RLG00000005897

Glycosyl hydrolases family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009684
Physical Location & Seq
Forward (+)
2614290 .. 2615948
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005897

Sequence Viewer

Length: 1353 bp
ATGCCAAAGAACTTTGATCATCACTATGACCACCTCCTCATCCTCTGTCAATTCTCACTCTTCTTGCTCAATCTTCTCTCACCCTCGTCCGCAGCGCCGACCCCAATCGGAATCTGCTACGGCCGAGTAGCCAACAACCTCCCTCCGCCCACCGTCGCCGTCGACATCCTCAAAGCCAACAACATAAAAAACGTTCGCCTCTTCAATGCCGACCCCGCCACTCTCAGCTCCTTCTCCAACACCGGAATCAGCGTCATGATCGGGGTCCCCAACGAAATCCTCCCCACCCTCACCACCGCCTCCGCCGCCTTGGAGTGGCTCCAATCCAACATCTTCTCCAGCATTCCGGCCAACCAAGTCCGCTACATCGCCGTCGGCAACGAGGTCTTCCTCAAAGACCCCTTCTACACTCCCCACGTGGTTCCCGCCATCCTCAGCCTCCACCAAGCCCTGCAAACCCTAAATCTCTCGCATTCAATAAAGCTCTCATCGCCGCAAGCTGCCTCCGTGCTATCAATCTCGTACCCTCCTTCCTCGGCCTCGTTCGCTCCCGACCTCAAACCAGTTCTATTTCTTCTTCTTCAATTCTTGCGTGACACGGCATCTCCCTTCATGGTGAATTTGTATCCCTATTTCAGCTACTTGAACAACCGGCCCTATGTCTCTGTTGACTATGCTTTGTTTCGGGATCCGAATCCCGTGCGAGACGGCGCATTGGTGTACGACAACCTGTTCGACGCGAGTGTGGACGCGTTTGTGAGCGCCTTGGAGAGGGAGGGGTTTGGGGGAGTTGAGGTGGTGGTTTCGGAGACCGGGTGGCCGACGAGCGGTGGGGAAGCGGCGAGTGTTGAGAACGCTCTGGCGTATAATAGAGAGGTGGTGAGGTGGGCGGCGGAGGGGGTTGGGACGCCGAAGAAGGTAGGGGCGGGAGTGGAGGTGTACTTGTTTGATCTGTTTGATGAGAATGAAAAAGGCGGGGAGGAGTATGAGCGGCATTTTGGGATTTTTGGGCCTGATGGGCTTAAGACCCTCCGGCAACGTTCCAGGCCCTCCGGCGCTCCACCCAGGCCCTCCCGCGTTCGTCCAGCCCCTCCGGCGCTAGACCCAGCCACTTCGGCTTTCGACATTCGACCCAGGCGCCATTCCGGCGTTCGATGTTCGACCAAGGCGCACTGGACCCAGCCCCTCCGGCGTTCGGCGCTCTACCCAGGCCCTCCGACGCTCGATCTAGCCCCTCCGTTGCTCAACCAAGGCCCAGCCCCTCTAGCGCTAGACCCAGCCACTCCGGCGTTCGACGTTCGACCTAGGCGCCATTCCGGCGTTCGACGTTCGACCAAGGCTCACTGGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

451

Amino Acids

49.14

Weight (kDa)

