Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Reverse (-)

52595907 .. 52597083

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGTTACCACAATGTGGTTCATGTTGGTCACCAATCTCATGATCCCCCATCAGGGTATCCATCGGAATATCCTCCACCGCCTGATTTTCTTCCACCGCAGCAGCCGGGGTTTCCGAACCCTCATGAGTTTCATGGCCCTCCTCCGCCTCAGCCACCGCATCAACACCATCAACGCTATCAGGATTACTTCTATGAAGGCTACCCGCCGCCGCATTCAGCTCAGCCCTACAACCGCCAACATTACCAGAACAACCCATATAACTATGACAGTGGCTGCCCTCCTTTCCTCAATTCCTGTTTGGCCGCACTCTGCTGCTGCTGCCTTTTGGAGCGCTGCTGCTTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

116

Amino Acids

13.41

Weight (kDa)

6.06

Isoelectric Point (pI)

82.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AciI	CCGC	9 cut(s)	80, 98, 146, 158, 206, 209, 212, 235, 306
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	16
AfeI	AGCGCT	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	16, 53, 54
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
AlwI	GGATC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	276
Aor51HI	AGCGCT	1 cut(s)	335
AoxI	GGCC	2 cut(s)	136, 303
ApeKI	GCWGC	8 cut(s)	100, 103, 276, 315, 318, 321, 336, 339
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	8 cut(s)	112, 115, 263, 302, 305, 308, 323, 326
BccI	CCATC	3 cut(s)	58, 70, 177
BciVI	GTATCC	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	69
BlpI	GCTNAGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 53, 54
BseDI	CCNNGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	3 cut(s)	16, 53, 54
BseMII	CTCAG	2 cut(s)	164, 236
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	8 cut(s)	112, 115, 263, 302, 305, 308, 323, 326
BshFI	GGCC	2 cut(s)	138, 305
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	3 cut(s)	16, 53, 54
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	138, 305
Bsp143I	GATC	1 cut(s)	43
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	9 cut(s)	80, 98, 146, 158, 206, 209, 212, 235, 306
BspANI	GGCC	2 cut(s)	138, 305
BspCNI	CTCAG	2 cut(s)	163, 235
BspHI	TCATGA	2 cut(s)	40, 124
BspPI	GGATC	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	150, 222
BstEII	GGTNACC	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstPI	GGTNACC	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	8 cut(s)	112, 115, 263, 302, 305, 308, 323, 326
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	138, 305
BtsIMutI	CAGTG	1 cut(s)	277
CaiI	CAGNNNCTG	1 cut(s)	276
CciI	TCATGA	2 cut(s)	40, 124
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	137
CviAII	CATG	4 cut(s)	23, 41, 125, 134
CviJI	RGCY	8 cut(s)	106, 138, 154, 201, 221, 226, 276, 305
CviKI_1	RGCY	8 cut(s)	106, 138, 154, 201, 221, 226, 276, 305
DdeI	CTNAG	2 cut(s)	150, 222
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DraIII	CACNNNGTG	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	135
Eco47III	AGCGCT	1 cut(s)	335
Eco91I	GGTNACC	1 cut(s)	29
EcoO65I	GGTNACC	1 cut(s)	29
FaeI	CATG	4 cut(s)	26, 44, 128, 137
FaiI	YATR	8 cut(s)	24, 42, 126, 135, 195, 259, 261, 267
FatI	CATG	4 cut(s)	22, 40, 124, 133
FauI	CCCGC	1 cut(s)	213
GlaI	GCGC	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	2 cut(s)	138, 305
HapII	CCGG	1 cut(s)	107
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	4 cut(s)	26, 44, 128, 137
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	67, 117
Hpy188III	TCNNGA	3 cut(s)	41, 125, 182
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	2 cut(s)	150, 222
Hsp92II	CATG	4 cut(s)	26, 44, 128, 137
HspAI	GCGC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	6 cut(s)	39, 96, 120, 167, 260, 310
Lsp1109I	GCAGC	8 cut(s)	112, 115, 263, 302, 305, 308, 323, 326
LweI	GCATC	1 cut(s)	169
MaeIII	GTNAC	2 cut(s)	5, 29
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	83
MluCI	AATT	1 cut(s)	292
MnlI	CCTC	7 cut(s)	84, 132, 150, 153, 159, 291, 299
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	321
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	4 cut(s)	26, 44, 128, 137
NmuCI	GTSAC	1 cut(s)	29
PagI	TCATGA	2 cut(s)	40, 124
PctI	GAATGC	1 cut(s)	214
PflMI	CCANNNNNTGG	1 cut(s)	16
PspEI	GGTNACC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	276
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	1 cut(s)	223
SfaNI	GCATC	1 cut(s)	169
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	9 cut(s)	80, 98, 146, 158, 206, 209, 212, 235, 306
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	272
TasI	AATT	1 cut(s)	292
TauI	GCSGC	3 cut(s)	211, 214, 308
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	8 cut(s)	100, 103, 276, 315, 318, 321, 336, 339
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	3 cut(s)	11, 122, 210
TspRI	CASTG	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.