Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Reverse (-)

367646 .. 368850

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAGCTACCACCAAGGCCCTCAAGAACCCTACCCTCCGCCACCGCCACCACCACCACCAGGCTACCCCTATCCCCAACCAGGCCCGCCGGGATCAGCGCCGCCCTACGAAGGCTACCCTCCGCCGCCGCCTCCGGGGTACCCTCCTCACGGATACGGCCCTCCTCCGCCACGTCCTCCGCCGTACGAGGGCTACCAAGGCTATTTCAACGGGGGTTACCCTCCGCCGCAATACCAGCAGCCCTGTTACCACGATCATCACCATTACCAGGCTCAGGATGATGGCTGCATCTCTTTCTTGAGAGGCTGTTTTGGTACACTATTCTGCTGTTGTTTGCTAGAGGAATGCTGCTTCTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

120

Amino Acids

13.36

Weight (kDa)

5.23

Isoelectric Point (pI)

78.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	100
AfaI	GTAC	3 cut(s)	140, 185, 316
AfiI	CCNNNNNNNGG	8 cut(s)	59, 80, 110, 134, 149, 188, 268, 274
AgsI	TTSAA	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	173
AjnI	CCWGG	3 cut(s)	58, 79, 267
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
AlwI	GGATC	1 cut(s)	100
AoxI	GGCC	3 cut(s)	16, 82, 157
ApeKI	GCWGC	3 cut(s)	238, 285, 348
Asp718I	GGTACC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	3 cut(s)	17, 83, 158
AsuC2I	CCSGG	2 cut(s)	90, 135
AsuHPI	GGTGA	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	250, 272, 335
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	2 cut(s)	166, 172
BciT130I	CCWGG	3 cut(s)	60, 81, 269
BciVI	GTATCC	1 cut(s)	146
BcnI	CCSGG	2 cut(s)	90, 135
BfaI	CTAG	1 cut(s)	338
BfoI	RGCGCY	1 cut(s)	101
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	7 cut(s)	101, 125, 128, 227, 239, 286, 349
BlsI	GCNGC	7 cut(s)	102, 126, 129, 228, 240, 287, 350
Bme1390I	CCNGG	5 cut(s)	60, 81, 90, 135, 269
BmgBI	CACGTC	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	17, 83, 158
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	5 cut(s)	60, 81, 90, 135, 269
BmsI	GCATC	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	2 cut(s)	6, 319
BpuMI	CCSGG	2 cut(s)	90, 135
BsaJI	CCNNGG	3 cut(s)	13, 134, 196
Bsc4I	CCNNNNNNNGG	8 cut(s)	59, 80, 110, 134, 149, 188, 268, 274
BseBI	CCWGG	3 cut(s)	60, 81, 269
BseDI	CCNNGG	3 cut(s)	13, 134, 196
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	8 cut(s)	59, 80, 110, 134, 149, 188, 268, 274
BseMII	CTCAG	1 cut(s)	287
BseRI	GAGGAG	2 cut(s)	135, 153
BseXI	GCAGC	3 cut(s)	250, 272, 335
BshFI	GGCC	3 cut(s)	18, 84, 159
BshNI	GGYRCC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	89, 134
BsiWI	CGTACG	1 cut(s)	183
BslI	CCNNNNNNNGG	8 cut(s)	59, 80, 110, 134, 149, 188, 268, 274
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	18, 84, 159
Bsp143I	GATC	2 cut(s)	92, 253
BspANI	GGCC	3 cut(s)	18, 84, 159
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	138
BssECI	CCNNGG	3 cut(s)	13, 134, 196
BssMI	GATC	2 cut(s)	92, 253
BssT1I	CCWWGG	2 cut(s)	13, 196
Bst2UI	CCWGG	3 cut(s)	60, 81, 269
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	273
BstEII	GGTNACC	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	283
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	2 cut(s)	95, 256
BstMBI	GATC	2 cut(s)	92, 253
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 235
BstNI	CCWGG	3 cut(s)	60, 81, 269
BstPI	GGTNACC	1 cut(s)	215
BstSCI	CCNGG	5 cut(s)	58, 79, 88, 133, 267
BstV1I	GCAGC	3 cut(s)	250, 272, 335
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	18, 84, 159
BtrI	CACGTC	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	86
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	3 cut(s)	17, 83, 158
Csp6I	GTAC	3 cut(s)	139, 184, 315
CviQI	GTAC	3 cut(s)	139, 184, 315
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	94, 255
DpnII	GATC	2 cut(s)	92, 253
EciI	GGCGGA	5 cut(s)	27, 111, 156, 168, 213
Eco130I	CCWWGG	2 cut(s)	13, 196
Eco91I	GGTNACC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	215
EcoRII	CCWGG	3 cut(s)	58, 79, 267
EcoT14I	CCWWGG	2 cut(s)	13, 196
ErhI	CCWWGG	2 cut(s)	13, 196
FauI	CCCGC	1 cut(s)	93
Fnu4HI	GCNGC	7 cut(s)	101, 125, 128, 227, 239, 286, 349
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	7 cut(s)	101, 125, 128, 227, 239, 286, 349
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	7 cut(s)	101, 125, 128, 227, 239, 286, 349
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	3 cut(s)	18, 84, 159
HapII	CCGG	2 cut(s)	89, 134
HhaI	GCGC	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HpaII	CCGG	2 cut(s)	89, 134
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188III	TCNNGA	3 cut(s)	23, 275, 298
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 235
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	172
HspAI	GCGC	1 cut(s)	98
KpnI	GGTACC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	92, 253
Lsp1109I	GCAGC	3 cut(s)	250, 272, 335
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	2 cut(s)	215, 245
MalI	GATC	2 cut(s)	94, 255
MboI	GATC	2 cut(s)	92, 253
MspI	CCGG	2 cut(s)	89, 134
MspR9I	CCNGG	5 cut(s)	60, 81, 90, 135, 269
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	3 cut(s)	60, 81, 269
MwoI	GCNNNNNNNGC	2 cut(s)	198, 235
NciI	CCSGG	2 cut(s)	90, 135
NdeII	GATC	2 cut(s)	92, 253
NlaIV	GGNNCC	1 cut(s)	140
PctI	GAATGC	1 cut(s)	350
Pfl23II	CGTACG	1 cut(s)	183
PkrI	GCNGC	7 cut(s)	102, 126, 129, 228, 240, 287, 350
Psp6I	CCWGG	3 cut(s)	58, 79, 267
PspEI	GGTNACC	1 cut(s)	215
PspGI	CCWGG	3 cut(s)	58, 79, 267
PspLI	CGTACG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	3 cut(s)	17, 83, 158
RsaI	GTAC	3 cut(s)	140, 185, 316
RsaNI	GTAC	3 cut(s)	139, 184, 315
SatI	GCNGC	7 cut(s)	101, 125, 128, 227, 239, 286, 349
Sau3AI	GATC	2 cut(s)	92, 253
Sau96I	GGNCC	3 cut(s)	17, 83, 158
ScrFI	CCNGG	5 cut(s)	60, 81, 90, 135, 269
SetI	ASST	2 cut(s)	8, 175
SfaNI	GCATC	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	21, 298
SmoI	CTYRAG	2 cut(s)	21, 298
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	5 cut(s)	58, 79, 88, 133, 267
StyI	CCWWGG	2 cut(s)	13, 196
TaiI	ACGT	1 cut(s)	175
TauI	GCSGC	4 cut(s)	103, 127, 130, 229
TseI	GCWGC	3 cut(s)	238, 285, 348
TspGWI	ACGGA	1 cut(s)	165
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.