Rh4CG432000

Glycosyl hydrolases family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0009684
Physical Location & Seq
Reverse (-)
67207254 .. 67208659
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG432000.1

Sequence Viewer

Length: 1062 bp
ATGCAAATTAAAATGCCAAAGAACTTTGATCATCACTATGACCACCTCCTCATCCTCTCTCAATTCTCACTCCTCTTGCTCAATCTTCTCTCACCCTCGTCCGCAGCGCCGCCGCCAATCGGAATCTGCTACGGCCGAGTAGCCAACAACCTCCCTCCGCCCACAGTCGCCGTCGACATCCTCAAAGCCAACAACATAAAAAACGTCCGCCTCTTCAATGCCAACCCCGCCACTCTCAGCTCCTTCTCCAACTCCGGAATCAGCGTCATGATTGGGGTCCCCAACGAAATCCTCCCCACCCTCACCACCTCCTCCGCCGCAGTGGGGTGGCTCCAATCCGACATCTTCTCCAGCATTCCGGCCAACCAAGTCCGCTACATCGCCGTCGGCAACGAGGTCTTCCTCAAAGACCCCTTCTACACTCCCCACGTGGTTCCCGCCATCCTCAGCCTCCACCAAGCCCTCCAAACCCTAAATCTCTCGCATTCAATAAAGCTCTCATCGCCGCAAGCCGCCTCCGTGCTATCAATCTCCTACCCTCCTTCCTCGGCCTCGTTCGCTCCCGACCTCAAACCAGTTCTATTTCTTCTTCTTCAATTCTTGCGTGACACGGCATCTCCCTTCATGGTGAATTTGTATCCCTATTTCAGCTACTTAAACAACCGGCCCTATGTCTCTGTTGACTATGCTTTGTTTCGGGATCCGAACCCCGTGCAAGACGGCGCGTTGGTGTACGACAACCTGTTCGACGCGAGTGTGGACGCGTTTGTGAGCGCTTTGGAGAGGGAGGGGTTTGGGGGAGTTGAGGTGGTGGTTTCGGAGACCGGGTGGCCGACGAGCGGTGGGGAAGCGGCGAGTGTGGAGAACGCGCTGGCTTATAATAGAGAGGTGGTGAGGCGAGCGGCGGAGGGGGTTGGGACGCCGAAGAAGGCGGGGGAGGGAGTGGAGGTGTACTTGTTTGATCTGTTTGATGAGAATGAAAAAGGCGGGGAGGAGTATGAGCGGCATTTTGGGATTTTTGGGCCTGATGGGCTTAAGGCATATGACCTTGGTTTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

353

Amino Acids

38.4

Weight (kDa)

