Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Forward (+)

89161972 .. 89163799

Gene Structure 1828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG682900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAGCTACCACCAAGGACCTCAAGAACCCTACCCTCCGCCACCGCCACCAGGCTACCCCTATCCCCAACCAGGCCCGCCGGCATCAGCGCCGCCCTACGAAGGCTACCCTCCGCCGCCGCCTCCTCCGGGGTATCCTCCTCACGGATACGGCCCTCCTCCGCCGCGTCCTCCTCCGTACGAGGGCTACCAAGGCTATTTCAACGGGGGTTACCCTCCGCCGCAATACCAGCAGCCCTGTTACCACGATCATCACCATTACCAGGCTCAGGATGATGGCTGCGTCTCTTTCTTGAGAGGCTGGTATGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

104

Amino Acids

11.67

Weight (kDa)

5.46

Isoelectric Point (pI)

80.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	166
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	8 cut(s)	50, 71, 101, 128, 143, 182, 262, 268
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	3 cut(s)	49, 70, 261
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw26I	GTCTC	1 cut(s)	289
AoxI	GGCC	2 cut(s)	73, 151
ApeKI	GCWGC	2 cut(s)	232, 279
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	3 cut(s)	17, 74, 152
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	244, 266
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	3 cut(s)	51, 72, 263
BciVI	GTATCC	2 cut(s)	140, 144
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	92
BfuI	GTATCC	2 cut(s)	140, 144
BisI	GCNGC	7 cut(s)	92, 116, 119, 164, 221, 233, 280
BlsI	GCNGC	7 cut(s)	93, 117, 120, 165, 222, 234, 281
Bme1390I	CCNGG	4 cut(s)	51, 72, 129, 263
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	3 cut(s)	17, 74, 152
BmrFI	CCNGG	4 cut(s)	51, 72, 129, 263
BmsI	GCATC	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	6, 313
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	3 cut(s)	13, 128, 190
Bsc4I	CCNNNNNNNGG	8 cut(s)	50, 71, 101, 128, 143, 182, 262, 268
Bse118I	RCCGGY	1 cut(s)	79
BseBI	CCWGG	3 cut(s)	51, 72, 263
BseDI	CCNNGG	3 cut(s)	13, 128, 190
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	8 cut(s)	50, 71, 101, 128, 143, 182, 262, 268
BseMII	CTCAG	1 cut(s)	281
BseRI	GAGGAG	4 cut(s)	114, 129, 147, 162
BseXI	GCAGC	2 cut(s)	244, 266
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	75, 153
BsiSI	CCGG	2 cut(s)	80, 128
BsiWI	CGTACG	1 cut(s)	177
BslI	CCNNNNNNNGG	8 cut(s)	50, 71, 101, 128, 143, 182, 262, 268
BsmAI	GTCTC	1 cut(s)	289
BsmBI	CGTCTC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	75, 153
Bsp143I	GATC	1 cut(s)	247
BspANI	GGCC	2 cut(s)	75, 153
BspCNI	CTCAG	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	13, 128, 190
BssMI	GATC	1 cut(s)	247
BssT1I	CCWWGG	2 cut(s)	13, 190
Bst2UI	CCWGG	3 cut(s)	51, 72, 263
BstC8I	GCNNGC	2 cut(s)	77, 81
BstDEI	CTNAG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 229
BstNI	CCWGG	3 cut(s)	51, 72, 263
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	4 cut(s)	49, 70, 127, 261
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	244, 266
BsuI	GTATCC	2 cut(s)	140, 144
BsuRI	GGCC	2 cut(s)	75, 153
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	2 cut(s)	77, 81
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	3 cut(s)	17, 74, 152
CseI	GACGC	2 cut(s)	155, 271
Csp6I	GTAC	1 cut(s)	178
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
EciI	GGCGGA	4 cut(s)	27, 102, 150, 207
Eco130I	CCWWGG	2 cut(s)	13, 190
Eco47I	GGWCC	1 cut(s)	17
Eco91I	GGTNACC	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	209
EcoRII	CCWGG	3 cut(s)	49, 70, 261
EcoT14I	CCWWGG	2 cut(s)	13, 190
ErhI	CCWWGG	2 cut(s)	13, 190
Esp3I	CGTCTC	1 cut(s)	289
FaiI	YATR	1 cut(s)	306
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	7 cut(s)	92, 116, 119, 164, 221, 233, 280
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	7 cut(s)	92, 116, 119, 164, 221, 233, 280
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	7 cut(s)	92, 116, 119, 164, 221, 233, 280
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	75, 153
HapII	CCGG	2 cut(s)	80, 128
HgaI	GACGC	2 cut(s)	155, 271
HhaI	GCGC	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	80, 128
HphI	GGTGA	1 cut(s)	245
Hpy188III	TCNNGA	3 cut(s)	23, 269, 292
HpyAV	CCTTC	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 229
HpyF3I	CTNAG	1 cut(s)	267
HspAI	GCGC	1 cut(s)	89
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	247
Lsp1109I	GCAGC	2 cut(s)	244, 266
LweI	GCATC	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	209, 239
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MroNI	GCCGGC	1 cut(s)	79
MspI	CCGG	2 cut(s)	80, 128
MspR9I	CCNGG	4 cut(s)	51, 72, 129, 263
MvaI	CCWGG	3 cut(s)	51, 72, 263
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	192, 229
NaeI	GCCGGC	1 cut(s)	81
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	247
NgoMIV	GCCGGC	1 cut(s)	79
PdiI	GCCGGC	1 cut(s)	81
Pfl23II	CGTACG	1 cut(s)	177
PkrI	GCNGC	7 cut(s)	93, 117, 120, 165, 222, 234, 281
PpuMI	RGGWCCY	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	17
Psp6I	CCWGG	3 cut(s)	49, 70, 261
PspEI	GGTNACC	1 cut(s)	209
PspGI	CCWGG	3 cut(s)	49, 70, 261
PspLI	CGTACG	1 cut(s)	177
PspPI	GGNCC	3 cut(s)	17, 74, 152
PspPPI	RGGWCCY	1 cut(s)	17
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SatI	GCNGC	7 cut(s)	92, 116, 119, 164, 221, 233, 280
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	3 cut(s)	17, 74, 152
ScrFI	CCNGG	4 cut(s)	51, 72, 129, 263
SetI	ASST	2 cut(s)	8, 22
SfaNI	GCATC	1 cut(s)	92
SinI	GGWCC	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	21, 292
SmoI	CTYRAG	2 cut(s)	21, 292
StyD4I	CCNGG	4 cut(s)	49, 70, 127, 261
StyI	CCWWGG	2 cut(s)	13, 190
TauI	GCSGC	5 cut(s)	94, 118, 121, 166, 223
TseI	GCWGC	2 cut(s)	232, 279
TspGWI	ACGGA	2 cut(s)	159, 165
VpaK11BI	GGWCC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.