Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Forward (+)

39544363 .. 39545740

Gene Structure 1378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAGCTACCACCAAGAACCCTACCCTCCTCCGCCGCCGCCGCAAGGCTACCCGTATCCCCAACCAGGCCCGCCGGGGTACCCCTCAGCCCCTCCGTACGACGGGTACCCGCCGCCGCCGCCTCCGGGGTATCCACCTCACGGATACGGCCCTCCACCGCCGCGTCCTCCGCCGTACGAGGGGTACCAAGGGTATTTCAACGGGGGCTACCCTCCGCCTCCGCCGCAATACCAGCAGCAGCACTGTCACCACGATCATCACCATTACCAGGGTCAGGATGACGGCTGCATCTCTTTCTTAAGAGGCTGTTTTGGTGCGCTATTCTGTTGCTGTTTGCTCGAGGAATGCTGCTTCTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

121

Amino Acids

13.46

Weight (kDa)

5.6

Isoelectric Point (pI)

83.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	78, 105, 183
AccB1I	GGYRCC	3 cut(s)	78, 105, 183
AccII	CGCG	1 cut(s)	163
AfaI	GTAC	5 cut(s)	80, 98, 107, 176, 185
AfiI	CCNNNNNNNGG	8 cut(s)	44, 65, 101, 125, 140, 179, 268, 274
AflII	CTTAAG	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	64, 267
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	2 cut(s)	67, 148
ApeKI	GCWGC	4 cut(s)	235, 238, 285, 348
Asp718I	GGTACC	3 cut(s)	78, 105, 183
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	2 cut(s)	68, 149
AsuC2I	CCSGG	2 cut(s)	75, 126
AsuHPI	GGTGA	2 cut(s)	239, 251
AvaI	CYCGRG	1 cut(s)	338
BanI	GGYRCC	3 cut(s)	78, 105, 183
BbvCI	CCTCAGC	1 cut(s)	85
BbvI	GCAGC	4 cut(s)	247, 250, 272, 335
BceAI	ACGGC	3 cut(s)	157, 163, 298
BciT130I	CCWGG	2 cut(s)	66, 269
BciVI	GTATCC	3 cut(s)	66, 137, 141
BcnI	CCSGG	2 cut(s)	75, 126
BfrI	CTTAAG	1 cut(s)	298
BfuI	GTATCC	3 cut(s)	66, 137, 141
Bme1390I	CCNGG	4 cut(s)	66, 75, 126, 269
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	68, 149
BmiI	GGNNCC	3 cut(s)	80, 107, 185
BmrFI	CCNGG	4 cut(s)	66, 75, 126, 269
BmsI	GCATC	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	85
BpuMI	CCSGG	2 cut(s)	75, 126
BsaJI	CCNNGG	4 cut(s)	74, 125, 187, 268
Bsc4I	CCNNNNNNNGG	8 cut(s)	44, 65, 101, 125, 140, 179, 268, 274
BseBI	CCWGG	2 cut(s)	66, 269
BseDI	CCNNGG	4 cut(s)	74, 125, 187, 268
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	8 cut(s)	44, 65, 101, 125, 140, 179, 268, 274
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	4 cut(s)	247, 250, 272, 335
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	2 cut(s)	69, 150
BshNI	GGYRCC	3 cut(s)	78, 105, 183
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	74, 125
BsiWI	CGTACG	2 cut(s)	96, 174
BslI	CCNNNNNNNGG	8 cut(s)	44, 65, 101, 125, 140, 179, 268, 274
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	69, 150
BsoBI	CYCGRG	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	253
BspANI	GGCC	2 cut(s)	69, 150
BspCNI	CTCAG	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	3 cut(s)	80, 107, 185
BspT107I	GGYRCC	3 cut(s)	78, 105, 183
BspTI	CTTAAG	1 cut(s)	298
BssECI	CCNNGG	4 cut(s)	74, 125, 187, 268
BssMI	GATC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	66, 269
Bst4CI	ACNGT	1 cut(s)	245
BstAFI	CTTAAG	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 118, 169, 223, 232
