FvH4_4g34270

Glycosyl hydrolases family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009684
Physical Location & Seq
Reverse (-)
32147069 .. 32148133
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34270.t1

Sequence Viewer

Length: 1008 bp
ATGCACAGTAATAAAATGCTAAAGAATTTTGATCATCATGACCATCATTACATCCTCCTCTCTCATCTCTCACTCTTCTTCCTTAATCTTCTCCCAATCTCATCCGCAACGCCGCGGCCAATAGGAATCTGCTACGGCCGAGTAGCCAACAACCTCCCTCCGCCCACTGCCGCAGTCGGCATCCTCAAATCCAACAACATAACAAACGTCCGTCTCTTCAATACCGACCCCGCCACTCTCAGCTCCTTCTCCAACACCGGTATAACCGTCATGATCGGCGTCCCTAACGAAATCCTCCCCACACTCACCACCGCCTCCGCCGCCACCGAGTGGCTCCAATCCTACATCTTTGCCATTGTTCCGCCTAACCAAGTCCGCTACATCGCCGTAGGCAACGAGGTCTTCCTCAAAGATCCCTGCTACACTCCCCACGTGGTTCCCGCCATCCTCAGCCTCCACCAAGCCCTTCAAACCCTAAATCTCGCCGATACAATCAAACTCTCGTCGCCGCAAGCCGCCACCGTGCTTTCAATCTCCTACCCTCCTTCCTCGGCCTCGTTTGATCCGGACCTCAAATCATTTCTACTTCCACTTTTTCGTTTCTTGCACGACACGGCATCTCCCTTCATGGTGAATTTGTATCCCTATTTTAGCTACTTGAACAACCGCCCCTACGTCTCCGTAGACTACGCTTTGTTTCGGGATCCGAATTACGTCCACGACGGCGCGTTGGTGTACGAAAATCTGTTTGACGCGAGTGTGGACGCGTTTGTGAGCGCGTTGGAGAGGGAGGGGTTTGGGGATGTTGAGGTGGTGGTTTCGGAGACCGGAGAGGTGGTGAGAAGGTCGGTGGAGGGGGTCGGGACGCCGAAGAAGGCGGGGGCGGGAGTGGAGGTTTACTTGTTTGATTTGTTTGATGAGAATGAAAAAGGCGGGGAGGAGTATGAGCGGCATTTTGGGATTTTTGGGCCTGATGGGCTTAAGGCATATGACCTTAGTTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

336

Amino Acids

37.0

Weight (kDa)

