaI	GACGC	2 cut(s)	239, 355
HhaI	GCGC	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HpaII	CCGG	2 cut(s)	164, 212
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	3 cut(s)	104, 353, 376
HpyAV	CCTTC	1 cut(s)	179
HpyCH4V	TGCA	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 276, 313
HpyF3I	CTNAG	1 cut(s)	351
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	43, 331
Lsp1109I	GCAGC	2 cut(s)	328, 350
MaeIII	GTNAC	2 cut(s)	293, 323
MalI	GATC	2 cut(s)	45, 333
MboI	GATC	2 cut(s)	43, 331
MboII	GAAGA	1 cut(s)	85
MluCI	AATT	2 cut(s)	15, 19
MseI	TTAA	1 cut(s)	18
MspI	CCGG	2 cut(s)	164, 212
MspR9I	CCNGG	4 cut(s)	135, 156, 213, 347
MvaI	CCWGG	3 cut(s)	135, 156, 347
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	3 cut(s)	256, 276, 313
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	2 cut(s)	43, 331
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
Pfl23II	CGTACG	1 cut(s)	261
PkrI	GCNGC	8 cut(s)	162, 177, 201, 204, 249, 306, 318, 365
Ple19I	CGATCG	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	3 cut(s)	133, 154, 345
PspEI	GGTNACC	1 cut(s)	293
PspGI	CCWGG	3 cut(s)	133, 154, 345
PspLI	CGTACG	1 cut(s)	261
PspPI	GGNCC	3 cut(s)	98, 158, 236
PspPPI	RGGWCCY	1 cut(s)	98
PvuI	CGATCG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	8 cut(s)	161, 176, 200, 203, 248, 305, 317, 364
Sau3AI	GATC	2 cut(s)	43, 331
Sau96I	GGNCC	3 cut(s)	98, 158, 236
ScrFI	CCNGG	4 cut(s)	135, 156, 213, 347
SetI	ASST	2 cut(s)	89, 103
SinI	GGWCC	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	102, 376
SmoI	CTYRAG	2 cut(s)	102, 376
Sse9I	AATT	2 cut(s)	15, 19
StyD4I	CCNGG	4 cut(s)	133, 154, 211, 345
StyI	CCWWGG	2 cut(s)	94, 274
TaqI	TCGA	1 cut(s)	6
TasI	AATT	2 cut(s)	15, 19
TauI	GCSGC	6 cut(s)	163, 178, 202, 205, 250, 307
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	2 cut(s)	316, 363
TspGWI	ACGGA	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	98
VspI	ATTAAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.