RLG00000002294

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009684
Physical Location & Seq
Reverse (-)
31761632 .. 31766272
4641 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002294

Sequence Viewer

Length: 633 bp
ATGAACGAGCATGAGTTGAGATTTCTTGCCGGGCCTCTCCCCCAAGCCCTACGAACCAGCAAGTTGTTGCCGGCGGCCTTCTTTCATTGTAAAGGTTCCAAGGTGTTTTGTGCAGGAGCTTACTTGAAGCCCTGCAAGTTGGAGCTGCTGTGGTTTTGGCGGATCTCACTAGAGACCAGATACAAGCATGGAAAGAAACCCTCCGGCGCTCCACCCAGGCCCTCCCGCGTTCGCCCATTCCCTCCGGCGCTAGACCCAGCCACTCCGGCGTTCGACATTCGACCCAGGCGTCATTCCGGCGTTCGACGTTCGACCAAGGCACACTGGACCCAGCCCCTCCGGCGTTCGGCGCTCTACCCAGGCCCTCCGACGCTCGATCTAGCCCCTCCGTTGCTCAACCAAGGCCCAGCCCCTCCAGCGCTAGACCCAGCCACTCCGGCGTTCGACGTTCGACCTAGGCGCCATTCCGGCGTTCGACGTTCGACCAAGGCGCACTGGACCCAGCCCCTCCGGCGTTCGGCGCTCTACCCAGGCCCTCCGACGCTTGATCTAGCCCCTCCGTTGCTCAACCAAGGCTCTCCGGCGCTGGACCAAGGTTTTCCGGCGTTGGTGGCGGAGGAGAACGATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.31

Weight (kDa)

10.76

Isoelectric Point (pI)

