Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000405.1

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Forward (+)

122011 .. 123303

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000405.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgagctaccaccaaggacctcaagaaccctaccctccgccaccaccaccaccaggctacccctatccccaacctggcccgccggtatcagcgccgccctacgaaggctaccctccgccgccgcctcctccggggtatcctcctcacggatacggccctcctccgccgcgtcctccgccgtacgagggctaccaaggctatttcaacgggggttaccctccgccgcaataccagcagccctgttaccacgatcatcaccattaccaggctcaggatgatggctgcgtctctttcttgagaggctgtttgggtacactattctgctgttgtttgctagaggaatgctgcttctttttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

119

Amino Acids

13.26

Weight (kDa)

5.23

Isoelectric Point (pI)

79.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	169
AfaI	GTAC	2 cut(s)	182, 313
AfiI	CCNNNNNNNGG	8 cut(s)	53, 74, 104, 131, 146, 185, 265, 271
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	3 cut(s)	52, 73, 264
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	2 cut(s)	76, 154
ApeKI	GCWGC	3 cut(s)	235, 282, 345
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	3 cut(s)	17, 77, 155
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	247, 269, 332
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	2 cut(s)	163, 169
BciT130I	CCWGG	3 cut(s)	54, 75, 266
BciVI	GTATCC	2 cut(s)	143, 147
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	95
BfuI	GTATCC	2 cut(s)	143, 147
BisI	GCNGC	8 cut(s)	95, 119, 122, 167, 224, 236, 283, 346
BlsI	GCNGC	8 cut(s)	96, 120, 123, 168, 225, 237, 284, 347
Bme1390I	CCNGG	4 cut(s)	54, 75, 132, 266
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	3 cut(s)	17, 77, 155
BmrFI	CCNGG	4 cut(s)	54, 75, 132, 266
Bpu10I	CCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	6, 316
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	13, 131, 193
Bsc4I	CCNNNNNNNGG	8 cut(s)	53, 74, 104, 131, 146, 185, 265, 271
Bse118I	RCCGGY	1 cut(s)	82
BseBI	CCWGG	3 cut(s)	54, 75, 266
BseDI	CCNNGG	3 cut(s)	13, 131, 193
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	8 cut(s)	53, 74, 104, 131, 146, 185, 265, 271
BseMII	CTCAG	1 cut(s)	284
BseRI	GAGGAG	3 cut(s)	117, 132, 150
BseXI	GCAGC	3 cut(s)	247, 269, 332
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	78, 156
BsiSI	CCGG	2 cut(s)	83, 131
BsiWI	CGTACG	1 cut(s)	180
BslI	CCNNNNNNNGG	8 cut(s)	53, 74, 104, 131, 146, 185, 265, 271
BsmAI	GTCTC	1 cut(s)	292
BsmBI	CGTCTC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	78, 156
Bsp143I	GATC	1 cut(s)	250
BspANI	GGCC	2 cut(s)	78, 156
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	13, 131, 193
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	2 cut(s)	13, 193
Bst2UI	CCWGG	3 cut(s)	54, 75, 266
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	270
BstEII	GGTNACC	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	280
BstFNI	CGCG	1 cut(s)	169
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 195, 232
BstNI	CCWGG	3 cut(s)	54, 75, 266
BstPI	GGTNACC	1 cut(s)	212
BstSCI	CCNGG	4 cut(s)	52, 73, 130, 264
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	3 cut(s)	247, 269, 332
BsuI	GTATCC	2 cut(s)	143, 147
BsuRI	GGCC	2 cut(s)	78, 156
BtsCI	GGATG	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	80
CfoI	GCGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	3 cut(s)	17, 77, 155
CseI	GACGC	2 cut(s)	158, 274
Csp6I	GTAC	2 cut(s)	181, 312
CviQI	GTAC	2 cut(s)	181, 312
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
EciI	GGCGGA	5 cut(s)	27, 105, 153, 165, 210
Eco130I	CCWWGG	2 cut(s)	13, 193
Eco47I	GGWCC	1 cut(s)	17
Eco91I	GGTNACC	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	212
EcoRII	CCWGG	3 cut(s)	52, 73, 264
EcoT14I	CCWWGG	2 cut(s)	13, 193
ErhI	CCWWGG	2 cut(s)	13, 193
Esp3I	CGTCTC	1 cut(s)	292
FauI	CCCGC	1 cut(s)	87
Fnu4HI	GCNGC	8 cut(s)	95, 119, 122, 167, 224, 236, 283, 346
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	8 cut(s)	95, 119, 122, 167, 224, 236, 283, 346
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	8 cut(s)	95, 119, 122, 167, 224, 236, 283, 346
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	78, 156
HapII	CCGG	2 cut(s)	83, 131
HgaI	GACGC	2 cut(s)	158, 274
HhaI	GCGC	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HpaII	CCGG	2 cut(s)	83, 131
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188III	TCNNGA	3 cut(s)	23, 272, 295
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 195, 232
HpyF3I	CTNAG	1 cut(s)	270
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	250
Lsp1109I	GCAGC	3 cut(s)	247, 269, 332
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	2 cut(s)	212, 242
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MspI	CCGG	2 cut(s)	83, 131
MspR9I	CCNGG	4 cut(s)	54, 75, 132, 266
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	3 cut(s)	54, 75, 266
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	175, 195, 232
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	250
PctI	GAATGC	1 cut(s)	347
Pfl23II	CGTACG	1 cut(s)	180
PkrI	GCNGC	8 cut(s)	96, 120, 123, 168, 225, 237, 284, 347
PpuMI	RGGWCCY	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	17
Psp6I	CCWGG	3 cut(s)	52, 73, 264
PspEI	GGTNACC	1 cut(s)	212
PspGI	CCWGG	3 cut(s)	52, 73, 264
PspLI	CGTACG	1 cut(s)	180
PspPI	GGNCC	3 cut(s)	17, 77, 155
PspPPI	RGGWCCY	1 cut(s)	17
RsaI	GTAC	2 cut(s)	182, 313
RsaNI	GTAC	2 cut(s)	181, 312
SatI	GCNGC	8 cut(s)	95, 119, 122, 167, 224, 236, 283, 346
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	3 cut(s)	17, 77, 155
ScrFI	CCNGG	4 cut(s)	54, 75, 132, 266
SetI	ASST	3 cut(s)	8, 22, 76
SinI	GGWCC	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	21, 295
SmoI	CTYRAG	2 cut(s)	21, 295
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	4 cut(s)	52, 73, 130, 264
StyI	CCWWGG	2 cut(s)	13, 193
TauI	GCSGC	5 cut(s)	97, 121, 124, 169, 226
TseI	GCWGC	3 cut(s)	235, 282, 345
TspGWI	ACGGA	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	17
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.