5.2

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 41 - 334 6.8e-67 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 330
AccBSI CCGCTC 1 cut(s) 949
AccI GTMKAC 1 cut(s) 684
AccII CGCG 5 cut(s) 115, 728, 755, 767, 779
AccIII TCCGGA 1 cut(s) 565
AclWI GGATC 4 cut(s) 407, 557, 698, 711
AcoI YGGCCR 2 cut(s) 116, 136
AcsI RAATTY 2 cut(s) 25, 634
AcvI CACGTG 1 cut(s) 433
AcyI GRCGYC 2 cut(s) 279, 866
AdeI CACNNNGTG 1 cut(s) 330
AfaI GTAC 1 cut(s) 737
AfiI CCNNNNNNNGG 1 cut(s) 330
AflII CTTAAG 1 cut(s) 980
AflIII ACRYGT 1 cut(s) 765
AgeI ACCGGT 1 cut(s) 257
AgsI TTSAA 5 cut(s) 220, 470, 531, 661, 1003
AluBI AGCT 2 cut(s) 243, 654
AluI AGCT 2 cut(s) 243, 654
Alw26I GTCTC 3 cut(s) 218, 682, 818
AlwI GGATC 4 cut(s) 407, 557, 698, 711
Aor13HI TCCGGA 1 cut(s) 565
AoxI GGCC 4 cut(s) 116, 136, 552, 968
ApoI RAATTY 2 cut(s) 25, 634
AsiGI ACCGGT 1 cut(s) 257
AspLEI GCGC 2 cut(s) 728, 779
AspS9I GGNCC 2 cut(s) 568, 968
AsuHPI GGTGA 3 cut(s) 298, 643, 850
AvaII GGWCC 1 cut(s) 568
BamHI GGATCC 1 cut(s) 703
BbrPI CACGTG 1 cut(s) 433
BbsI GAAGAC 1 cut(s) 394
BbvCI CCTCAGC 1 cut(s) 449
BccI CCATC 3 cut(s) 51, 452, 968
BceAI ACGGC 4 cut(s) 151, 371, 630, 739
BciVI GTATCC 1 cut(s) 651
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 3 cut(s) 218, 682, 818
BfrI CTTAAG 1 cut(s) 980
BfuI GTATCC 1 cut(s) 651
BglI GCCNNNNNGGC 1 cut(s) 976
BisI GCNGC 7 cut(s) 113, 116, 171, 321, 509, 516, 950
BlsI GCNGC 7 cut(s) 114, 117, 172, 322, 510, 517, 951
Bme18I GGWCC 1 cut(s) 568
BmgT120I GGNCC 2 cut(s) 568, 968
BmiI GGNNCC 3 cut(s) 335, 438, 705
BmsI GCATC 2 cut(s) 189, 626
BpiI GAAGAC 1 cut(s) 394
Bpu10I CCTNAGC 1 cut(s) 449
BsaAI YACGTR 1 cut(s) 433
BsaHI GRCGYC 2 cut(s) 279, 866
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 2 cut(s) 113, 549
BsaWI WCCGGW 3 cut(s) 257, 565, 827
BsaXI ACNNNNNCTCC 6 cut(s) 604, 634, 822, 852, 879, 909
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse118I RCCGGY 1 cut(s) 257
BseAI TCCGGA 1 cut(s) 565
BseDI CCNNGG 2 cut(s) 113, 549
BseGI GGATG 5 cut(s) 51, 101, 180, 444, 808
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMII CTCAG 2 cut(s) 253, 463
BseRI GAGGAG 2 cut(s) 47, 953
BseX3I CGGCCG 1 cut(s) 136
Bsh1236I CGCG 5 cut(s) 115, 728, 755, 767, 779
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 4 cut(s) 118, 138, 554, 970
BshTI ACCGGT 1 cut(s) 257
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 3 cut(s) 258, 566, 828
BslFI GGGAC 2 cut(s) 266, 877
BslI CCNNNNNNNGG 1 cut(s) 330
BsmAI GTCTC 3 cut(s) 218, 682, 818
BsmBI CGTCTC 2 cut(s) 218, 682
BsmFI GGGAC 2 cut(s) 266, 877
BsnI GGCC 4 cut(s) 118, 138, 554, 970
Bso31I GGTCTC 1 cut(s) 818
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 5 cut(s) 31, 273, 412, 562, 703
BspANI GGCC 4 cut(s) 118, 138, 554, 970
BspCNI CTCAG 2 cut(s) 252, 462
BspEI TCCGGA 1 cut(s) 565
BspFNI CGCG 5 cut(s) 115, 728, 755, 767, 779
BspHI TCATGA 2 cut(s) 37, 270