8.33

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 36 - 340 5.7e-79 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1137, 1308
AccBSI CCGCTC 2 cut(s) 828, 991
AccI GTMKAC 1 cut(s) 162
AccII CGCG 3 cut(s) 740, 752, 1077
AclI AACGTT 2 cut(s) 192, 1039
AclWI GGATC 2 cut(s) 683, 696
AcoI YGGCCR 3 cut(s) 121, 348, 818
AcsI RAATTY 1 cut(s) 619
AcvI CACGTG 1 cut(s) 418
AcyI GRCGYC 3 cut(s) 908, 1138, 1309
AfaI GTAC 3 cut(s) 524, 722, 941
AfeI AGCGCT 1 cut(s) 1269
AfiI CCNNNNNNNGG 4 cut(s) 315, 771, 827, 1195
AflII CTTAAG 1 cut(s) 1022
AflIII ACRYGT 1 cut(s) 750
AgsI TTSAA 4 cut(s) 205, 477, 584, 646
AjnI CCWGG 4 cut(s) 1043, 1064, 1133, 1207
AluBI AGCT 4 cut(s) 228, 484, 500, 639
AluI AGCT 4 cut(s) 228, 484, 500, 639
Alw26I GTCTC 3 cut(s) 667, 699, 803
AlwI GGATC 2 cut(s) 683, 696
Aor51HI AGCGCT 1 cut(s) 1269
ApeKI GCWGC 2 cut(s) 92, 500
ApoI RAATTY 1 cut(s) 619
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
AspA2I CCTAGG 1 cut(s) 1304
AspS9I GGNCC 9 cut(s) 265, 654, 1010, 1047, 1068, 1176, 1211, 1253, 1347
AsuC2I CCSGG 1 cut(s) 814
AsuHPI GGTGA 4 cut(s) 72, 283, 628, 892
AvaII GGWCC 3 cut(s) 265, 1176, 1347
AvrII CCTAGG 1 cut(s) 1304
BamHI GGATCC 1 cut(s) 688
BanI GGYRCC 2 cut(s) 1137, 1308
BbrPI CACGTG 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 379
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 104, 487
BccI CCATC 2 cut(s) 437, 1010
BceAI ACGGC 5 cut(s) 136, 143, 356, 615, 724
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciT130I CCWGG 4 cut(s) 1045, 1066, 1135, 1209
BciVI GTATCC 1 cut(s) 636
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 814
BcoDI GTCTC 3 cut(s) 667, 699, 803
BfaI CTAG 6 cut(s) 1100, 1229, 1265, 1271, 1305, 1351
BfoI RGCGCY 8 cut(s) 98, 765, 1059, 1100, 1141, 1202, 1271, 1312
BfrI CTTAAG 1 cut(s) 1022
BfuI GTATCC 1 cut(s) 636
BglI GCCNNNNNGGC 7 cut(s) 1018, 1094, 1115, 1146, 1189, 1286, 1317
BisI GCNGC 7 cut(s) 93, 306, 494, 501, 840, 891, 992
BlnI CCTAGG 1 cut(s) 1304
BlsI GCNGC 7 cut(s) 94, 307, 495, 502, 841, 892, 993
Bme1390I CCNGG 5 cut(s) 814, 1045, 1066, 1135, 1209
Bme18I GGWCC 3 cut(s) 265, 1176, 1347
BmgT120I GGNCC 9 cut(s) 265, 654, 1010, 1047, 1068, 1176, 1211, 1253, 1347
BmiI GGNNCC 8 cut(s) 266, 267, 320, 423, 690, 1139, 1178, 1310
BmrFI CCNGG 5 cut(s) 814, 1045, 1066, 1135, 1209
BmsI GCATC 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 379
BpmI CTGGAG 1 cut(s) 322
Bpu10I CCTNAGC 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 814
BsaAI YACGTR 1 cut(s) 418
BsaBI GATNNNNATC 1 cut(s) 693
BsaHI GRCGYC 3 cut(s) 908, 1138, 1309
BsaI GGTCTC 1 cut(s) 803
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 4 cut(s) 315, 771, 827, 1195
Bse118I RCCGGY 1 cut(s) 651
Bse1I ACTGG 3 cut(s) 563, 1178, 1349
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 4 cut(s) 1045, 1066, 1135, 1209