69.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 459
AccII CGCG 1 cut(s) 228
AciI CCGC 4 cut(s) 74, 160, 226, 614
AclWI GGATC 1 cut(s) 170
AcyI GRCGYC 2 cut(s) 289, 460
AfeI AGCGCT 1 cut(s) 420
AfiI CCNNNNNNNGG 2 cut(s) 346, 517
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 4 cut(s) 215, 284, 358, 529
AluBI AGCT 2 cut(s) 119, 145
AluI AGCT 2 cut(s) 119, 145
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 170
Aor51HI AGCGCT 1 cut(s) 420
AoxI GGCC 6 cut(s) 32, 75, 218, 361, 403, 532
ApeKI GCWGC 1 cut(s) 145
AspA2I CCTAGG 1 cut(s) 455
AspLEI GCGC 8 cut(s) 209, 250, 352, 421, 462, 493, 523, 586
AspS9I GGNCC 8 cut(s) 32, 219, 327, 362, 404, 498, 533, 589
AsuC2I CCSGG 1 cut(s) 31
AvaII GGWCC 3 cut(s) 327, 498, 589
AvrII CCTAGG 1 cut(s) 455
BanI GGYRCC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 132
BciT130I CCWGG 4 cut(s) 217, 286, 360, 531
BcnI CCSGG 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 6 cut(s) 170, 251, 380, 422, 456, 551
BfoI RGCGCY 7 cut(s) 210, 251, 353, 422, 463, 524, 587
BglI GCCNNNNNGGC 5 cut(s) 266, 340, 437, 468, 511
BisI GCNGC 2 cut(s) 75, 146
BlnI CCTAGG 1 cut(s) 455
BlsI GCNGC 2 cut(s) 76, 147
Bme1390I CCNGG 5 cut(s) 31, 217, 286, 360, 531
Bme18I GGWCC 3 cut(s) 327, 498, 589
BmgT120I GGNCC 8 cut(s) 32, 219, 327, 362, 404, 498, 533, 589
BmiI GGNNCC 4 cut(s) 97, 329, 461, 500
BmrFI CCNGG 5 cut(s) 31, 217, 286, 360, 531
BpmI CTGGAG 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 31
BsaHI GRCGYC 2 cut(s) 289, 460
BsaI GGTCTC 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 517
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 329, 500
BseBI CCWGG 4 cut(s) 217, 286, 360, 531
BseLI CCNNNNNNNGG 2 cut(s) 346, 517
BseNI ACTGG 2 cut(s) 329, 500
BseRI GAGGAG 1 cut(s) 632
BseXI GCAGC 1 cut(s) 132
BseYI CCCAGC 5 cut(s) 256, 330, 406, 427, 501
BsgI GTGCAG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 6 cut(s) 34, 77, 220, 363, 405, 534
BshNI GGYRCC 1 cut(s) 459
BslI CCNNNNNNNGG 2 cut(s) 346, 517
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 6 cut(s) 34, 77, 220, 363, 405, 534
Bso31I GGTCTC 1 cut(s) 167
Bsp143I GATC 4 cut(s) 162, 376, 547, 625
BspACI CCGC 4 cut(s) 74, 160, 226, 614
BspANI GGCC 6 cut(s) 34, 77, 220, 363, 405, 534
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 4 cut(s) 97, 329, 461, 500
BspPI GGATC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 459
BspTNI GGTCTC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 2 cut(s) 329, 500
BssAI RCCGGY 1 cut(s) 70
BssMI GATC 4 cut(s) 162, 376, 547, 625
BssNI GRCGYC 2 cut(s) 289, 460
BssT1I CCWWGG 7 cut(s) 99, 315, 400, 455, 486, 571, 592
Bst2UI CCWGG 4 cut(s) 217, 286, 360, 531
BstACI GRCGYC 2 cut(s) 289, 460
BstC8I GCNNGC 1 cut(s) 72
BstFNI CGCG 1 cut(s) 228
BstH2I RGCGCY 7 cut(s) 210, 251, 353, 422, 463, 524, 587
BstHHI GCGC 8 cut(s) 209, 250, 352, 421, 462, 493, 523, 586
BstKTI GATC 4 cut(s) 165, 379, 550, 628
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 4 cut(s) 162, 376, 547, 625
BstMWI GCNNNNNNNGC 9 cut(s) 266, 340, 349, 416, 437, 468, 511, 520, 611
BstNI CCWGG 4 cut(s) 217, 286, 360, 531
BstSCI CCNGG 5 cut(s) 29, 215, 284, 358, 529
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuRI GGCC 6 cut(s) 34, 77, 220, 363, 405, 534
BtsIMutI CAGTG 2 cut(s) 322, 493
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 8 cut(s) 209, 250, 352, 421, 462, 493, 523, 586
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 8 cut(s) 32, 219, 327, 362, 404, 498, 533, 589
CseI GACGC 3 cut(s) 278, 379, 550
CviAII CATG 2 cut(s) 11, 188
DinI GGCGCC 1 cut(s) 461
DpnI GATC 4 cut(s) 164, 378, 549, 627
DpnII GATC 4 cut(s) 162, 376, 547, 625
DrdI GACNNNNNNGTC 1 cut(s) 288
DseDI GACNNNNNNGTC 1 cut(s) 288
EciI GGCGGA 2 cut(s) 175, 629
