Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Reverse (-)

578940 .. 580875

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1009100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGTTACCAGAAAGCTCCCCAAGAACCCTACCCTCCTCCAGGATATCAGTATCCGCCGCCGGGCTACCCATCAGCTCCGCCGCCACCGCTGCCATATGAAGGGTACCCACCGCCGCCGCCTCCACCGTACGAAGGCTATCCACCACCACCACCTGGGTATCCTCACGGATACGGTCCGCCTCCGCCGCCGCGTGATCCACCGTACGAGGGGTACCAAGGTTATTTCAATCAGGGGTACCCTCCGCCACCTCCTCCGCAGCAGCAGCAATACGAGCACTATCACTGCGAGCATAACAATTACCAAGAGCAAGATGGTTGTATGTCTTTCTTACGAGGCTGTTTGGCTGCGCTATGCTGCTGCTGTTTGCTGGAGGAGTGCTGCTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

131

Amino Acids

14.66

Weight (kDa)

4.61

Isoelectric Point (pI)

89.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	105, 213, 237
AccB1I	GGYRCC	3 cut(s)	105, 213, 237
AccB7I	CCANNNNNTGG	1 cut(s)	155
AccII	CGCG	1 cut(s)	193
AclWI	GGATC	1 cut(s)	191
AfaI	GTAC	5 cut(s)	107, 131, 206, 215, 239
AfiI	CCNNNNNNNGG	6 cut(s)	41, 62, 101, 134, 155, 209
AgsI	TTSAA	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	40, 154
AluBI	AGCT	2 cut(s)	17, 77
AluI	AGCT	2 cut(s)	17, 77
Alw21I	GWGCWC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	191
ApeKI	GCWGC	8 cut(s)	91, 259, 262, 265, 347, 357, 360, 381
Asp718I	GGTACC	3 cut(s)	105, 213, 237
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	176
BaeI	ACNNNNGTAYC	4 cut(s)	143, 176, 205, 238
BanI	GGYRCC	3 cut(s)	105, 213, 237
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	8 cut(s)	78, 271, 274, 277, 334, 344, 347, 368
BccI	CCATC	2 cut(s)	79, 308
BciT130I	CCWGG	2 cut(s)	42, 156
BciVI	GTATCC	3 cut(s)	63, 164, 171
BcnI	CCSGG	1 cut(s)	63
BfuI	GTATCC	3 cut(s)	63, 164, 171
Bme1390I	CCNGG	3 cut(s)	42, 63, 156
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	3 cut(s)	107, 215, 239
BmrFI	CCNGG	3 cut(s)	42, 63, 156
BpmI	CTGGAG	2 cut(s)	24, 392
BpuMI	CCSGG	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	155, 217
Bsc4I	CCNNNNNNNGG	6 cut(s)	41, 62, 101, 134, 155, 209
BseBI	CCWGG	2 cut(s)	42, 156
BseDI	CCNNGG	2 cut(s)	155, 217
BseLI	CCNNNNNNNGG	6 cut(s)	41, 62, 101, 134, 155, 209
BseRI	GAGGAG	3 cut(s)	27, 243, 389
BseXI	GCAGC	8 cut(s)	78, 271, 274, 277, 334, 344, 347, 368
Bsh1236I	CGCG	1 cut(s)	193
BshNI	GGYRCC	3 cut(s)	105, 213, 237
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	62
BsiWI	CGTACG	2 cut(s)	129, 204
BslI	CCNNNNNNNGG	6 cut(s)	41, 62, 101, 134, 155, 209
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	107, 215, 239
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	3 cut(s)	105, 213, 237
BssECI	CCNNGG	2 cut(s)	155, 217
BssMI	GATC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	2 cut(s)	42, 156
Bst4CI	ACNGT	3 cut(s)	129, 176, 204
BstC8I	GCNNGC	1 cut(s)	290
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 91, 187, 265, 274
BstNI	CCWGG	2 cut(s)	42, 156
BstSCI	CCNGG	3 cut(s)	40, 61, 154
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	8 cut(s)	78, 271, 274, 277, 334, 344, 347, 368
BsuI	GTATCC	3 cut(s)	63, 164, 171
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	176
CpoI	CGGWCCG	1 cut(s)	176
Csp6I	GTAC	5 cut(s)	106, 130, 205, 214, 238
CspI	CGGWCCG	1 cut(s)	176
CviJI	RGCY	6 cut(s)	17, 66, 77, 138, 339, 347
CviKI_1	RGCY	6 cut(s)	17, 66, 77, 138, 339, 347
CviQI	GTAC	5 cut(s)	106, 130, 205, 214, 238
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EciI	GGCGGA	5 cut(s)	45, 69, 168, 174, 234
Eco130I	CCWWGG	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	40, 154
EcoRV	GATATC	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaiI	YATR	5 cut(s)	97, 99, 294, 323, 355
FauNDI	CATATG	1 cut(s)	97
GlaI	GCGC	1 cut(s)	351
GsuI	CTGGAG	2 cut(s)	24, 392
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HpaII	CCGG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	95, 128
HpyCH4III	ACNGT	3 cut(s)	129, 176, 204
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 91, 187, 265, 274
HspAI	GCGC	1 cut(s)	350
KpnI	GGTACC	3 cut(s)	109, 217, 241
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	2 cut(s)	22, 82
LpnPI	CCDG	8 cut(s)	23, 27, 54, 75, 141, 168, 218, 356
Lsp1109I	GCAGC	8 cut(s)	78, 271, 274, 277, 334, 344, 347, 368
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	1 cut(s)	298
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	3 cut(s)	42, 63, 156
MvaI	CCWGG	2 cut(s)	42, 156
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	5 cut(s)	88, 91, 187, 265, 274
NciI	CCSGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	1 cut(s)	196
NlaIV	GGNNCC	3 cut(s)	107, 215, 239
Pfl23II	CGTACG	2 cut(s)	129, 204
PflMI	CCANNNNNTGG	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	40, 154
PspGI	CCWGG	2 cut(s)	40, 154
PspLI	CGTACG	2 cut(s)	129, 204
PspN4I	GGNNCC	3 cut(s)	107, 215, 239
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	5 cut(s)	107, 131, 206, 215, 239
RsaNI	GTAC	5 cut(s)	106, 130, 205, 214, 238
Rsr2I	CGGWCCG	1 cut(s)	176
RsrII	CGGWCCG	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	3 cut(s)	42, 63, 156
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	5 cut(s)	19, 79, 157, 223, 253
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	298
StyD4I	CCNGG	3 cut(s)	40, 61, 154
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	3 cut(s)	129, 176, 204
TasI	AATT	1 cut(s)	298
TauI	GCSGC	6 cut(s)	61, 85, 118, 121, 190, 193
TscAI	CASTG	1 cut(s)	290
TseI	GCWGC	8 cut(s)	91, 259, 262, 265, 347, 357, 360, 381
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	290
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	176
XagI	CCTNNNNNAGG	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.