Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009684

Physical Location & Seq

Genomic Coordinates Forward (+)

42632377 .. 42640931

Gene Structure 8555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG169500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATGCTCTTGATTTTGATAACTTCTGGACTTACCCATTACCTTGTGAAGCCAAAAGTATACCCAAGTATGAACCCTCACACAAGTTTCAGAGAATGAAAAAGAAGCATCAGCAGCTGCAATGGCAATATGAACAGAATGCTGCACAATGTCACAAAGGGTCAGGGCTCAAACATGACGGGTGGAAACCAAAACAAGTGATGCTTAGATCAGAGGATCTTAAGTTGACTTTCCTACTCCCTCATGTTCCTTTTGCAGATTTAACTGTTAAAGGAGTATATTTGAGTGCAGATATGGTCCACATGAAAGCAGCAAGGGAATACTGGCGCCATTTGACAGAAGTGGTTTCTTACCCGGATAATCAGCTGACCATTTGGGAGGAACATATCCAAAAACCAAAGATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

136

Amino Acids

16.18

Weight (kDa)

8.47

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34270
malus_domestica	MD13G1093100.v1.1 MD16G1094100.v1.1 MD16G1094300.v1.1
prunus_persica	Prupe.1G252400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0443721
rosa_laevigata	RLG00000002294 RLG00000005897 RLG00000008335 RLG00000013796 RLG00000022180
rosa_multiflora	Rmu_sc0001426.1_g000009
rosa_roxburghii	Rroxscaffold_5G00356210 Rroxscaffold_5G00384280
rosa_samantha	Rh4AG169500 Rh4AG406700 Rh4BG166300 Rh4BG417800 Rh4CG181000 Rh4CG432000 Rh4DG413100
rosa_wichuraiana	Rw4G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	328
AflII	CTTAAG	1 cut(s)	221
AluBI	AGCT	2 cut(s)	118, 367
AluI	AGCT	2 cut(s)	118, 367
AlwI	GGATC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	118
ApeKI	GCWGC	4 cut(s)	115, 118, 143, 311
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	171
BbvI	GCAGC	4 cut(s)	105, 127, 130, 323
BcnI	CCSGG	1 cut(s)	356
BfoI	RGCGCY	1 cut(s)	331
BfrI	CTTAAG	1 cut(s)	221
BisI	GCNGC	4 cut(s)	116, 119, 144, 312
BlsI	GCNGC	4 cut(s)	117, 120, 145, 313
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	2 cut(s)	118, 192
BpuMI	CCSGG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	4 cut(s)	105, 127, 130, 323
BsgI	GTGCAG	2 cut(s)	129, 309
BshNI	GGYRCC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	209, 217
BspLI	GGNNCC	1 cut(s)	329
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	327
BspTI	CTTAAG	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	329
BssMI	GATC	2 cut(s)	209, 217
BssNAI	GTATAC	1 cut(s)	62
BssNI	GRCGYC	1 cut(s)	328
Bst1107I	GTATAC	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	328
BstAFI	CTTAAG	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	2 cut(s)	212, 220
BstMBI	GATC	2 cut(s)	209, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 124
BstSCI	CCNGG	1 cut(s)	354
BstV1I	GCAGC	4 cut(s)	105, 127, 130, 323
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BstZ17I	GTATAC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	10
CaiI	CAGNNNCTG	1 cut(s)	118
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	298
CviAII	CATG	3 cut(s)	176, 245, 304
CviJI	RGCY	4 cut(s)	53, 118, 169, 367
CviKI_1	RGCY	4 cut(s)	53, 118, 169, 367
DdeI	CTNAG	1 cut(s)	206
DinI	GGCGCC	1 cut(s)	329
DpnI	GATC	2 cut(s)	211, 219
DpnII	GATC	2 cut(s)	209, 217
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	171
EgeI	GGCGCC	1 cut(s)	329
EheI	GGCGCC	1 cut(s)	329
FaeI	CATG	3 cut(s)	179, 248, 307
FaiI	YATR	9 cut(s)	62, 72, 132, 177, 246, 280, 296, 305, 387
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	3 cut(s)	175, 244, 303
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	4 cut(s)	116, 119, 144, 312
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	4 cut(s)	116, 119, 144, 312
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	4 cut(s)	116, 119, 144, 312
HaeII	RGCGCY	1 cut(s)	331
HapII	CCGG	1 cut(s)	356
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	328
Hin1II	CATG	3 cut(s)	179, 248, 307
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HpaII	CCGG	1 cut(s)	356
Hpy166II	GTNNAC	3 cut(s)	62, 228, 301
Hpy188I	TCNGA	2 cut(s)	93, 214
Hpy188III	TCNNGA	2 cut(s)	11, 28
Hpy8I	GTNNAC	3 cut(s)	62, 228, 301
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	121, 146, 257, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 124
HpyF3I	CTNAG	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	328
Hsp92II	CATG	3 cut(s)	179, 248, 307
HspAI	GCGC	1 cut(s)	328
KasI	GGCGCC	1 cut(s)	327
Kzo9I	GATC	2 cut(s)	209, 217
LpnPI	CCDG	4 cut(s)	13, 150, 310, 369
Lsp1109I	GCAGC	4 cut(s)	105, 127, 130, 323
LweI	GCATC	2 cut(s)	118, 192
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	2 cut(s)	211, 219
MboI	GATC	2 cut(s)	209, 217
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	171
Mly113I	GGCGCC	1 cut(s)	328
MnlI	CCTC	4 cut(s)	88, 208, 252, 373
MseI	TTAA	3 cut(s)	222, 263, 270
MspA1I	CMGCKG	2 cut(s)	118, 367
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	115, 124
NarI	GGCGCC	1 cut(s)	328
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	2 cut(s)	209, 217
NlaIII	CATG	3 cut(s)	179, 248, 307
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	152
PctI	GAATGC	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	117, 120, 145, 313
PluTI	GGCGCC	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	217
PvuII	CAGCTG	2 cut(s)	118, 367
SaqAI	TTAA	3 cut(s)	222, 263, 270
SatI	GCNGC	4 cut(s)	116, 119, 144, 312
Sau3AI	GATC	2 cut(s)	209, 217
Sau96I	GGNCC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	3 cut(s)	46, 120, 369
SfaNI	GCATC	2 cut(s)	118, 192
SfoI	GGCGCC	1 cut(s)	329
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SspDI	GGCGCC	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	268
Tru1I	TTAA	3 cut(s)	222, 263, 270
Tru9I	TTAA	3 cut(s)	222, 263, 270
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	4 cut(s)	115, 118, 143, 311
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	4 cut(s)	87, 113, 147, 320
Vha464I	CTTAAG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.