Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009684

Physical Location & Seq

Genomic Coordinates Reverse (-)

29066219 .. 29068210

Gene Structure 1992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008335

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCATACCCTTGATCCTTCTCAGAGAATATGGATGCTCTTGATTCTGCACCAGTTTGGGATTAAGCCTCCCGAGCCCTCTGCAGGGGCAAGCAGATATGCTCAAAATGGTGCTTCTACTTCAGATAACAGTGAAGTATATTTGAGGCCCTCCGACGCTCCACCCAAGCCCTCCTGCGTTCGCCCAGCCCCTCCGGCGCTAGACCCAGCCACTCCGGCGTTCGACATTCGACCCAGGCGCCATTCCGGCGTTCGACGTTCGACCAAGGCGCACTGGACCCAGCCCCTCCGGCGTTCAGCACTCTACCCAGGCCCTCCGACGCTCGATCTAGCCCCTCCGTTGCTCAACCAAGGCCCAGCCCCTCTGGCGCTAGACCCAGCCACTCCGGCGTTCGACGTTCGACCCAGGCGCCATTCCAGCATTCGACGTTCGACCAAGGCGCACTGGACCCAGCCCCTCTGGCGTTCGGCACTCTACCCAGGCCCTCCGACGCTCGATCTAGCCCCTCCGTTGCTCAACCAAGGCTCTCCGGTGCTGGACCAAGGTTCTCCGGCGTTGGTGGTGGTGGAGAACGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.08

Weight (kDa)

10.18

Isoelectric Point (pI)

