RLG00000022180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009684
Physical Location & Seq
Reverse (-)
81561611 .. 81565464
3854 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022180

Sequence Viewer

Length: 417 bp
ATGCCTGTGGTGCAAAAAGAGTATGATACCCATTTGGAGCGCACAGGCAAATCCCCCGCCGCCATGGGGGAAGACCATGTTTCGATCACTACGAGGCCCTCCGGCGCTCCACCCAGGCCCTCCCGCGTTCGCCCAGCCCCTCCGGCGCTAGACCCAGCCACTCCGGCGTTCGACATTCGACCCAGGCGCCATTTCGGCGTTCGACGTTCGACCAAGGTGCACTGGACCCAGCCCCTCCGGCGTTCGGCGCTCTACCCAGGCCCTTCGACGCTCGATCTAGCCCCTCCGTTGCTCAACCAAGGCCCAGCCCCTCCAGCGCTAGACCCAGCCACTCTGACGTTCGACGTTCGACCCAGGCGCCATTCCGGCGTTCGACGTTCGACCAAGGCGCACTGGACCCAGCCCCTCCGGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.36

Weight (kDa)

11.68

Isoelectric Point (pI)

90.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 186, 357
AccII CGCG 1 cut(s) 126
AciI CCGC 3 cut(s) 57, 60, 124
AcyI GRCGYC 2 cut(s) 187, 358
AfeI AGCGCT 1 cut(s) 318
AfiI CCNNNNNNNGG 2 cut(s) 66, 244
AjnI CCWGG 4 cut(s) 113, 182, 256, 353
Alw21I GWGCWC 1 cut(s) 222
Alw44I GTGCAC 1 cut(s) 218
Aor51HI AGCGCT 1 cut(s) 318
AoxI GGCC 4 cut(s) 95, 116, 259, 301
ApaLI GTGCAC 1 cut(s) 218
AspLEI GCGC 8 cut(s) 42, 107, 148, 189, 250, 319, 360, 391
AspS9I GGNCC 6 cut(s) 96, 117, 225, 260, 302, 396
AvaII GGWCC 2 cut(s) 225, 396
BaeGI GKGCMC 1 cut(s) 222
BanI GGYRCC 2 cut(s) 186, 357
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 222
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciT130I CCWGG 4 cut(s) 115, 184, 258, 355
BfaI CTAG 3 cut(s) 149, 278, 320
BfoI RGCGCY 6 cut(s) 108, 149, 190, 251, 320, 361
BglI GCCNNNNNGGC 6 cut(s) 143, 164, 195, 238, 366, 409
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 4 cut(s) 115, 184, 258, 355
Bme18I GGWCC 2 cut(s) 225, 396
BmgT120I GGNCC 6 cut(s) 96, 117, 225, 260, 302, 396
BmiI GGNNCC 4 cut(s) 188, 227, 359, 398
BmrFI CCNGG 4 cut(s) 115, 184, 258, 355
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 297
BsaHI GRCGYC 2 cut(s) 187, 358
BsaJI CCNNGG 8 cut(s) 63, 113, 182, 213, 256, 298, 353, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 244
Bse1I ACTGG 2 cut(s) 227, 398
BseBI CCWGG 4 cut(s) 115, 184, 258, 355
BseDI CCNNGG 8 cut(s) 63, 113, 182, 213, 256, 298, 353, 384
BseLI CCNNNNNNNGG 2 cut(s) 66, 244
BseNI ACTGG 2 cut(s) 227, 398
BseSI GKGCMC 1 cut(s) 222
BseYI CCCAGC 6 cut(s) 133, 154, 228, 304, 325, 399
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 4 cut(s) 97, 118, 261, 303
BshNI GGYRCC 2 cut(s) 186, 357
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 6 cut(s) 102, 143, 164, 238, 366, 409
BslI CCNNNNNNNGG 2 cut(s) 66, 244
BsnI GGCC 4 cut(s) 97, 118, 261, 303
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 84, 274
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 3 cut(s) 57, 60, 124
BspANI GGCC 4 cut(s) 97, 118, 261, 303
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 4 cut(s) 188, 227, 359, 398
BspT107I GGYRCC 2 cut(s) 186, 357
BsrI ACTGG 2 cut(s) 227, 398
BssECI CCNNGG 8 cut(s) 63, 113, 182, 213, 256, 298, 353, 384
BssMI GATC 2 cut(s) 84, 274
BssNI GRCGYC 2 cut(s) 187, 358
BssT1I CCWWGG 4 cut(s) 63, 213, 298, 384
Bst2UI CCWGG 4 cut(s) 115, 184, 258, 355
BstACI GRCGYC 2 cut(s) 187, 358
BstDSI CCRYGG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 6 cut(s) 108, 149, 190, 251, 320, 361
BstHHI GCGC 8 cut(s) 42, 107, 148, 189, 250, 319, 360, 391
BstKTI GATC 2 cut(s) 87, 277
BstMBI GATC 2 cut(s) 84, 274
BstMWI GCNNNNNNNGC 9 cut(s) 10, 143, 164, 195, 238, 247, 314, 366, 409
BstNI CCWGG 4 cut(s) 115, 184, 258, 355
BstSCI CCNGG 4 cut(s) 113, 182, 256, 353
BstSLI GKGCMC 1 cut(s) 222
BstUI CGCG 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 78
BsuRI GGCC 4 cut(s) 97, 118, 261, 303
BtgI CCRYGG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 220, 391