BspLI GGNNCC 3 cut(s) 335, 438, 705
BspPI GGATC 4 cut(s) 407, 557, 698, 711
BspTI CTTAAG 1 cut(s) 980
BspTNI GGTCTC 1 cut(s) 818
BsrBI CCGCTC 1 cut(s) 949
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 113, 549
BssMI GATC 5 cut(s) 31, 273, 412, 562, 703
BssNI GRCGYC 2 cut(s) 279, 866
Bst4CI ACNGT 3 cut(s) 8, 268, 523
Bst6I CTCTTC 2 cut(s) 80, 221
BstACI GRCGYC 2 cut(s) 279, 866
BstAFI CTTAAG 1 cut(s) 980
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 3 cut(s) 239, 449, 995
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 5 cut(s) 51, 101, 180, 444, 808
BstFNI CGCG 5 cut(s) 115, 728, 755, 767, 779
BstHHI GCGC 2 cut(s) 728, 779
BstKTI GATC 5 cut(s) 34, 276, 415, 565, 706
BstMAI GTCTC 3 cut(s) 218, 682, 818
BstMBI GATC 5 cut(s) 31, 273, 412, 562, 703
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 320, 976
BstUI CGCG 5 cut(s) 115, 728, 755, 767, 779
BstV2I GAAGAC 1 cut(s) 394
BstX2I RGATCY 2 cut(s) 412, 703
BstYI RGATCY 2 cut(s) 412, 703
BstZI CGGCCG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 651
BsuRI GGCC 4 cut(s) 118, 138, 554, 970
BtgI CCRYGG 1 cut(s) 113
BtgZI GCGATG 1 cut(s) 367
BtsCI GGATG 5 cut(s) 51, 101, 180, 444, 808
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 513
CciI TCATGA 2 cut(s) 37, 270
CfoI GCGC 2 cut(s) 728, 779
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 568, 968
Cfr42I CCGCGG 1 cut(s) 116
CseI GACGC 4 cut(s) 268, 761, 773, 874
Csp6I GTAC 1 cut(s) 736
CspAI ACCGGT 1 cut(s) 257
CviAII CATG 3 cut(s) 38, 271, 628
CviQI GTAC 1 cut(s) 736
DdeI CTNAG 3 cut(s) 239, 449, 995
DpnI GATC 5 cut(s) 33, 275, 414, 564, 705
DpnII GATC 5 cut(s) 31, 273, 412, 562, 703
DraIII CACNNNGTG 1 cut(s) 330
EaeI YGGCCR 2 cut(s) 116, 136
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 80, 221
EarI CTCTTC 2 cut(s) 80, 221
EciI GGCGGA 3 cut(s) 150, 307, 351
EclXI CGGCCG 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 818
Eco47I GGWCC 1 cut(s) 568
Eco52I CGGCCG 1 cut(s) 136
Eco72I CACGTG 1 cut(s) 433
Esp3I CGTCTC 2 cut(s) 218, 682
FaeI CATG 3 cut(s) 41, 274, 631
FaiI YATR 8 cut(s) 39, 200, 263, 272, 629, 945, 988, 990
FaqI GGGAC 2 cut(s) 266, 877
FatI CATG 3 cut(s) 37, 270, 627
FauI CCCGC 5 cut(s) 238, 448, 871, 877, 926
FauNDI CATATG 1 cut(s) 988
FbaI TGATCA 1 cut(s) 31
FblI GTMKAC 1 cut(s) 684
Fnu4HI GCNGC 7 cut(s) 113, 116, 171, 321, 509, 516, 950
FokI GGATG 5 cut(s) 38, 88, 167, 431, 815
Fsp4HI GCNGC 7 cut(s) 113, 116, 171, 321, 509, 516, 950
GlaI GCGC 2 cut(s) 727, 778
GluI GCNGC 7 cut(s) 113, 116, 171, 321, 509, 516, 950
HaeIII GGCC 4 cut(s) 118, 138, 554, 970
HapII CCGG 3 cut(s) 258, 566, 828
HgaI GACGC 4 cut(s) 268, 761, 773, 874
HhaI GCGC 2 cut(s) 728, 779
Hin1I GRCGYC 2 cut(s) 279, 866
Hin1II CATG 3 cut(s) 41, 274, 631
Hin6I GCGC 2 cut(s) 726, 777
HinP1I GCGC 2 cut(s) 726, 777
HinfI GANTC 1 cut(s) 126
HpaII CCGG 3 cut(s) 258, 566, 828
HphI GGTGA 3 cut(s) 298, 643, 850