80.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34270
malus_domestica	MD13G1093100.v1.1 MD16G1094100.v1.1 MD16G1094300.v1.1
prunus_persica	Prupe.1G252400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0443721
rosa_laevigata	RLG00000002294 RLG00000005897 RLG00000008335 RLG00000013796 RLG00000022180
rosa_multiflora	Rmu_sc0001426.1_g000009
rosa_roxburghii	Rroxscaffold_5G00356210 Rroxscaffold_5G00384280
rosa_samantha	Rh4AG169500 Rh4AG406700 Rh4BG166300 Rh4BG417800 Rh4CG181000 Rh4CG432000 Rh4DG413100
rosa_wichuraiana	Rw4G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	237, 408
AclWI	GGATC	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	105
AcyI	GRCGYC	2 cut(s)	238, 409
AfiI	CCNNNNNNNGG	2 cut(s)	83, 84
AjnI	CCWGG	4 cut(s)	233, 307, 404, 478
AlwI	GGATC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	4 cut(s)	146, 310, 352, 481
AspLEI	GCGC	6 cut(s)	199, 240, 271, 370, 411, 442
AspS9I	GGNCC	7 cut(s)	147, 276, 311, 353, 447, 482, 538
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	3 cut(s)	276, 447, 538
BanI	GGYRCC	2 cut(s)	237, 408
BanII	GRGCYC	1 cut(s)	78
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	4 cut(s)	235, 309, 406, 480
BfaI	CTAG	4 cut(s)	200, 329, 371, 500
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	4 cut(s)	200, 241, 371, 412
BglI	GCCNNNNNGGC	7 cut(s)	194, 215, 246, 289, 365, 386, 460
Bme1390I	CCNGG	4 cut(s)	235, 309, 406, 480
Bme18I	GGWCC	3 cut(s)	276, 447, 538
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	7 cut(s)	147, 276, 311, 353, 447, 482, 538
BmiI	GGNNCC	4 cut(s)	239, 278, 410, 449
BmrFI	CCNGG	4 cut(s)	235, 309, 406, 480
BmsI	GCATC	1 cut(s)	24
BsaHI	GRCGYC	2 cut(s)	238, 409
BsaJI	CCNNGG	9 cut(s)	233, 264, 307, 349, 404, 435, 478, 520, 541
BsaWI	WCCGGW	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 84
Bse1I	ACTGG	3 cut(s)	52, 278, 449
BseBI	CCWGG	4 cut(s)	235, 309, 406, 480
BseDI	CCNNGG	9 cut(s)	233, 264, 307, 349, 404, 435, 478, 520, 541
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	2 cut(s)	83, 84
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	3 cut(s)	52, 278, 449
BseYI	CCCAGC	6 cut(s)	184, 205, 279, 355, 376, 450
BsgI	GTGCAG	1 cut(s)	32
BshFI	GGCC	4 cut(s)	148, 312, 354, 483
BshNI	GGYRCC	2 cut(s)	237, 408
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	7 cut(s)	194, 215, 246, 289, 386, 530, 551
BslI	CCNNNNNNNGG	2 cut(s)	83, 84
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	4 cut(s)	148, 312, 354, 483
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	4 cut(s)	13, 325, 496, 574
BspANI	GGCC	4 cut(s)	148, 312, 354, 483
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	4 cut(s)	239, 278, 410, 449
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	1 cut(s)	8
BspT107I	GGYRCC	2 cut(s)	237, 408
BsrI	ACTGG	3 cut(s)	52, 278, 449
BssECI	CCNNGG	9 cut(s)	233, 264, 307, 349, 404, 435, 478, 520, 541
BssMI	GATC	4 cut(s)	13, 325, 496, 574
BssNI	GRCGYC	2 cut(s)	238, 409
BssT1I	CCWWGG	5 cut(s)	264, 349, 435, 520, 541
Bst2UI	CCWGG	4 cut(s)	235, 309, 406, 480
Bst4CI	ACNGT	1 cut(s)	131
BstACI	GRCGYC	2 cut(s)	238, 409
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	39
BstH2I	RGCGCY	4 cut(s)	200, 241, 371, 412
BstHHI	GCGC	6 cut(s)	199, 240, 271, 370, 411, 442
BstKTI	GATC	4 cut(s)	16, 328, 499, 577
BstMBI	GATC	4 cut(s)	13, 325, 496, 574
BstMWI	GCNNNNNNNGC	9 cut(s)	73, 194, 215, 246, 289, 365, 386, 417, 460
BstNI	CCWGG	4 cut(s)	235, 309, 406, 480
BstSCI	CCNGG	4 cut(s)	233, 307, 404, 478
BstSFI	CTRYAG	1 cut(s)	81
BsuRI	GGCC	4 cut(s)	148, 312, 354, 483
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	3 cut(s)	136, 271, 442
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	6 cut(s)	199, 240, 271, 370, 411, 442
Cfr13I	GGNCC	7 cut(s)	147, 276, 311, 353, 447, 482, 538
