Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Reverse (-)

398597 .. 400590

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1005100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGTTACCAGAAAGCTCCTCAAGAACCCTACCCTCCACCAGGATATCAGTATCCGCCTCCTGGGTACCCATCAGCTCCGCCACCACCGCCACCGTACGAAGGGTACCCTCCTCCGCCGCCTCCACCGTACGAAGGCTATCCACCACCACCACCACCTGGGTATCCTCACGGATATGGTCCGCCTCCGCCCCCGCGTGGTCCGCCGTACGAGGGGTACCAAGGGTATTTCAATCAGGGGTACCCTCCGCAACCTCCTCCTCCTCCGCAGCAATACCAGCACTATCACTGTGAGCATAACAATTACCAAGGCGAAGATGGTTGTATGCCTTTCTTACGAGGCTGTTTGGCTGCGCTATGCTGCTGTTGTTTGCTGGAGGAGTGCTGCTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

132

Amino Acids

14.59

Weight (kDa)

4.89

Isoelectric Point (pI)

90.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	4 cut(s)	66, 105, 216, 240
AccB1I	GGYRCC	4 cut(s)	66, 105, 216, 240
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccII	CGCG	1 cut(s)	196
AfaI	GTAC	7 cut(s)	68, 98, 107, 131, 209, 218, 242
AfiI	CCNNNNNNNGG	7 cut(s)	41, 62, 101, 134, 158, 197, 212
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	3 cut(s)	40, 61, 157
AluBI	AGCT	2 cut(s)	17, 77
AluI	AGCT	2 cut(s)	17, 77
ApeKI	GCWGC	4 cut(s)	268, 350, 360, 384
Asp718I	GGTACC	4 cut(s)	66, 105, 216, 240
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	179, 200
AvaII	GGWCC	2 cut(s)	179, 200
BaeI	ACNNNNGTAYC	2 cut(s)	146, 179
BanI	GGYRCC	4 cut(s)	66, 105, 216, 240
BbvI	GCAGC	4 cut(s)	280, 337, 347, 371
BccI	CCATC	2 cut(s)	79, 311
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	3 cut(s)	42, 63, 159
BciVI	GTATCC	2 cut(s)	63, 174
BfuI	GTATCC	2 cut(s)	63, 174
BisI	GCNGC	5 cut(s)	119, 269, 351, 361, 385
BlsI	GCNGC	5 cut(s)	120, 270, 352, 362, 386
Bme1390I	CCNGG	3 cut(s)	42, 63, 159
Bme18I	GGWCC	2 cut(s)	179, 200
BmgT120I	GGNCC	2 cut(s)	179, 200
BmiI	GGNNCC	4 cut(s)	68, 107, 218, 242
BmrFI	CCNGG	3 cut(s)	42, 63, 159
BpmI	CTGGAG	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	6
BsaJI	CCNNGG	4 cut(s)	62, 158, 220, 307
Bsc4I	CCNNNNNNNGG	7 cut(s)	41, 62, 101, 134, 158, 197, 212
BseBI	CCWGG	3 cut(s)	42, 63, 159
BseDI	CCNNGG	4 cut(s)	62, 158, 220, 307
BseLI	CCNNNNNNNGG	7 cut(s)	41, 62, 101, 134, 158, 197, 212
BseRI	GAGGAG	6 cut(s)	9, 102, 246, 249, 252, 392
BseXI	GCAGC	4 cut(s)	280, 337, 347, 371
Bsh1236I	CGCG	1 cut(s)	196
BshNI	GGYRCC	4 cut(s)	66, 105, 216, 240
BsiWI	CGTACG	3 cut(s)	96, 129, 207
BslI	CCNNNNNNNGG	7 cut(s)	41, 62, 101, 134, 158, 197, 212
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	4 cut(s)	68, 107, 218, 242
BspT107I	GGYRCC	4 cut(s)	66, 105, 216, 240
BssECI	CCNNGG	4 cut(s)	62, 158, 220, 307
BssT1I	CCWWGG	2 cut(s)	220, 307
Bst2UI	CCWGG	3 cut(s)	42, 63, 159
Bst4CI	ACNGT	3 cut(s)	96, 129, 290
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 202, 277
BstNI	CCWGG	3 cut(s)	42, 63, 159
