Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009085

Physical Location & Seq

Genomic Coordinates Forward (+)

7442950 .. 7444074

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGTTACAACGTTGTCCATGTTCAACATGAGCAGCATCATCTTCCACCAGGGTATCCGCAAGAGTATCCTCCGCCGCCTAATGACTTTCCACCTCCTCCGCCACGGCCGGGATTCCCAGATCCCTATCCTTCTGCTCCGGGACCTTTTCCGCCACCCCATCATCAGGAACATGGATATCAGGGTTACTTCTATGAGGGCTACCAACCGCCACTTTCGGCTGCCCCGCCGCCTCTCCGCCCGTACCATCGCTACCACGAATACGACGGCTGCTCTTCCCTCCTTAATGGCCTTTGCGCTGCACTTTGTTGCTGCTGCCTGTTGGAGAACTGCTGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

114

Amino Acids

12.7

Weight (kDa)

5.74

Isoelectric Point (pI)

69.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33520
fragaria_vesca	FvH4_4g23030 FvH4_6g54130
malus_domestica	MD09G1005100.v1.1 MD17G1009100.v1.1
prunus_persica	Prupe.1G218800_v2.0.a1 Prupe.3G311700_v2.0.a1
pyrus_communis	pycom16g10790
rosa_laevigata	RLG00000007083 RLG00000022401
rosa_multiflora	Rmu_sc0000054.1_g000006 Rmu_sc0000405.1_g000026
rosa_roxburghii	Rroxscaffold_2G00076590 Rroxscaffold_5G00370910
rosa_rugosa	Rorug02G0593100 Rorug04G0235000
rosa_samantha	Rh2AG671400 Rh2BG682900 Rh2CG645500 Rh2DG696300 Rh4AG290600 Rh4DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	59, 74, 77, 101, 152, 209, 227, 230, 238
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	107
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	110, 166
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	49
AlwI	GGATC	1 cut(s)	116
AoxI	GGCC	2 cut(s)	107, 289
ApeKI	GCWGC	7 cut(s)	34, 221, 270, 299, 312, 315, 333
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	2 cut(s)	111, 141
AvaII	GGWCC	1 cut(s)	143
BaeI	ACNNNNGTAYC	2 cut(s)	38, 71
BbvI	GCAGC	7 cut(s)	46, 208, 257, 286, 299, 302, 320
BccI	CCATC	2 cut(s)	168, 255
BceAI	ACGGC	2 cut(s)	122, 283
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	2 cut(s)	66, 78
BcnI	CCSGG	2 cut(s)	111, 141
BfuI	GTATCC	2 cut(s)	66, 78
BisI	GCNGC	9 cut(s)	35, 77, 222, 230, 271, 300, 313, 316, 334
BlsI	GCNGC	9 cut(s)	36, 78, 223, 231, 272, 301, 314, 317, 335
Bme1390I	CCNGG	3 cut(s)	51, 111, 141
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	3 cut(s)	51, 111, 141
BmsI	GCATC	1 cut(s)	46
BpuMI	CCSGG	2 cut(s)	111, 141
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	50, 104
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 166
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	50, 104
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	110, 166
BseRI	GAGGAG	1 cut(s)	87
BseX3I	CGGCCG	1 cut(s)	107
BseXI	GCAGC	7 cut(s)	46, 208, 257, 286, 299, 302, 320
BsgI	GTGCAG	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	109, 291
BsiEI	CGRYCG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	110, 140
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	110, 166
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	2 cut(s)	109, 291
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	9 cut(s)	59, 74, 77, 101, 152, 209, 227, 230, 238
BspANI	GGCC	2 cut(s)	109, 291
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	50, 104
BssMI	GATC	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	280
BstDSI	CCRYGG	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMCI	CGRYCG	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	49, 109, 139
BstV1I	GCAGC	7 cut(s)	46, 208, 257, 286, 299, 302, 320
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BstZI	CGGCCG	1 cut(s)	107
BsuI	GTATCC	2 cut(s)	66, 78
BsuRI	GGCC	2 cut(s)	109, 291
BtgI	CCRYGG	1 cut(s)	104
BtgZI	GCGATG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	3 cut(s)	20, 29, 173
CviJI	RGCY	5 cut(s)	109, 201, 221, 270, 291
CviKI_1	RGCY	5 cut(s)	109, 201, 221, 270, 291
CviQI	GTAC	1 cut(s)	244
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	107
EagI	CGGCCG	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
EciI	GGCGGA	4 cut(s)	63, 90, 141, 227
EclXI	CGGCCG	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	143
Eco52I	CGGCCG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	179
FaeI	CATG	3 cut(s)	23, 32, 176
FaiI	YATR	5 cut(s)	21, 30, 174, 195, 340
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	3 cut(s)	19, 28, 172
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	9 cut(s)	35, 77, 222, 230, 271, 300, 313, 316, 334
Fsp4HI	GCNGC	9 cut(s)	35, 77, 222, 230, 271, 300, 313, 316, 334
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	9 cut(s)	35, 77, 222, 230, 271, 300, 313, 316, 334
HaeIII	GGCC	2 cut(s)	109, 291
HapII	CCGG	2 cut(s)	110, 140
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	23, 32, 176
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	2 cut(s)	110, 140
Hpy188III	TCNNGA	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	23, 32, 176
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	8 cut(s)	36, 63, 123, 132, 152, 153, 167, 332
Lsp1109I	GCAGC	7 cut(s)	46, 208, 257, 286, 299, 302, 320
LweI	GCATC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	5, 185
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	35, 267
MflI	RGATCY	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	6 cut(s)	81, 105, 108, 190, 243, 290
MseI	TTAA	1 cut(s)	285
MspI	CCGG	2 cut(s)	110, 140
MspR9I	CCNGG	3 cut(s)	51, 111, 141
MvaI	CCWGG	1 cut(s)	51
NciI	CCSGG	2 cut(s)	111, 141
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	3 cut(s)	23, 32, 176
NlaIV	GGNNCC	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	114
PfoI	TCCNGGA	1 cut(s)	139
PkrI	GCNGC	9 cut(s)	36, 78, 223, 231, 272, 301, 314, 317, 335
PpuMI	RGGWCCY	1 cut(s)	143
Psp1406I	AACGTT	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	143
PspPPI	RGGWCCY	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	9 cut(s)	35, 77, 222, 230, 271, 300, 313, 316, 334
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	3 cut(s)	51, 111, 141
SetI	ASST	3 cut(s)	15, 97, 148
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	143
SsiI	CCGC	9 cut(s)	59, 74, 77, 101, 152, 209, 227, 230, 238
StyD4I	CCNGG	3 cut(s)	49, 109, 139
TaiI	ACGT	1 cut(s)	15
TauI	GCSGC	2 cut(s)	79, 232
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseI	GCWGC	7 cut(s)	34, 221, 270, 299, 312, 315, 333
VpaK11BI	GGWCC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.