CseI	GACGC	3 cut(s)	164, 328, 499
DdeI	CTNAG	1 cut(s)	21
DinI	GGCGCC	2 cut(s)	239, 410
DpnI	GATC	4 cut(s)	15, 327, 498, 576
DpnII	GATC	4 cut(s)	13, 325, 496, 574
Eco130I	CCWWGG	5 cut(s)	264, 349, 435, 520, 541
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	3 cut(s)	276, 447, 538
Eco57I	CTGAAG	1 cut(s)	105
Eco88I	CYCGRG	1 cut(s)	71
EcoO109I	RGGNCCY	3 cut(s)	147, 311, 482
EcoRII	CCWGG	4 cut(s)	233, 307, 404, 478
EcoT14I	CCWWGG	5 cut(s)	264, 349, 435, 520, 541
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	78
EgeI	GGCGCC	2 cut(s)	239, 410
EheI	GGCGCC	2 cut(s)	239, 410
ErhI	CCWWGG	5 cut(s)	264, 349, 435, 520, 541
FaiI	YATR	4 cut(s)	6, 31, 99, 139
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	78
FspBI	CTAG	4 cut(s)	200, 329, 371, 500
GlaI	GCGC	6 cut(s)	198, 239, 270, 369, 410, 441
GsaI	CCCAGC	6 cut(s)	188, 209, 283, 359, 380, 454
HaeII	RGCGCY	4 cut(s)	200, 241, 371, 412
HaeIII	GGCC	4 cut(s)	148, 312, 354, 483
HapII	CCGG	7 cut(s)	194, 215, 246, 289, 386, 530, 551
HgaI	GACGC	3 cut(s)	164, 328, 499
HhaI	GCGC	6 cut(s)	199, 240, 271, 370, 411, 442
Hin1I	GRCGYC	2 cut(s)	238, 409
Hin6I	GCGC	6 cut(s)	197, 238, 269, 368, 409, 440
HinP1I	GCGC	6 cut(s)	197, 238, 269, 368, 409, 440
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	7 cut(s)	194, 215, 246, 289, 386, 530, 551
Hpy188I	TCNGA	5 cut(s)	24, 124, 154, 318, 489
Hpy188III	TCNNGA	2 cut(s)	40, 71
Hpy99I	CGWCG	6 cut(s)	158, 258, 322, 398, 429, 493
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	3 cut(s)	256, 396, 427
HpyCH4V	TGCA	3 cut(s)	4, 49, 83
HpyF10VI	GCNNNNNNNGC	9 cut(s)	73, 194, 215, 246, 289, 365, 386, 417, 460
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	3 cut(s)	256, 396, 427
Hsp92I	GRCGYC	2 cut(s)	238, 409
HspAI	GCGC	6 cut(s)	197, 238, 269, 368, 409, 440
KasI	GGCGCC	2 cut(s)	237, 408
Kzo9I	GATC	4 cut(s)	13, 325, 496, 574
LmnI	GCTCC	1 cut(s)	163
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	4 cut(s)	200, 329, 371, 500
MaeII	ACGT	3 cut(s)	256, 396, 427
MalI	GATC	4 cut(s)	15, 327, 498, 576
MboI	GATC	4 cut(s)	13, 325, 496, 574
MhlI	GDGCHC	1 cut(s)	78
Mly113I	GGCGCC	2 cut(s)	238, 409
MmeI	TCCRAC	3 cut(s)	177, 341, 512
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	63
MspI	CCGG	7 cut(s)	194, 215, 246, 289, 386, 530, 551
MspR9I	CCNGG	4 cut(s)	235, 309, 406, 480
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	4 cut(s)	235, 309, 406, 480
MwoI	GCNNNNNNNGC	9 cut(s)	73, 194, 215, 246, 289, 365, 386, 417, 460
NarI	GGCGCC	2 cut(s)	238, 409
NdeII	GATC	4 cut(s)	13, 325, 496, 574
NlaIV	GGNNCC	4 cut(s)	239, 278, 410, 449
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	43
PluTI	GGCGCC	2 cut(s)	241, 412
Psp6I	CCWGG	4 cut(s)	233, 307, 404, 478
PspFI	CCCAGC	6 cut(s)	184, 205, 279, 355, 376, 450
PspGI	CCWGG	4 cut(s)	233, 307, 404, 478
PspN4I	GGNNCC	4 cut(s)	239, 278, 410, 449
PspPI	GGNCC	7 cut(s)	147, 276, 311, 353, 447, 482, 538
PstI	CTGCAG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	13, 325, 496, 574
Sau96I	GGNCC	7 cut(s)	147, 276, 311, 353, 447, 482, 538
ScrFI	CCNGG	4 cut(s)	235, 309, 406, 480
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	4 cut(s)	259, 399, 430, 547
SfaNI	GCATC	1 cut(s)	24
SfcI	CTRYAG	1 cut(s)	81
SfoI	GGCGCC	2 cut(s)	239, 410
SinI	GGWCC	3 cut(s)	276, 447, 538
SspDI	GGCGCC	2 cut(s)	237, 408
SspMI	CTAG	4 cut(s)	200, 329, 371, 500
StyD4I	CCNGG	4 cut(s)	233, 307, 404, 478
StyI	CCWWGG	5 cut(s)	264, 349, 435, 520, 541
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	3 cut(s)	259, 399, 430
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	3 cut(s)	136, 278, 449
TspGWI	ACGGA	2 cut(s)	327, 498
TspRI	CASTG	3 cut(s)	136, 278, 449
VpaK11BI	GGWCC	3 cut(s)	276, 447, 538
XspI	CTAG	4 cut(s)	200, 329, 371, 500
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.