4.98

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 40 - 352 6.8e-82 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
AccBSI CCGCTC 3 cut(s) 840, 902, 1003
AccI GTMKAC 1 cut(s) 174
AccII CGCG 4 cut(s) 725, 752, 764, 869
AccIII TCCGGA 1 cut(s) 254
AclWI GGATC 2 cut(s) 695, 708
AcoI YGGCCR 3 cut(s) 133, 360, 830
AcsI RAATTY 1 cut(s) 631
AcvI CACGTG 1 cut(s) 430
AcyI GRCGYC 1 cut(s) 920
AfaI GTAC 2 cut(s) 734, 953
AfeI AGCGCT 1 cut(s) 775
AfiI CCNNNNNNNGG 3 cut(s) 119, 324, 839
AflII CTTAAG 1 cut(s) 1034
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 4 cut(s) 217, 489, 596, 1057
AluBI AGCT 3 cut(s) 240, 496, 651
AluI AGCT 3 cut(s) 240, 496, 651
Alw26I GTCTC 2 cut(s) 679, 815
AlwI GGATC 2 cut(s) 695, 708
Aor13HI TCCGGA 1 cut(s) 254
Aor51HI AGCGCT 1 cut(s) 775
AoxI GGCC 6 cut(s) 133, 360, 549, 665, 830, 1022
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 631
ArsI GACNNNNNNTTYG 2 cut(s) 728, 760
AspLEI GCGC 4 cut(s) 109, 725, 776, 871
AspS9I GGNCC 3 cut(s) 277, 666, 1022
AsuC2I CCSGG 1 cut(s) 826
AsuHPI GGTGA 4 cut(s) 84, 295, 640, 904
AvaII GGWCC 1 cut(s) 277
BamHI GGATCC 1 cut(s) 700
BbrPI CACGTG 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 391
BbvCI CCTCAGC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 116
BccI CCATC 2 cut(s) 449, 1022
BceAI ACGGC 5 cut(s) 148, 155, 368, 627, 736
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciVI GTATCC 1 cut(s) 648
BclI TGATCA 1 cut(s) 28
BcnI CCSGG 1 cut(s) 826
BcoDI GTCTC 2 cut(s) 679, 815
BfoI RGCGCY 2 cut(s) 110, 777
BfrI CTTAAG 1 cut(s) 1034
BfuI GTATCC 1 cut(s) 648
BglI GCCNNNNNGGC 1 cut(s) 1030
BisI GCNGC 9 cut(s) 105, 110, 113, 318, 506, 513, 852, 903, 1004
BlsI GCNGC 9 cut(s) 106, 111, 114, 319, 507, 514, 853, 904, 1005
Bme1390I CCNGG 1 cut(s) 826
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 277, 666, 1022
BmiI GGNNCC 5 cut(s) 278, 279, 332, 435, 702
BmrFI CCNGG 1 cut(s) 826
BmsI GCATC 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 391
BpmI CTGGAG 1 cut(s) 334
Bpu10I CCTNAGC 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 826
BsaAI YACGTR 1 cut(s) 430
BsaHI GRCGYC 1 cut(s) 920
BsaI GGTCTC 1 cut(s) 815
BsaJI CCNNGG 2 cut(s) 546, 1048
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 324, 839
Bse118I RCCGGY 1 cut(s) 663
Bse1I ACTGG 1 cut(s) 575
BseAI TCCGGA 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 546, 1048
BseGI GGATG 3 cut(s) 51, 177, 441
BseLI CCNNNNNNNGG 3 cut(s) 119, 324, 839
BseMII CTCAG 2 cut(s) 250, 460
BseNI ACTGG 1 cut(s) 575
BseRI GAGGAG 4 cut(s) 38, 62, 301, 1007
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 116
Bsh1236I CGCG 4 cut(s) 725, 752, 764, 869
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 6 cut(s) 135, 362, 551, 667, 832, 1024
BsiEI CGRYCG 1 cut(s) 136
BsiSI CCGG 4 cut(s) 255, 359, 664, 825
BslFI GGGAC 2 cut(s) 263, 931
BslI CCNNNNNNNGG 3 cut(s) 119, 324, 839
BsmAI GTCTC 2 cut(s) 679, 815
BsmFI GGGAC 2 cut(s) 263, 931
BsmI GAATGC 2 cut(s) 354, 484
BsnI GGCC 6 cut(s) 135, 362, 551, 667, 832, 1024
Bso31I GGTCTC 1 cut(s) 815
Bsp13I TCCGGA 1 cut(s) 254
Bsp143I GATC 3 cut(s) 28, 700, 961
BspANI GGCC 6 cut(s) 135, 362, 551, 667, 832, 1024
BspCNI CTCAG 2 cut(s) 249, 459
BspEI TCCGGA 1 cut(s) 254