Eco130I CCWWGG 7 cut(s) 99, 315, 400, 455, 486, 571, 592
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 3 cut(s) 327, 498, 589
Eco47III AGCGCT 1 cut(s) 420
EcoO109I RGGNCCY 3 cut(s) 219, 362, 533
EcoRII CCWGG 4 cut(s) 215, 284, 358, 529
EcoT14I CCWWGG 7 cut(s) 99, 315, 400, 455, 486, 571, 592
EgeI GGCGCC 1 cut(s) 461
EheI GGCGCC 1 cut(s) 461
ErhI CCWWGG 7 cut(s) 99, 315, 400, 455, 486, 571, 592
FaeI CATG 2 cut(s) 14, 191
FaiI YATR 2 cut(s) 12, 189
FatI CATG 2 cut(s) 10, 187
FauI CCCGC 1 cut(s) 233
Fnu4HI GCNGC 2 cut(s) 75, 146
Fsp4HI GCNGC 2 cut(s) 75, 146
FspBI CTAG 6 cut(s) 170, 251, 380, 422, 456, 551
GlaI GCGC 8 cut(s) 208, 249, 351, 420, 461, 492, 522, 585
GluI GCNGC 2 cut(s) 75, 146
GsaI CCCAGC 5 cut(s) 260, 334, 410, 431, 505
GsuI CTGGAG 1 cut(s) 399
HaeII RGCGCY 7 cut(s) 210, 251, 353, 422, 463, 524, 587
HaeIII GGCC 6 cut(s) 34, 77, 220, 363, 405, 534
HgaI GACGC 3 cut(s) 278, 379, 550
HhaI GCGC 8 cut(s) 209, 250, 352, 421, 462, 493, 523, 586
Hin1I GRCGYC 2 cut(s) 289, 460
Hin1II CATG 2 cut(s) 14, 191
Hin6I GCGC 8 cut(s) 207, 248, 350, 419, 460, 491, 521, 584
HinP1I GCGC 8 cut(s) 207, 248, 350, 419, 460, 491, 521, 584
Hpy188I TCNGA 2 cut(s) 369, 540
Hpy99I CGWCG 5 cut(s) 309, 373, 449, 480, 544
HpyAV CCTTC 1 cut(s) 88
HpyCH4IV ACGT 3 cut(s) 307, 447, 478
HpyCH4V TGCA 2 cut(s) 113, 135
HpyF10VI GCNNNNNNNGC 9 cut(s) 266, 340, 349, 416, 437, 468, 511, 520, 611
HpySE526I ACGT 3 cut(s) 307, 447, 478
Hsp92I GRCGYC 2 cut(s) 289, 460
Hsp92II CATG 2 cut(s) 14, 191
HspAI GCGC 8 cut(s) 207, 248, 350, 419, 460, 491, 521, 584
KasI GGCGCC 1 cut(s) 459
KroI GCCGGC 1 cut(s) 70
KroNI GCCGGC 1 cut(s) 72
Kzo9I GATC 4 cut(s) 162, 376, 547, 625
LmnI GCTCC 3 cut(s) 116, 142, 214
Lsp1109I GCAGC 1 cut(s) 132
MaeI CTAG 6 cut(s) 170, 251, 380, 422, 456, 551
MaeII ACGT 3 cut(s) 307, 447, 478
MalI GATC 4 cut(s) 164, 378, 549, 627
MboI GATC 4 cut(s) 162, 376, 547, 625
MflI RGATCY 1 cut(s) 162
Mly113I GGCGCC 1 cut(s) 460
MmeI TCCRAC 3 cut(s) 120, 392, 563
MroNI GCCGGC 1 cut(s) 70
MspR9I CCNGG 5 cut(s) 31, 217, 286, 360, 531
MvaI CCWGG 4 cut(s) 217, 286, 360, 531
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 9 cut(s) 266, 340, 349, 416, 437, 468, 511, 520, 611
NaeI GCCGGC 1 cut(s) 72
NarI GGCGCC 1 cut(s) 460
NciI CCSGG 1 cut(s) 31
NdeII GATC 4 cut(s) 162, 376, 547, 625
NgoMIV GCCGGC 1 cut(s) 70
NlaIII CATG 2 cut(s) 14, 191
NlaIV GGNNCC 4 cut(s) 97, 329, 461, 500
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PdiI GCCGGC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 76, 147
PluTI GGCGCC 1 cut(s) 463
Psp6I CCWGG 4 cut(s) 215, 284, 358, 529
PspFI CCCAGC 5 cut(s) 256, 330, 406, 427, 501
PspGI CCWGG 4 cut(s) 215, 284, 358, 529
PspN4I GGNNCC 4 cut(s) 97, 329, 461, 500
PspPI GGNCC 8 cut(s) 32, 219, 327, 362, 404, 498, 533, 589
PsuI RGATCY 1 cut(s) 162
SatI GCNGC 2 cut(s) 75, 146
Sau3AI GATC 4 cut(s) 162, 376, 547, 625
Sau96I GGNCC 8 cut(s) 32, 219, 327, 362, 404, 498, 533, 589
ScrFI CCNGG 5 cut(s) 31, 217, 286, 360, 531
SetI ASST 9 cut(s) 97, 105, 121, 147, 310, 450, 457, 481, 598
SfoI GGCGCC 1 cut(s) 461
SinI GGWCC 3 cut(s) 327, 498, 589
SsiI CCGC 4 cut(s) 74, 160, 226, 614
SspDI GGCGCC 1 cut(s) 459
SspMI CTAG 6 cut(s) 170, 251, 380, 422, 456, 551
StyD4I CCNGG 5 cut(s) 29, 215, 284, 358, 529
StyI CCWWGG 7 cut(s) 99, 315, 400, 455, 486, 571, 592
TaiI ACGT 3 cut(s) 310, 450, 481
TaqI TCGA 9 cut(s) 273, 280, 304, 311, 375, 444, 451, 475, 482
TauI GCSGC 1 cut(s) 77
TscAI CASTG 2 cut(s) 329, 500
TseI GCWGC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 17, 74
TspGWI ACGGA 2 cut(s) 378, 549
TspRI CASTG 2 cut(s) 329, 500
VpaK11BI GGWCC 3 cut(s) 327, 498, 589
XmaJI CCTAGG 1 cut(s) 455
XspI CTAG 6 cut(s) 170, 251, 380, 422, 456, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.