Rroxscaffold_5G00356210

Serine/Threonine protein kinases, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
35408470 .. 35409937
1468 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00356210.1

Sequence Viewer

Length: 336 bp
ATGGATGCTCTTGATTCTGATGACTTCTGGACTTACCCATTACCTTGTGATGCCAAAAGTCTACCCAAGTATGAACCCTCACACAAGTTTCAGAGAATGAAAGAGAAGCATCAGCAGCTGAAATGGCAATACGAACAGAGCTGCATAATGTCACAAAGGGTAGAATCGACATCACATGACCCTGGAATTCCACCCTTTCTCAGCCTCCGATTTATGCAGCACCATTCTGGGATTAAGCCTCCTGAGCCTTCTGCAGGGGCAAGCAGATATGCTCAAAATGGTGCTTCTGCTTCAGGTCAGGGCTCACACATGGCGGGTGGAAACCGAAACAAGTGA

Protein Analysis

111

Amino Acids

12.49

Weight (kDa)

8.6

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 61
AciI CCGC 1 cut(s) 314
AcsI RAATTY 1 cut(s) 186
AcuI CTGAAG 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 254
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 2 cut(s) 118, 141
AluI AGCT 2 cut(s) 118, 141
AlwNI CAGNNNCTG 1 cut(s) 118
ApeKI GCWGC 3 cut(s) 115, 141, 217
ApoI RAATTY 1 cut(s) 186
BanII GRGCYC 1 cut(s) 305
BbvI GCAGC 3 cut(s) 127, 128, 229
BciT130I CCWGG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 3 cut(s) 116, 142, 218
BlsI GCNGC 3 cut(s) 117, 143, 219
Bme1390I CCNGG 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 2 cut(s) 40, 118
Bpu10I CCTNAGC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 2 cut(s) 214, 234
BseXI GCAGC 3 cut(s) 127, 128, 229
BslI CCNNNNNNNGG 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 305
BspACI CCGC 1 cut(s) 314
BspCNI CTCAG 2 cut(s) 213, 235
BspMAI CTGCAG 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 200, 243
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 10
BstMWI GCNNNNNNNGC 3 cut(s) 115, 124, 244
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 3 cut(s) 127, 128, 229
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 262
CaiI CAGNNNCTG 1 cut(s) 118
CviAII CATG 2 cut(s) 176, 310
CviJI RGCY 6 cut(s) 118, 141, 204, 238, 247, 303
CviKI_1 RGCY 6 cut(s) 118, 141, 204, 238, 247, 303
DdeI CTNAG 2 cut(s) 200, 243
Eco24I GRGCYC 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 276
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 305
FaeI CATG 2 cut(s) 179, 313
FaiI YATR 6 cut(s) 72, 146, 177, 215, 270, 311
FatI CATG 2 cut(s) 175, 309
FauI CCCGC 1 cut(s) 307
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 3 cut(s) 116, 142, 218
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 3 cut(s) 116, 142, 218
GluI GCNGC 3 cut(s) 116, 142, 218
Hin1II CATG 2 cut(s) 179, 313
HinfI GANTC 2 cut(s) 14, 164
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 3 cut(s) 19, 93, 209
Hpy188III TCNNGA 3 cut(s) 11, 28, 242
Hpy8I GTNNAC 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 144, 217, 254
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 124, 244
HpyF3I CTNAG 2 cut(s) 200, 243
Hsp92II CATG 2 cut(s) 179, 313
LpnPI CCDG 8 cut(s) 13, 168, 195, 213, 240, 255, 279, 284
Lsp1109I GCAGC 3 cut(s) 127, 128, 229
LweI GCATC 2 cut(s) 40, 118
MaeIII GTNAC 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 1 cut(s) 186
MnlI CCTC 3 cut(s) 88, 215, 249
MseI TTAA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 118
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 3 cut(s) 115, 124, 244
NlaIII CATG 2 cut(s) 179, 313
NmuCI GTSAC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 14, 164
PkrI GCNGC 3 cut(s) 117, 143, 219
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 118
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 3 cut(s) 116, 142, 218
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 305
SetI ASST 4 cut(s) 46, 120, 143, 298
SfaNI GCATC 2 cut(s) 40, 118
SfcI CTRYAG 1 cut(s) 252
Sse9I AATT 1 cut(s) 186
SsiI CCGC 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 181
TaqI TCGA 1 cut(s) 167
TasI AATT 1 cut(s) 186
TfiI GAWTC 2 cut(s) 14, 164
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 3 cut(s) 115, 141, 217
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 2 cut(s) 87, 113
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.