BspFNI CGCG 4 cut(s) 725, 752, 764, 869
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 5 cut(s) 278, 279, 332, 435, 702
BspPI GGATC 2 cut(s) 695, 708
BspTI CTTAAG 1 cut(s) 1034
BspTNI GGTCTC 1 cut(s) 815
BsrBI CCGCTC 3 cut(s) 840, 902, 1003
BsrFI RCCGGY 1 cut(s) 663
BsrI ACTGG 1 cut(s) 575
BssAI RCCGGY 1 cut(s) 663
BssECI CCNNGG 2 cut(s) 546, 1048
BssMI GATC 3 cut(s) 28, 700, 961
BssNI GRCGYC 1 cut(s) 920
BssT1I CCWWGG 1 cut(s) 1048
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 920
BstAFI CTTAAG 1 cut(s) 1034
BstBAI YACGTR 1 cut(s) 430
BstC8I GCNNGC 3 cut(s) 510, 873, 900
BstDEI CTNAG 2 cut(s) 236, 446
BstF5I GGATG 3 cut(s) 51, 177, 441
BstFNI CGCG 4 cut(s) 725, 752, 764, 869
BstH2I RGCGCY 2 cut(s) 110, 777
BstHHI GCGC 4 cut(s) 109, 725, 776, 871
BstKTI GATC 3 cut(s) 31, 703, 964
BstMAI GTCTC 2 cut(s) 679, 815
BstMBI GATC 3 cut(s) 28, 700, 961
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 4 cut(s) 227, 502, 557, 1030
BstSCI CCNGG 1 cut(s) 824
BstUI CGCG 4 cut(s) 725, 752, 764, 869
BstV1I GCAGC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
BstZI CGGCCG 1 cut(s) 133
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 6 cut(s) 135, 362, 551, 667, 832, 1024
BtgZI GCGATG 2 cut(s) 364, 486
BtsCI GGATG 3 cut(s) 51, 177, 441
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 3 cut(s) 510, 873, 900
CciI TCATGA 1 cut(s) 267
CfoI GCGC 4 cut(s) 109, 725, 776, 871
Cfr10I RCCGGY 1 cut(s) 663
Cfr13I GGNCC 3 cut(s) 277, 666, 1022
CseI GACGC 4 cut(s) 253, 758, 770, 928
Csp6I GTAC 2 cut(s) 733, 952
CviAII CATG 2 cut(s) 268, 625
CviQI GTAC 2 cut(s) 733, 952
DdeI CTNAG 2 cut(s) 236, 446
DpnI GATC 3 cut(s) 30, 702, 963
DpnII GATC 3 cut(s) 28, 700, 961
EaeI YGGCCR 3 cut(s) 133, 360, 830
EagI CGGCCG 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EciI GGCGGA 4 cut(s) 147, 197, 304, 920
EclXI CGGCCG 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 1048
Eco31I GGTCTC 1 cut(s) 815
Eco47I GGWCC 1 cut(s) 277
Eco47III AGCGCT 1 cut(s) 775
Eco52I CGGCCG 1 cut(s) 133
Eco72I CACGTG 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 1048
ErhI CCWWGG 1 cut(s) 1048
FaeI CATG 2 cut(s) 271, 628
FaqI GGGAC 2 cut(s) 263, 931
FatI CATG 2 cut(s) 267, 624
FauI CCCGC 4 cut(s) 235, 445, 925, 980
FauNDI CATATG 1 cut(s) 1042
FbaI TGATCA 1 cut(s) 28
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 9 cut(s) 105, 110, 113, 318, 506, 513, 852, 903, 1004
FokI GGATG 3 cut(s) 38, 164, 428
Fsp4HI GCNGC 9 cut(s) 105, 110, 113, 318, 506, 513, 852, 903, 1004
GlaI GCGC 4 cut(s) 108, 724, 775, 870
GluI GCNGC 9 cut(s) 105, 110, 113, 318, 506, 513, 852, 903, 1004
GsuI CTGGAG 1 cut(s) 334
HaeII RGCGCY 2 cut(s) 110, 777
HaeIII GGCC 6 cut(s) 135, 362, 551, 667, 832, 1024
HapII CCGG 4 cut(s) 255, 359, 664, 825
HgaI GACGC 4 cut(s) 253, 758, 770, 928
HhaI GCGC 4 cut(s) 109, 725, 776, 871
Hin1I GRCGYC 1 cut(s) 920
Hin1II CATG 2 cut(s) 271, 628
Hin6I GCGC 4 cut(s) 107, 723, 774, 869
HinP1I GCGC 4 cut(s) 107, 723, 774, 869
HincII GTYRAC 2 cut(s) 175, 682
HindII GTYRAC 2 cut(s) 175, 682
HinfI GANTC 2 cut(s) 123, 258
HpaII CCGG 4 cut(s) 255, 359, 664, 825
HphI GGTGA 4 cut(s) 84, 295, 640, 904
Hpy166II GTNNAC 5 cut(s) 175, 682, 733, 760, 952
Hpy188I TCNGA 4 cut(s) 122, 340, 705, 820