BseGI GGATG 3 cut(s) 39, 165, 429
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 4 cut(s) 315, 771, 827, 1195
BseMII CTCAG 2 cut(s) 238, 448
BseNI ACTGG 3 cut(s) 563, 1178, 1349
BseRI GAGGAG 2 cut(s) 26, 995
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 2 cut(s) 104, 487
BseYI CCCAGC 4 cut(s) 1105, 1179, 1255, 1276
Bsh1236I CGCG 3 cut(s) 740, 752, 1077
Bsh1285I CGRYCG 1 cut(s) 124
BshNI GGYRCC 2 cut(s) 1137, 1308
BsiEI CGRYCG 1 cut(s) 124
BslFI GGGAC 2 cut(s) 251, 919
BslI CCNNNNNNNGG 4 cut(s) 315, 771, 827, 1195
BsmAI GTCTC 3 cut(s) 667, 699, 803
BsmBI CGTCTC 1 cut(s) 699
BsmFI GGGAC 2 cut(s) 251, 919
BsmI GAATGC 2 cut(s) 342, 472
Bso31I GGTCTC 1 cut(s) 803
Bsp143I GATC 5 cut(s) 16, 258, 688, 949, 1225
BspCNI CTCAG 2 cut(s) 237, 447
BspFNI CGCG 3 cut(s) 740, 752, 1077
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 8 cut(s) 266, 267, 320, 423, 690, 1139, 1178, 1310
BspPI GGATC 2 cut(s) 683, 696
BspT107I GGYRCC 2 cut(s) 1137, 1308
BspTI CTTAAG 1 cut(s) 1022
BspTNI GGTCTC 1 cut(s) 803
BsrBI CCGCTC 2 cut(s) 828, 991
BsrFI RCCGGY 1 cut(s) 651
BsrI ACTGG 3 cut(s) 563, 1178, 1349
BssAI RCCGGY 1 cut(s) 651
BssMI GATC 5 cut(s) 16, 258, 688, 949, 1225
BssNI GRCGYC 3 cut(s) 908, 1138, 1309
BssT1I CCWWGG 6 cut(s) 309, 765, 1164, 1249, 1304, 1335
Bst2UI CCWGG 4 cut(s) 1045, 1066, 1135, 1209
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 2 cut(s) 65, 206
BstACI GRCGYC 3 cut(s) 908, 1138, 1309
BstAFI CTTAAG 1 cut(s) 1022
BstBAI YACGTR 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 2 cut(s) 224, 434
BstENI CCTNNNNNAGG 1 cut(s) 769
BstF5I GGATG 3 cut(s) 39, 165, 429
BstFNI CGCG 3 cut(s) 740, 752, 1077
BstH2I RGCGCY 8 cut(s) 98, 765, 1059, 1100, 1141, 1202, 1271, 1312
BstKTI GATC 5 cut(s) 19, 261, 691, 952, 1228
BstMAI GTCTC 3 cut(s) 667, 699, 803
BstMBI GATC 5 cut(s) 16, 258, 688, 949, 1225
BstMCI CGRYCG 1 cut(s) 124
BstNI CCWGG 4 cut(s) 1045, 1066, 1135, 1209
BstSCI CCNGG 5 cut(s) 812, 1043, 1064, 1133, 1207
BstUI CGCG 3 cut(s) 740, 752, 1077
BstV1I GCAGC 2 cut(s) 104, 487
BstV2I GAAGAC 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BstZI CGGCCG 1 cut(s) 121
BsuI GTATCC 1 cut(s) 636
BtgZI GCGATG 2 cut(s) 352, 474
BtsCI GGATG 3 cut(s) 39, 165, 429
BtsIMutI CAGTG 2 cut(s) 1171, 1342
Cac8I GCNNGC 1 cut(s) 498
CciI TCATGA 1 cut(s) 255
Cfr10I RCCGGY 1 cut(s) 651
Cfr13I GGNCC 9 cut(s) 265, 654, 1010, 1047, 1068, 1176, 1211, 1253, 1347
CseI GACGC 5 cut(s) 241, 746, 758, 916, 1228
Csp6I GTAC 3 cut(s) 523, 721, 940
CviAII CATG 2 cut(s) 256, 613
CviQI GTAC 3 cut(s) 523, 721, 940
DdeI CTNAG 2 cut(s) 224, 434
DinI GGCGCC 2 cut(s) 1139, 1310
DpnI GATC 5 cut(s) 18, 260, 690, 951, 1227
DpnII GATC 5 cut(s) 16, 258, 688, 949, 1225
EaeI YGGCCR 3 cut(s) 121, 348, 818