Hpy166II GTNNAC 5 cut(s) 685, 718, 736, 763, 898
Hpy188I TCNGA 2 cut(s) 708, 823
Hpy188III TCNNGA 5 cut(s) 38, 271, 566, 701, 862
Hpy8I GTNNAC 5 cut(s) 685, 718, 736, 763, 898
Hpy99I CGWCG 2 cut(s) 508, 725
HpyAV CCTTC 6 cut(s) 256, 476, 555, 634, 837, 868
HpyCH4III ACNGT 3 cut(s) 8, 268, 523
HpyCH4IV ACGT 4 cut(s) 207, 432, 675, 714
HpyCH4V TGCA 2 cut(s) 4, 607
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 976
HpyF3I CTNAG 3 cut(s) 239, 449, 995
HpySE526I ACGT 4 cut(s) 207, 432, 675, 714
Hsp92I GRCGYC 2 cut(s) 279, 866
Hsp92II CATG 3 cut(s) 41, 274, 631
HspAI GCGC 2 cut(s) 726, 777
Kpn2I TCCGGA 1 cut(s) 565
Ksp22I TGATCA 1 cut(s) 31
KspI CCGCGG 1 cut(s) 116
Kzo9I GATC 5 cut(s) 31, 273, 412, 562, 703
LmnI GCTCC 2 cut(s) 248, 339
LpnPI CCDG 5 cut(s) 271, 430, 579, 841, 984
LweI GCATC 2 cut(s) 189, 626
MaeII ACGT 4 cut(s) 207, 432, 675, 714
MalI GATC 5 cut(s) 33, 275, 414, 564, 705
MbiI CCGCTC 1 cut(s) 949
MboI GATC 5 cut(s) 31, 273, 412, 562, 703
MboII GAAGA 6 cut(s) 67, 70, 80, 208, 394, 883
MflI RGATCY 2 cut(s) 412, 703
MluCI AATT 3 cut(s) 25, 634, 709
MluI ACGCGT 1 cut(s) 765
MmeI TCCRAC 3 cut(s) 216, 276, 762
MroI TCCGGA 1 cut(s) 565
MseI TTAA 2 cut(s) 84, 981
MspA1I CMGCKG 1 cut(s) 115
MspCI CTTAAG 1 cut(s) 980
MspI CCGG 3 cut(s) 258, 566, 828
MvnI CGCG 5 cut(s) 115, 728, 755, 767, 779
MwoI GCNNNNNNNGC 2 cut(s) 320, 976
NdeI CATATG 1 cut(s) 988
NdeII GATC 5 cut(s) 31, 273, 412, 562, 703
NlaIII CATG 3 cut(s) 41, 274, 631
NlaIV GGNNCC 3 cut(s) 335, 438, 705
NmeAIII GCCGAG 2 cut(s) 164, 530
PagI TCATGA 2 cut(s) 37, 270
PfeI GAWTC 1 cut(s) 126
PflMI CCANNNNNTGG 1 cut(s) 330
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 7 cut(s) 114, 117, 172, 322, 510, 517, 951
PmaCI CACGTG 1 cut(s) 433
PmlI CACGTG 1 cut(s) 433
Ppu21I YACGTR 1 cut(s) 433
PspCI CACGTG 1 cut(s) 433
PspN4I GGNNCC 3 cut(s) 335, 438, 705
PspPI GGNCC 2 cut(s) 568, 968
PsuI RGATCY 2 cut(s) 412, 703
RsaI GTAC 1 cut(s) 737
RsaNI GTAC 1 cut(s) 736
SacII CCGCGG 1 cut(s) 116
SaqAI TTAA 2 cut(s) 84, 981
SatI GCNGC 7 cut(s) 113, 116, 171, 321, 509, 516, 950
Sau3AI GATC 5 cut(s) 31, 273, 412, 562, 703
Sau96I GGNCC 2 cut(s) 568, 968
SfaNI GCATC 2 cut(s) 189, 626
Sfr303I CCGCGG 1 cut(s) 116
SgrBI CCGCGG 1 cut(s) 116
SinI GGWCC 1 cut(s) 568
SmlI CTYRAG 1 cut(s) 980
SmoI CTYRAG 1 cut(s) 980
Sse9I AATT 3 cut(s) 25, 634, 709
TaaI ACNGT 3 cut(s) 8, 268, 523
TaiI ACGT 4 cut(s) 210, 435, 678, 717
TasI AATT 3 cut(s) 25, 634, 709
TauI GCSGC 7 cut(s) 115, 118, 173, 323, 511, 518, 952
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 2 cut(s) 84, 981
Tru9I TTAA 2 cut(s) 84, 981
TscAI CASTG 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 616, 939
TspGWI ACGGA 2 cut(s) 200, 670
TspRI CASTG 1 cut(s) 172
Van91I CCANNNNNTGG 1 cut(s) 330
Vha464I CTTAAG 1 cut(s) 980
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 2 cut(s) 25, 634
XmiI GTMKAC 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.