CfoI GCGC 8 cut(s) 42, 107, 148, 189, 250, 319, 360, 391
Cfr13I GGNCC 6 cut(s) 96, 117, 225, 260, 302, 396
CseI GACGC 1 cut(s) 277
CviAII CATG 2 cut(s) 64, 77
DinI GGCGCC 2 cut(s) 188, 359
DpnI GATC 2 cut(s) 86, 276
DpnII GATC 2 cut(s) 84, 274
Eco130I CCWWGG 4 cut(s) 63, 213, 298, 384
Eco47I GGWCC 2 cut(s) 225, 396
Eco47III AGCGCT 1 cut(s) 318
EcoO109I RGGNCCY 3 cut(s) 96, 117, 260
EcoRII CCWGG 4 cut(s) 113, 182, 256, 353
EcoT14I CCWWGG 4 cut(s) 63, 213, 298, 384
EgeI GGCGCC 2 cut(s) 188, 359
EheI GGCGCC 2 cut(s) 188, 359
ErhI CCWWGG 4 cut(s) 63, 213, 298, 384
FaeI CATG 2 cut(s) 67, 80
FaiI YATR 3 cut(s) 24, 65, 78
FatI CATG 2 cut(s) 63, 76
FauI CCCGC 2 cut(s) 64, 131
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 3 cut(s) 149, 278, 320
GlaI GCGC 8 cut(s) 41, 106, 147, 188, 249, 318, 359, 390
GluI GCNGC 1 cut(s) 60
GsaI CCCAGC 6 cut(s) 137, 158, 232, 308, 329, 403
GsuI CTGGAG 1 cut(s) 297
HaeII RGCGCY 6 cut(s) 108, 149, 190, 251, 320, 361
HaeIII GGCC 4 cut(s) 97, 118, 261, 303
HapII CCGG 6 cut(s) 102, 143, 164, 238, 366, 409
HgaI GACGC 1 cut(s) 277
HhaI GCGC 8 cut(s) 42, 107, 148, 189, 250, 319, 360, 391
Hin1I GRCGYC 2 cut(s) 187, 358
Hin1II CATG 2 cut(s) 67, 80
Hin6I GCGC 8 cut(s) 40, 105, 146, 187, 248, 317, 358, 389
HinP1I GCGC 8 cut(s) 40, 105, 146, 187, 248, 317, 358, 389
HpaII CCGG 6 cut(s) 102, 143, 164, 238, 366, 409
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 336
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 4 cut(s) 207, 271, 347, 378
HpyAV CCTTC 1 cut(s) 273
HpyCH4IV ACGT 4 cut(s) 205, 338, 345, 376
HpyCH4V TGCA 2 cut(s) 13, 220
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 143, 164, 195, 238, 247, 314, 366, 409
HpySE526I ACGT 4 cut(s) 205, 338, 345, 376
Hsp92I GRCGYC 2 cut(s) 187, 358
Hsp92II CATG 2 cut(s) 67, 80
HspAI GCGC 8 cut(s) 40, 105, 146, 187, 248, 317, 358, 389
KasI GGCGCC 2 cut(s) 186, 357
Kzo9I GATC 2 cut(s) 84, 274
LmnI GCTCC 2 cut(s) 37, 112
MaeI CTAG 3 cut(s) 149, 278, 320
MaeII ACGT 4 cut(s) 205, 338, 345, 376
MalI GATC 2 cut(s) 86, 276
MboI GATC 2 cut(s) 84, 274
MboII GAAGA 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 222
Mly113I GGCGCC 2 cut(s) 187, 358
MnlI CCTC 8 cut(s) 87, 109, 130, 150, 245, 294, 321, 416
MspI CCGG 6 cut(s) 102, 143, 164, 238, 366, 409
MspR9I CCNGG 4 cut(s) 115, 184, 258, 355
MvaI CCWGG 4 cut(s) 115, 184, 258, 355
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 9 cut(s) 10, 143, 164, 195, 238, 247, 314, 366, 409
NarI GGCGCC 2 cut(s) 187, 358
NcoI CCATGG 1 cut(s) 63
NdeII GATC 2 cut(s) 84, 274
NlaIII CATG 2 cut(s) 67, 80
NlaIV GGNNCC 4 cut(s) 188, 227, 359, 398
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PkrI GCNGC 1 cut(s) 61
PluTI GGCGCC 2 cut(s) 190, 361
Psp6I CCWGG 4 cut(s) 113, 182, 256, 353
PspFI CCCAGC 6 cut(s) 133, 154, 228, 304, 325, 399
PspGI CCWGG 4 cut(s) 113, 182, 256, 353
PspN4I GGNNCC 4 cut(s) 188, 227, 359, 398
PspPI GGNCC 6 cut(s) 96, 117, 225, 260, 302, 396
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 84, 274
Sau96I GGNCC 6 cut(s) 96, 117, 225, 260, 302, 396
ScrFI CCNGG 4 cut(s) 115, 184, 258, 355
SduI GDGCHC 1 cut(s) 222
SetI ASST 5 cut(s) 208, 219, 341, 348, 379
SfoI GGCGCC 2 cut(s) 188, 359
SinI GGWCC 2 cut(s) 225, 396
SsiI CCGC 3 cut(s) 57, 60, 124
SspDI GGCGCC 2 cut(s) 186, 357
SspMI CTAG 3 cut(s) 149, 278, 320
StyD4I CCNGG 4 cut(s) 113, 182, 256, 353
StyI CCWWGG 4 cut(s) 63, 213, 298, 384
TaiI ACGT 4 cut(s) 208, 341, 348, 379
TauI GCSGC 1 cut(s) 62
TscAI CASTG 2 cut(s) 227, 398
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 2 cut(s) 227, 398
VneI GTGCAC 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 225, 396
XspI CTAG 3 cut(s) 149, 278, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.