BstNI	CCWGG	2 cut(s)	66, 269
BstSCI	CCNGG	4 cut(s)	64, 73, 124, 267
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	4 cut(s)	247, 250, 272, 335
BsuI	GTATCC	3 cut(s)	66, 137, 141
BsuRI	GGCC	2 cut(s)	69, 150
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	71
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	68, 149
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	5 cut(s)	79, 97, 106, 175, 184
CviJI	RGCY	8 cut(s)	6, 48, 69, 89, 150, 207, 285, 306
CviKI_1	RGCY	8 cut(s)	6, 48, 69, 89, 150, 207, 285, 306
CviQI	GTAC	5 cut(s)	79, 97, 106, 175, 184
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EciI	GGCGGA	4 cut(s)	21, 159, 204, 210
Eco130I	CCWWGG	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	64, 267
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FauI	CCCGC	2 cut(s)	78, 117
FokI	GGATG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	69, 150
HapII	CCGG	2 cut(s)	74, 125
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HpaII	CCGG	2 cut(s)	74, 125
HphI	GGTGA	2 cut(s)	239, 251
Hpy188I	TCNGA	1 cut(s)	362
Hpy188III	TCNNGA	1 cut(s)	275
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 118, 169, 223, 232
HpyF3I	CTNAG	1 cut(s)	85
HspAI	GCGC	1 cut(s)	317
KpnI	GGTACC	3 cut(s)	82, 109, 187
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	8 cut(s)	51, 78, 87, 138, 245, 254, 260, 281
Lsp1109I	GCAGC	4 cut(s)	247, 250, 272, 335
LweI	GCATC	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MseI	TTAA	1 cut(s)	299
MspCI	CTTAAG	1 cut(s)	298
MspI	CCGG	2 cut(s)	74, 125
MspR9I	CCNGG	4 cut(s)	66, 75, 126, 269
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	2 cut(s)	66, 269
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	5 cut(s)	40, 118, 169, 223, 232
NciI	CCSGG	2 cut(s)	75, 126
NdeII	GATC	1 cut(s)	253
NlaIV	GGNNCC	3 cut(s)	80, 107, 185
NmuCI	GTSAC	1 cut(s)	245
PaeR7I	CTCGAG	1 cut(s)	338
PctI	GAATGC	1 cut(s)	350
Pfl23II	CGTACG	2 cut(s)	96, 174
Psp6I	CCWGG	2 cut(s)	64, 267
PspGI	CCWGG	2 cut(s)	64, 267
PspLI	CGTACG	2 cut(s)	96, 174
PspN4I	GGNNCC	3 cut(s)	80, 107, 185
PspPI	GGNCC	2 cut(s)	68, 149
PspXI	VCTCGAGB	1 cut(s)	338
RsaI	GTAC	5 cut(s)	80, 98, 107, 176, 185
RsaNI	GTAC	5 cut(s)	79, 97, 106, 175, 184
SaqAI	TTAA	1 cut(s)	299
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	68, 149
ScrFI	CCNGG	4 cut(s)	66, 75, 126, 269
SetI	ASST	2 cut(s)	8, 139
SfaNI	GCATC	1 cut(s)	297
Sfr274I	CTCGAG	1 cut(s)	338
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	298, 338
SmoI	CTYRAG	2 cut(s)	298, 338
StyD4I	CCNGG	4 cut(s)	64, 73, 124, 267
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	339
TauI	GCSGC	8 cut(s)	37, 40, 43, 115, 118, 121, 163, 226
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	4 cut(s)	235, 238, 285, 348
Tsp45I	GTSAC	1 cut(s)	245
TspGWI	ACGGA	2 cut(s)	84, 156
TspRI	CASTG	1 cut(s)	248
Vha464I	CTTAAG	1 cut(s)	298
XhoI	CTCGAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.