BstSCI	CCNGG	3 cut(s)	40, 61, 157
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	4 cut(s)	280, 337, 347, 371
BsuI	GTATCC	2 cut(s)	63, 174
BtsIMutI	CAGTG	1 cut(s)	286
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	179, 200
Csp6I	GTAC	7 cut(s)	67, 97, 106, 130, 208, 217, 241
CviJI	RGCY	5 cut(s)	17, 77, 138, 342, 350
CviKI_1	RGCY	5 cut(s)	17, 77, 138, 342, 350
CviQI	GTAC	7 cut(s)	67, 97, 106, 130, 208, 217, 241
EciI	GGCGGA	6 cut(s)	45, 69, 105, 171, 177, 192
Eco130I	CCWWGG	2 cut(s)	220, 307
Eco32I	GATATC	1 cut(s)	47
Eco47I	GGWCC	2 cut(s)	179, 200
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoRII	CCWGG	3 cut(s)	40, 61, 157
EcoRV	GATATC	1 cut(s)	47
EcoT14I	CCWWGG	2 cut(s)	220, 307
ErhI	CCWWGG	2 cut(s)	220, 307
FaiI	YATR	4 cut(s)	177, 297, 326, 358
FauI	CCCGC	1 cut(s)	201
Fnu4HI	GCNGC	5 cut(s)	119, 269, 351, 361, 385
Fsp4HI	GCNGC	5 cut(s)	119, 269, 351, 361, 385
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	5 cut(s)	119, 269, 351, 361, 385
GsuI	CTGGAG	1 cut(s)	395
HhaI	GCGC	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
Hpy188III	TCNNGA	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	95, 128
HpyCH4III	ACNGT	3 cut(s)	96, 129, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 202, 277
HspAI	GCGC	1 cut(s)	353
KpnI	GGTACC	4 cut(s)	70, 109, 220, 244
LmnI	GCTCC	2 cut(s)	22, 82
Lsp1109I	GCAGC	4 cut(s)	280, 337, 347, 371
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	326
MluCI	AATT	1 cut(s)	301
MslI	CAYNNNNRTG	1 cut(s)	174
MspR9I	CCNGG	3 cut(s)	42, 63, 159
MvaI	CCWGG	3 cut(s)	42, 63, 159
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	3 cut(s)	88, 202, 277
NlaIV	GGNNCC	4 cut(s)	68, 107, 218, 242
Pfl23II	CGTACG	3 cut(s)	96, 129, 207
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	5 cut(s)	120, 270, 352, 362, 386
Psp6I	CCWGG	3 cut(s)	40, 61, 157
PspGI	CCWGG	3 cut(s)	40, 61, 157
PspLI	CGTACG	3 cut(s)	96, 129, 207
PspN4I	GGNNCC	4 cut(s)	68, 107, 218, 242
PspPI	GGNCC	2 cut(s)	179, 200
RsaI	GTAC	7 cut(s)	68, 98, 107, 131, 209, 218, 242
RsaNI	GTAC	7 cut(s)	67, 97, 106, 130, 208, 217, 241
RseI	CAYNNNNRTG	1 cut(s)	174
SatI	GCNGC	5 cut(s)	119, 269, 351, 361, 385
Sau96I	GGNCC	2 cut(s)	179, 200
ScrFI	CCNGG	3 cut(s)	42, 63, 159
SetI	ASST	4 cut(s)	19, 79, 160, 256
SinI	GGWCC	2 cut(s)	179, 200
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	1 cut(s)	301
StyD4I	CCNGG	3 cut(s)	40, 61, 157
StyI	CCWWGG	2 cut(s)	220, 307
TaaI	ACNGT	3 cut(s)	96, 129, 290
TasI	AATT	1 cut(s)	301
TauI	GCSGC	1 cut(s)	121
TscAI	CASTG	1 cut(s)	293
TseI	GCWGC	4 cut(s)	268, 350, 360, 384
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	293
Van91I	CCANNNNNTGG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	179, 200
XagI	CCTNNNNNAGG	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.