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 65, 206
EarI CTCTTC 2 cut(s) 65, 206
EciI GGCGGA 3 cut(s) 135, 292, 908
EclXI CGGCCG 1 cut(s) 121
Eco130I CCWWGG 6 cut(s) 309, 765, 1164, 1249, 1304, 1335
Eco31I GGTCTC 1 cut(s) 803
Eco47I GGWCC 3 cut(s) 265, 1176, 1347
Eco47III AGCGCT 1 cut(s) 1269
Eco52I CGGCCG 1 cut(s) 121
Eco72I CACGTG 1 cut(s) 418
EcoNI CCTNNNNNAGG 1 cut(s) 769
EcoO109I RGGNCCY 4 cut(s) 265, 1047, 1068, 1211
EcoRII CCWGG 4 cut(s) 1043, 1064, 1133, 1207
EcoT14I CCWWGG 6 cut(s) 309, 765, 1164, 1249, 1304, 1335
EgeI GGCGCC 2 cut(s) 1139, 1310
EheI GGCGCC 2 cut(s) 1139, 1310
ErhI CCWWGG 6 cut(s) 309, 765, 1164, 1249, 1304, 1335
Esp3I CGTCTC 1 cut(s) 699
FaeI CATG 2 cut(s) 259, 616
FaiI YATR 8 cut(s) 27, 185, 257, 614, 660, 675, 867, 987
FaqI GGGAC 2 cut(s) 251, 919
FatI CATG 2 cut(s) 255, 612
FauI CCCGC 5 cut(s) 223, 433, 919, 968, 1082
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 7 cut(s) 93, 306, 494, 501, 840, 891, 992
FokI GGATG 3 cut(s) 26, 152, 416
Fsp4HI GCNGC 7 cut(s) 93, 306, 494, 501, 840, 891, 992
FspBI CTAG 6 cut(s) 1100, 1229, 1265, 1271, 1305, 1351
GluI GCNGC 7 cut(s) 93, 306, 494, 501, 840, 891, 992
GsaI CCCAGC 4 cut(s) 1109, 1183, 1259, 1280
GsuI CTGGAG 1 cut(s) 322
HaeII RGCGCY 8 cut(s) 98, 765, 1059, 1100, 1141, 1202, 1271, 1312
HgaI GACGC 5 cut(s) 241, 746, 758, 916, 1228
Hin1I GRCGYC 3 cut(s) 908, 1138, 1309
Hin1II CATG 2 cut(s) 259, 616
HincII GTYRAC 2 cut(s) 163, 670
HindII GTYRAC 2 cut(s) 163, 670
HinfI GANTC 3 cut(s) 111, 246, 694
HphI GGTGA 4 cut(s) 72, 283, 628, 892
Hpy166II GTNNAC 5 cut(s) 163, 670, 721, 748, 940
Hpy188I TCNGA 4 cut(s) 110, 693, 808, 1218
Hpy188III TCNNGA 3 cut(s) 256, 551, 686
Hpy8I GTNNAC 5 cut(s) 163, 670, 721, 748, 940
Hpy99I CGWCG 8 cut(s) 158, 164, 377, 740, 826, 1222, 1298, 1329
HpyAV CCTTC 5 cut(s) 241, 412, 540, 619, 910
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 5 cut(s) 192, 417, 1039, 1296, 1327
HpyCH4V TGCA 1 cut(s) 454
HpyF3I CTNAG 2 cut(s) 224, 434
HpySE526I ACGT 5 cut(s) 192, 417, 1039, 1296, 1327
Hsp92I GRCGYC 3 cut(s) 908, 1138, 1309
Hsp92II CATG 2 cut(s) 259, 616
KasI GGCGCC 2 cut(s) 1137, 1308
KflI GGGWCCC 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 5 cut(s) 16, 258, 688, 949, 1225
LmnI GCTCC 4 cut(s) 233, 324, 553, 1063
Lsp1109I GCAGC 2 cut(s) 104, 487
LweI GCATC 1 cut(s) 611
MaeI CTAG 6 cut(s) 1100, 1229, 1265, 1271, 1305, 1351
MaeII ACGT 5 cut(s) 192, 417, 1039, 1296, 1327
MaeIII GTNAC 1 cut(s) 593
MalI GATC 5 cut(s) 18, 260, 690, 951, 1227
MbiI CCGCTC 2 cut(s) 828, 991
MboI GATC 5 cut(s) 16, 258, 688, 949, 1225
MboII GAAGA 9 cut(s) 52, 65, 193, 325, 379, 566, 569, 572, 925
MflI RGATCY 1 cut(s) 688
MluCI AATT 3 cut(s) 50, 584, 619
MluI ACGCGT 1 cut(s) 750
Mly113I GGCGCC 2 cut(s) 1138, 1309
MmeI TCCRAC 3 cut(s) 261, 351, 1241
MseI TTAA 1 cut(s) 1023