Hpy188III TCNNGA 4 cut(s) 255, 268, 563, 698
Hpy8I GTNNAC 5 cut(s) 175, 682, 733, 760, 952
Hpy99I CGWCG 4 cut(s) 176, 389, 752, 838
HpyAV CCTTC 5 cut(s) 253, 424, 552, 631, 922
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 2 cut(s) 204, 429
HpyCH4V TGCA 2 cut(s) 4, 715
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 502, 557, 1030
HpyF3I CTNAG 2 cut(s) 236, 446
HpySE526I ACGT 2 cut(s) 204, 429
Hsp92I GRCGYC 1 cut(s) 920
Hsp92II CATG 2 cut(s) 271, 628
HspAI GCGC 4 cut(s) 107, 723, 774, 869
KflI GGGWCCC 1 cut(s) 277
Kpn2I TCCGGA 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 3 cut(s) 28, 700, 961
LmnI GCTCC 3 cut(s) 245, 336, 565
LpnPI CCDG 9 cut(s) 268, 364, 372, 588, 677, 755, 838, 857, 1038
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 1 cut(s) 623
MaeII ACGT 2 cut(s) 204, 429
MaeIII GTNAC 1 cut(s) 605
MalI GATC 3 cut(s) 30, 702, 963
MbiI CCGCTC 3 cut(s) 840, 902, 1003
MboI GATC 3 cut(s) 28, 700, 961
MboII GAAGA 8 cut(s) 77, 205, 337, 391, 578, 581, 584, 937
MflI RGATCY 1 cut(s) 700
MluCI AATT 4 cut(s) 6, 62, 596, 631
MluI ACGCGT 1 cut(s) 762
MmeI TCCRAC 2 cut(s) 273, 363
MroI TCCGGA 1 cut(s) 254
MseI TTAA 3 cut(s) 9, 656, 1035
MslI CAYNNNNRTG 1 cut(s) 36
MspCI CTTAAG 1 cut(s) 1034
MspI CCGG 4 cut(s) 255, 359, 664, 825
MspR9I CCNGG 1 cut(s) 826
Mva1269I GAATGC 2 cut(s) 354, 484
MvnI CGCG 4 cut(s) 725, 752, 764, 869
MwoI GCNNNNNNNGC 4 cut(s) 227, 502, 557, 1030
NciI CCSGG 1 cut(s) 826
NdeI CATATG 1 cut(s) 1042
NdeII GATC 3 cut(s) 28, 700, 961
NlaIII CATG 2 cut(s) 271, 628
NlaIV GGNNCC 5 cut(s) 278, 279, 332, 435, 702
NmeAIII GCCGAG 2 cut(s) 161, 527
NmuCI GTSAC 1 cut(s) 605
PagI TCATGA 1 cut(s) 267
PctI GAATGC 2 cut(s) 354, 484
PfeI GAWTC 2 cut(s) 123, 258
PkrI GCNGC 9 cut(s) 106, 111, 114, 319, 507, 514, 853, 904, 1005
PmaCI CACGTG 1 cut(s) 430
PmlI CACGTG 1 cut(s) 430
Ppu21I YACGTR 1 cut(s) 430
PpuMI RGGWCCY 1 cut(s) 277
PsiI TTATAA 1 cut(s) 879
Psp5II RGGWCCY 1 cut(s) 277
PspCI CACGTG 1 cut(s) 430
PspN4I GGNNCC 5 cut(s) 278, 279, 332, 435, 702
PspPI GGNCC 3 cut(s) 277, 666, 1022
PspPPI RGGWCCY 1 cut(s) 277
PsuI RGATCY 1 cut(s) 700
RsaI GTAC 2 cut(s) 734, 953
RsaNI GTAC 2 cut(s) 733, 952
RseI CAYNNNNRTG 1 cut(s) 36
SalI GTCGAC 1 cut(s) 173
SaqAI TTAA 3 cut(s) 9, 656, 1035
SatI GCNGC 9 cut(s) 105, 110, 113, 318, 506, 513, 852, 903, 1004
Sau3AI GATC 3 cut(s) 28, 700, 961
Sau96I GGNCC 3 cut(s) 277, 666, 1022
ScrFI CCNGG 1 cut(s) 826
SfaNI GCATC 1 cut(s) 623
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 1034
SmoI CTYRAG 1 cut(s) 1034
Sse9I AATT 4 cut(s) 6, 62, 596, 631
StyD4I CCNGG 1 cut(s) 824
StyI CCWWGG 1 cut(s) 1048
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 2 cut(s) 207, 432
TaqI TCGA 2 cut(s) 174, 747
TasI AATT 4 cut(s) 6, 62, 596, 631
TatI WGTACW 1 cut(s) 951
TauI GCSGC 8 cut(s) 112, 115, 320, 508, 515, 854, 905, 1006
TfiI GAWTC 2 cut(s) 123, 258
Tru1I TTAA 3 cut(s) 9, 656, 1035
Tru9I TTAA 3 cut(s) 9, 656, 1035
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 605
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 605
TspDTI ATGAA 2 cut(s) 613, 993
TspGWI ACGGA 1 cut(s) 508
TspRI CASTG 1 cut(s) 327
Vha464I CTTAAG 1 cut(s) 1034
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.