Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Reverse (-)

23369520 .. 23370940

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G218800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAGTTACCAACACATCCATGTTCAACATGAACAGCATCCCCCACCAGGGTACCCACAAGAGTATCCTCAAGCGCCGGACTTTCCACCTCCACCGCCACGGCCGGGGTTCCCAAATCCATCTCCTCCGCCACAAGAATATGGATATCAGGGTTACTTCTATGAAGGGTACCAACCCCCACTATCAGCTGCCCCTCCTCCCCTCCGCCCATACCACCACTACCACCAAGATGACTATGCCTGCGATTCTCTCTTTAGAAGCTGTTTGGCTGCACTTTGCTGCTGCTGCTTGTTGGAGCGTTGCTGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

104

Amino Acids

11.85

Weight (kDa)

5.68

Isoelectric Point (pI)

100.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	51, 168
AccB1I	GGYRCC	2 cut(s)	51, 168
AciI	CCGC	3 cut(s)	95, 128, 205
AcoI	YGGCCR	1 cut(s)	101
AfaI	GTAC	2 cut(s)	53, 170
AfiI	CCNNNNNNNGG	3 cut(s)	47, 48, 104
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	188, 261
AluI	AGCT	2 cut(s)	188, 261
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	6 cut(s)	188, 269, 279, 282, 285, 303
Asp718I	GGTACC	2 cut(s)	51, 168
AspLEI	GCGC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	105
BaeI	ACNNNNGTAYC	4 cut(s)	35, 47, 68, 80
BanI	GGYRCC	2 cut(s)	51, 168
BbvI	GCAGC	6 cut(s)	175, 256, 266, 269, 272, 290
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	48
BciVI	GTATCC	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	105
BfaI	CTAG	1 cut(s)	310
BfoI	RGCGCY	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	75
BisI	GCNGC	6 cut(s)	189, 270, 280, 283, 286, 304
BlsI	GCNGC	6 cut(s)	190, 271, 281, 284, 287, 305
Bme1390I	CCNGG	2 cut(s)	48, 105
BmiI	GGNNCC	3 cut(s)	53, 110, 170
BmrFI	CCNGG	2 cut(s)	48, 105
BmsI	GCATC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	47, 98, 104
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 48, 104
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	3 cut(s)	47, 98, 104
BseGI	GGATG	2 cut(s)	15, 37
BseLI	CCNNNNNNNGG	3 cut(s)	47, 48, 104
BseRI	GAGGAG	2 cut(s)	114, 186
BseX3I	CGGCCG	1 cut(s)	101
BseXI	GCAGC	6 cut(s)	175, 256, 266, 269, 272, 290
BsgI	GTGCAG	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	2 cut(s)	51, 168
BsiEI	CGRYCG	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	77, 104
BslI	CCNNNNNNNGG	3 cut(s)	47, 48, 104
BsnI	GGCC	1 cut(s)	103
BspACI	CCGC	3 cut(s)	95, 128, 205
BspANI	GGCC	1 cut(s)	103
BspLI	GGNNCC	3 cut(s)	53, 110, 170
BspT107I	GGYRCC	2 cut(s)	51, 168
BssECI	CCNNGG	3 cut(s)	47, 98, 104
Bst2UI	CCWGG	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	241
BstDSI	CCRYGG	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	15, 37
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	2 cut(s)	46, 103
BstV1I	GCAGC	6 cut(s)	175, 256, 266, 269, 272, 290
BstZI	CGGCCG	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	15, 37
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	52, 169
CviAII	CATG	2 cut(s)	20, 29
CviJI	RGCY	4 cut(s)	103, 188, 261, 269
CviKI_1	RGCY	4 cut(s)	103, 188, 261, 269
CviQI	GTAC	2 cut(s)	52, 169
EaeI	YGGCCR	1 cut(s)	101
EagI	CGGCCG	1 cut(s)	101
EciI	GGCGGA	2 cut(s)	117, 194
EclXI	CGGCCG	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	146
Eco52I	CGGCCG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	146
FaeI	CATG	2 cut(s)	23, 32
FaiI	YATR	6 cut(s)	21, 30, 141, 162, 211, 237
FatI	CATG	2 cut(s)	19, 28
Fnu4HI	GCNGC	6 cut(s)	189, 270, 280, 283, 286, 304
FokI	GGATG	2 cut(s)	2, 24
Fsp4HI	GCNGC	6 cut(s)	189, 270, 280, 283, 286, 304
FspBI	CTAG	1 cut(s)	310
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	6 cut(s)	189, 270, 280, 283, 286, 304
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	2 cut(s)	77, 104
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	23, 32
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	2 cut(s)	77, 104
HpyAV	CCTTC	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	23, 32
HspAI	GCGC	1 cut(s)	74
KpnI	GGTACC	2 cut(s)	55, 172
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	6 cut(s)	33, 60, 90, 117, 134, 253
Lsp1109I	GCAGC	6 cut(s)	175, 256, 266, 269, 272, 290
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	5, 152
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	6 cut(s)	78, 99, 135, 204, 207, 212
MslI	CAYNNNNRTG	2 cut(s)	18, 228
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	77, 104
MspR9I	CCNGG	2 cut(s)	48, 105
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	285
NciI	CCSGG	1 cut(s)	105
NlaIII	CATG	2 cut(s)	23, 32
NlaIV	GGNNCC	3 cut(s)	53, 110, 170
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	6 cut(s)	190, 271, 281, 284, 287, 305
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	3 cut(s)	53, 110, 170
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	53, 170
RsaNI	GTAC	2 cut(s)	52, 169
RseI	CAYNNNNRTG	2 cut(s)	18, 228
SatI	GCNGC	6 cut(s)	189, 270, 280, 283, 286, 304
ScrFI	CCNGG	2 cut(s)	48, 105
SetI	ASST	3 cut(s)	91, 190, 263
SfaNI	GCATC	1 cut(s)	46
SmiMI	CAYNNNNRTG	2 cut(s)	18, 228
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
SsiI	CCGC	3 cut(s)	95, 128, 205
SspMI	CTAG	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	46, 103
TfiI	GAWTC	1 cut(s)	245
TseI	GCWGC	6 cut(s)	188, 269, 279, 282, 285, 303
TspDTI	ATGAA	2 cut(s)	45, 177
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.