MslI CAYNNNNRTG 1 cut(s) 24
MspCI CTTAAG 1 cut(s) 1022
MspR9I CCNGG 5 cut(s) 814, 1045, 1066, 1135, 1209
Mva1269I GAATGC 2 cut(s) 342, 472
MvaI CCWGG 4 cut(s) 1045, 1066, 1135, 1209
MvnI CGCG 3 cut(s) 740, 752, 1077
NarI GGCGCC 2 cut(s) 1138, 1309
NciI CCSGG 1 cut(s) 814
NdeII GATC 5 cut(s) 16, 258, 688, 949, 1225
NlaIII CATG 2 cut(s) 259, 616
NlaIV GGNNCC 8 cut(s) 266, 267, 320, 423, 690, 1139, 1178, 1310
NmeAIII GCCGAG 2 cut(s) 149, 515
NmuCI GTSAC 1 cut(s) 593
PagI TCATGA 1 cut(s) 255
PctI GAATGC 2 cut(s) 342, 472
PfeI GAWTC 3 cut(s) 111, 246, 694
PkrI GCNGC 7 cut(s) 94, 307, 495, 502, 841, 892, 993
PluTI GGCGCC 2 cut(s) 1141, 1312
PmaCI CACGTG 1 cut(s) 418
PmlI CACGTG 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 418
PpuMI RGGWCCY 1 cut(s) 265
Psp1406I AACGTT 2 cut(s) 192, 1039
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 4 cut(s) 1043, 1064, 1133, 1207
PspCI CACGTG 1 cut(s) 418
PspFI CCCAGC 4 cut(s) 1105, 1179, 1255, 1276
PspGI CCWGG 4 cut(s) 1043, 1064, 1133, 1207
PspN4I GGNNCC 8 cut(s) 266, 267, 320, 423, 690, 1139, 1178, 1310
PspPI GGNCC 9 cut(s) 265, 654, 1010, 1047, 1068, 1176, 1211, 1253, 1347
PspPPI RGGWCCY 1 cut(s) 265
PsuI RGATCY 1 cut(s) 688
RsaI GTAC 3 cut(s) 524, 722, 941
RsaNI GTAC 3 cut(s) 523, 721, 940
RseI CAYNNNNRTG 1 cut(s) 24
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 1023
SatI GCNGC 7 cut(s) 93, 306, 494, 501, 840, 891, 992
Sau3AI GATC 5 cut(s) 16, 258, 688, 949, 1225
Sau96I GGNCC 9 cut(s) 265, 654, 1010, 1047, 1068, 1176, 1211, 1253, 1347
ScrFI CCNGG 5 cut(s) 814, 1045, 1066, 1135, 1209
SfaNI GCATC 1 cut(s) 611
SfoI GGCGCC 2 cut(s) 1139, 1310
SinI GGWCC 3 cut(s) 265, 1176, 1347
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 1022
SmoI CTYRAG 1 cut(s) 1022
Sse9I AATT 3 cut(s) 50, 584, 619
SspDI GGCGCC 2 cut(s) 1137, 1308
SspMI CTAG 6 cut(s) 1100, 1229, 1265, 1271, 1305, 1351
StyD4I CCNGG 5 cut(s) 812, 1043, 1064, 1133, 1207
StyI CCWWGG 6 cut(s) 309, 765, 1164, 1249, 1304, 1335
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 5 cut(s) 195, 420, 1042, 1299, 1330
TasI AATT 3 cut(s) 50, 584, 619
TatI WGTACW 1 cut(s) 939
TauI GCSGC 5 cut(s) 308, 496, 842, 893, 994
TfiI GAWTC 3 cut(s) 111, 246, 694
Tru1I TTAA 1 cut(s) 1023
Tru9I TTAA 1 cut(s) 1023
TscAI CASTG 2 cut(s) 1178, 1349
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 2 cut(s) 92, 500
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 2 cut(s) 601, 981
TspGWI ACGGA 2 cut(s) 496, 1227
TspRI CASTG 2 cut(s) 1178, 1349
Vha464I CTTAAG 1 cut(s) 1022
VpaK11BI GGWCC 3 cut(s) 265, 1176, 1347
XagI CCTNNNNNAGG 1 cut(s) 769
XapI RAATTY 1 cut(s) 619
XmaJI CCTAGG 1 cut(s) 1304
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 6 cut(s) 1100, 1229, 1265, 1271, 1305, 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.