Rh4CG181000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0009684
Physical Location & Seq
Forward (+)
39208448 .. 39225427
16980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG181000.1

Sequence Viewer

Length: 339 bp
ATGACCCTGGAATTCCACCCTTTCATCAACAATCTGAGCAAACACATGCTCAAATGTGACCTTACTGGCCCTTCCATGGTTCTCATCCTTCGATTGCTGCAGCACCATTCTGGGATTAAGCCTCCTGAGCCCTCTGCAGGGGCAAGCAGATATGCTCAAAATGGTGCTTCTGCTTCAGGTCAGGGCTCAAACATGACGGGTGGAAACCAAAACAATGTAGATATGGTCCACATGAAAGCAGCAAGGGAATGCTGGCGCCATTTGACAGAAGTGGTTTCTTACCCGGATAATCAGCTGACCATTTGGGAGGAACATATCCAAAAACCAAAGATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.5

Weight (kDa)

7.06

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 255
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 256
AfiI CCNNNNNNNGG 3 cut(s) 76, 137, 138
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 3 cut(s) 97, 100, 239
ApoI RAATTY 1 cut(s) 11
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 68, 226
AsuC2I CCSGG 1 cut(s) 284
AvaII GGWCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 2 cut(s) 132, 188
BbvI GCAGC 3 cut(s) 84, 112, 251
BciT130I CCWGG 1 cut(s) 8
BcnI CCSGG 1 cut(s) 284
BfmI CTRYAG 2 cut(s) 98, 135
BfoI RGCGCY 1 cut(s) 259
BisI GCNGC 3 cut(s) 98, 101, 240
BlsI GCNGC 3 cut(s) 99, 102, 241
Bme1390I CCNGG 2 cut(s) 8, 284
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 68, 226
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 2 cut(s) 8, 284
Bpu10I CCTNAGC 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 6, 75
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 137, 138
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 6, 75
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 3 cut(s) 76, 137, 138
BseMII CTCAG 2 cut(s) 26, 117
BseNI ACTGG 1 cut(s) 70
BseXI GCAGC 3 cut(s) 84, 112, 251
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 3 cut(s) 76, 137, 138
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 132, 188
Bsp19I CCATGG 1 cut(s) 75
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 2 cut(s) 27, 118
BspLI GGNNCC 1 cut(s) 257
BspMAI CTGCAG 2 cut(s) 102, 139
BspT107I GGYRCC 1 cut(s) 255
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 6, 75
BssNI GRCGYC 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 145, 254
BstDEI CTNAG 2 cut(s) 35, 126
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 6, 282
BstSFI CTRYAG 2 cut(s) 98, 135
BstV1I GCAGC 3 cut(s) 84, 112, 251
BsuRI GGCC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 145, 254
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 68, 226
CviAII CATG 4 cut(s) 46, 76, 193, 232
CviJI RGCY 5 cut(s) 69, 121, 130, 186, 295
CviKI_1 RGCY 5 cut(s) 69, 121, 130, 186, 295
DdeI CTNAG 2 cut(s) 35, 126
DinI GGCGCC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 2 cut(s) 132, 188
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 2 cut(s) 132, 188
EgeI GGCGCC 1 cut(s) 257
EheI GGCGCC 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 4 cut(s) 49, 79, 196, 235
FaiI YATR 7 cut(s) 47, 77, 153, 194, 224, 233, 315
FatI CATG 4 cut(s) 45, 75, 192, 231
Fnu4HI GCNGC 3 cut(s) 98, 101, 240
FokI GGATG 1 cut(s) 71
FriOI GRGCYC 2 cut(s) 132, 188
Fsp4HI GCNGC 3 cut(s) 98, 101, 240
GlaI GCGC 1 cut(s) 257
GluI GCNGC 3 cut(s) 98, 101, 240
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 1 cut(s) 69
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 258
Hin1I GRCGYC 1 cut(s) 256
Hin1II CATG 4 cut(s) 49, 79, 196, 235
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HpaII CCGG 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 81, 98
HpyCH4V TGCA 2 cut(s) 100, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 2 cut(s) 35, 126
Hsp92I GRCGYC 1 cut(s) 256
Hsp92II CATG 4 cut(s) 49, 79, 196, 235
HspAI GCGC 1 cut(s) 256
KasI GGCGCC 1 cut(s) 255
LpnPI CCDG 9 cut(s) 20, 51, 96, 123, 138, 162, 167, 238, 297
Lsp1109I GCAGC 3 cut(s) 84, 112, 251
MaeIII GTNAC 1 cut(s) 56
MhlI GDGCHC 2 cut(s) 132, 188
MluCI AATT 1 cut(s) 11
Mly113I GGCGCC 1 cut(s) 256
MnlI CCTC 3 cut(s) 132, 142, 301
MseI TTAA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 2 cut(s) 8, 284
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 127
NarI GGCGCC 1 cut(s) 256
NciI CCSGG 1 cut(s) 284
NcoI CCATGG 1 cut(s) 75
NlaIII CATG 4 cut(s) 49, 79, 196, 235
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 1 cut(s) 49
PctI GAATGC 1 cut(s) 254
PkrI GCNGC 3 cut(s) 99, 102, 241
PluTI GGCGCC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 2 cut(s) 68, 226
PstI CTGCAG 2 cut(s) 102, 139
PvuII CAGCTG 1 cut(s) 295
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 3 cut(s) 98, 101, 240
Sau96I GGNCC 2 cut(s) 68, 226
ScrFI CCNGG 2 cut(s) 8, 284
SduI GDGCHC 2 cut(s) 132, 188
SetI ASST 3 cut(s) 63, 181, 297
SfcI CTRYAG 2 cut(s) 98, 135
SfoI GGCGCC 1 cut(s) 257
SinI GGWCC 1 cut(s) 226
Sse9I AATT 1 cut(s) 11
SspDI GGCGCC 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 6, 282
StyI CCWWGG 1 cut(s) 75
TaqI TCGA 1 cut(s) 91
TasI AATT 1 cut(s) 11
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 3 cut(s) 97, 100, 239
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 13, 248
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.