Prupe.1G252400_v2.0.a1

Glycosyl hydrolases family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009684
Physical Location & Seq
Reverse (-)
26363444 .. 26365487
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G252400.1

Sequence Viewer

Length: 1119 bp
ATGCTCGACATCAAGCTTAATTGGGATCCCAAACGAATTAAAATGCCAAGGGAATTTGATCATCATCATCATCAGCTCCTCCACCCCAAATTCTCGCTCTTCCTTCTCTATCTTCTCTCACCCTCAATAGGTTCAACAGCCGCAGTAGCGGCACCAATCGGAATCTGCTACGGCCGAGTAGCCAACAACCTCCCACCACCGGCCGCCGTCGTCCAAATCCTTCAAACCAACAACATCTCATCCGTCCGTCTCTTCAACACCGACCCCGCCACCCTCCAATCCTTCTCATCCACCCCAACAATCCGCCTCAGTATTGGCGTCCCCAACGAGCTCCTCCCCACCCTCGCCTCCGCCACCGTCCCTGCTGCCCTCGCCTGGCTCCAGTCCAACATCCTAGCCCACATCCCCCCCAACCAAATACAATACCTCGCCGTCGGCAACGAGGTCTTCCTCAAAGACCCTTACTACATCCCCCACGTCCTTCCCGCCATTCTCAACCTCCACCAAGCCCTCCAAACCCTAGGCCTCTCCCAAACCATCAAGCTCTCTTCCCCGCAAGCCGCCTCCGTACTCTCCGCCTCCTACCCTCCCTCCTCCGCCTCCTTCGACCCCTCCCTCCAACCCTCTCTCCTTCCCCTCCTCCACTTCCTCCGCGACACAAACTCTCCCTTCATGGTCAACTCCTACCCCTACTTCAGCTACTTAAGCAGCCATCCCTTTGTCTCCCTCGATTACGCTCTCTTTCGAGCTTCCGGCGGCGGTGAGGTGGTTCTGGACGGTGGGTTGGCGTATAGTAATCTCTTCGACGCGAGTGTGGATGCGTTTGTGAGTGCGATGGAGAGGGAGGGAGTTGCCGGCGTGGCTGTGGTGGTTTCGGAGACAGGTTGGCCGACAAGTGGAGGGGAGGCGGCGAGCGTTGAAAATGCACTGGCGTATAATGCTGAGGTGGTGAGGCGGGCGGTGGAAGGGGTTGGGACGCCGAGGAGGCCCGGGGTGGGCGTGGAGGTTTTCTTGTTTGACCTGTTTGACGAGAATGAGAAAGGAGGTGAGGAGTACGAGAAGCATTTTGGAATTTTTGGGCCTGATGGGCTTAGAACTTACGGGCTTCGTTTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

373

Amino Acids

40.29

Weight (kDa)

5.63

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AccII CGCG 2 cut(s) 654, 809
AclWI GGATC 2 cut(s) 20, 33
AcoI YGGCCR 3 cut(s) 172, 201, 887
AcsI RAATTY 3 cut(s) 53, 89, 1071
AcuI CTGAAG 1 cut(s) 679
AcyI GRCGYC 2 cut(s) 318, 977
AfaI GTAC 2 cut(s) 570, 1055
AfiI CCNNNNNNNGG 5 cut(s) 128, 199, 375, 896, 995
AflII CTTAAG 1 cut(s) 703
AgsI TTSAA 4 cut(s) 135, 224, 256, 920
AjiI CACGTC 1 cut(s) 478
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 6 cut(s) 16, 76, 331, 544, 699, 749
AluI AGCT 6 cut(s) 16, 76, 331, 544, 699, 749
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 3 cut(s) 254, 727, 872
AlwI GGATC 2 cut(s) 20, 33
Ama87I CYCGRG 1 cut(s) 989
AoxI GGCC 6 cut(s) 172, 201, 523, 887, 986, 1079
ApeKI GCWGC 2 cut(s) 365, 708
ApoI RAATTY 3 cut(s) 53, 89, 1071
AspA2I CCTAGG 1 cut(s) 520
AspS9I GGNCC 2 cut(s) 987, 1079
AsuC2I CCSGG 2 cut(s) 990, 991
AsuHPI GGTGA 4 cut(s) 111, 773, 961, 1058
AvaI CYCGRG 1 cut(s) 989
AvrII CCTAGG 1 cut(s) 520
BamHI GGATCC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 439
Bbv12I GWGCWC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 942
BbvI GCAGC 2 cut(s) 352, 720
BccI CCATC 4 cut(s) 545, 720, 829, 1079
BceAI ACGGC 3 cut(s) 187, 191, 416
BciT130I CCWGG 1 cut(s) 376
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 2 cut(s) 990, 991
BcoDI GTCTC 3 cut(s) 254, 727, 872
BfaI CTAG 2 cut(s) 395, 521
BfrI CTTAAG 1 cut(s) 703
BglI GCCNNNNNGGC 3 cut(s) 860, 985, 1087
BisI GCNGC 8 cut(s) 141, 150, 204, 366, 561, 709, 757, 909
BlnI CCTAGG 1 cut(s) 520
BlsI GCNGC 8 cut(s) 142, 151, 205, 367, 562, 710, 758, 910
Bme1390I CCNGG 3 cut(s) 376, 990, 991
BmeT110I CYCGRG 1 cut(s) 989
BmgBI CACGTC 1 cut(s) 478
BmgT120I GGNCC 2 cut(s) 987, 1079
BmiI GGNNCC 3 cut(s) 27, 153, 380
BmrFI CCNGG 3 cut(s) 376, 990, 991
BmsI GCATC 1 cut(s) 808
BpiI GAAGAC 1 cut(s) 439
BpmI CTGGAG 1 cut(s) 365
Bpu10I CCTNAGC 1 cut(s) 942
BpuMI CCSGG 2 cut(s) 990, 991
BsaBI GATNNNNATC 1 cut(s) 63
BsaHI GRCGYC 2 cut(s) 318, 977
BsaJI CCNNGG 5 cut(s) 47, 520, 980, 989, 990
BsaXI ACNNNNNCTCC 6 cut(s) 575, 605, 612, 642, 649, 679
Bsc4I CCNNNNNNNGG 5 cut(s) 128, 199, 375, 896, 995
Bse118I RCCGGY 2 cut(s) 199, 854
Bse1I ACTGG 2 cut(s) 382, 933
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 5 cut(s) 47, 520, 980, 989, 990
BseGI GGATG 7 cut(s) 239, 287, 390, 402, 468, 712, 823
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 5 cut(s) 128, 199, 375, 896, 995
BseMII CTCAG 2 cut(s) 322, 933
BseNI ACTGG 2 cut(s) 382, 933
BseRI GAGGAG 6 cut(s) 68, 323, 583, 629, 997, 1064
BseX3I CGGCCG 2 cut(s) 172, 201
BseXI GCAGC 2 cut(s) 352, 720
Bsh1236I CGCG 2 cut(s) 654, 809
Bsh1285I CGRYCG 2 cut(s) 175, 204
BshFI GGCC 6 cut(s) 174, 203, 525, 889, 988, 1081
BshNI GGYRCC 1 cut(s) 151
BsiEI CGRYCG 2 cut(s) 175, 204
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 989
BsiSI CCGG 4 cut(s) 200, 753, 855, 990
BslFI GGGAC 3 cut(s) 305, 344, 988
BslI CCNNNNNNNGG 5 cut(s) 128, 199, 375, 896, 995
BsmAI GTCTC 3 cut(s) 254, 727, 872
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 3 cut(s) 305, 344, 988
BsnI GGCC 6 cut(s) 174, 203, 525, 889, 988, 1081
BsoBI CYCGRG 1 cut(s) 989
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 2 cut(s) 25, 58
BspANI GGCC 6 cut(s) 174, 203, 525, 889, 988, 1081
BspCNI CTCAG 2 cut(s) 321, 934
BspFNI CGCG 2 cut(s) 654, 809
BspLI GGNNCC 3 cut(s) 27, 153, 380
BspPI GGATC 2 cut(s) 20, 33
BspQI GCTCTTC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 151
BspTI CTTAAG 1 cut(s) 703
BsrFI RCCGGY 2 cut(s) 199, 854
BsrI ACTGG 2 cut(s) 382, 933
BssAI RCCGGY 2 cut(s) 199, 854
BssECI CCNNGG 5 cut(s) 47, 520, 980, 989, 990
BssMI GATC 2 cut(s) 25, 58
BssNI GRCGYC 2 cut(s) 318, 977
BssT1I CCWWGG 2 cut(s) 47, 520
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 358, 779
Bst6I CTCTTC 4 cut(s) 104, 257, 553, 806
BstACI GRCGYC 2 cut(s) 318, 977
BstAFI CTTAAG 1 cut(s) 703
BstC8I GCNNGC 4 cut(s) 558, 856, 913, 957
BstDEI CTNAG 3 cut(s) 308, 942, 1091
BstF5I GGATG 7 cut(s) 239, 287, 390, 402, 468, 712, 823
BstFNI CGCG 2 cut(s) 654, 809
BstKTI GATC 2 cut(s) 28, 61
BstMAI GTCTC 3 cut(s) 254, 727, 872
BstMBI GATC 2 cut(s) 25, 58
BstMCI CGRYCG 2 cut(s) 175, 204
BstMWI GCNNNNNNNGC 8 cut(s) 146, 149, 371, 705, 860, 938, 985, 1087
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 374, 988, 989
BstUI CGCG 2 cut(s) 654, 809
BstV1I GCAGC 2 cut(s) 352, 720
BstV2I GAAGAC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BstZI CGGCCG 2 cut(s) 172, 201
BsuRI GGCC 6 cut(s) 174, 203, 525, 889, 988, 1081
BtgZI GCGATG 1 cut(s) 848
BtrI CACGTC 1 cut(s) 478
BtsCI GGATG 7 cut(s) 239, 287, 390, 402, 468, 712, 823
BtsIMutI CAGTG 1 cut(s) 926
Cac8I GCNNGC 4 cut(s) 558, 856, 913, 957
Cfr10I RCCGGY 2 cut(s) 199, 854
Cfr13I GGNCC 2 cut(s) 987, 1079
Cfr9I CCCGGG 1 cut(s) 989
CseI GACGC 3 cut(s) 307, 815, 985
Csp6I GTAC 2 cut(s) 569, 1054
CviAII CATG 1 cut(s) 673
CviQI GTAC 2 cut(s) 569, 1054
DdeI CTNAG 3 cut(s) 308, 942, 1091
DpnI GATC 2 cut(s) 27, 60
DpnII GATC 2 cut(s) 25, 58
EaeI YGGCCR 3 cut(s) 172, 201, 887
EagI CGGCCG 2 cut(s) 172, 201
Eam1104I CTCTTC 4 cut(s) 104, 257, 553, 806
EarI CTCTTC 4 cut(s) 104, 257, 553, 806
EciI GGCGGA 4 cut(s) 293, 340, 565, 586
Ecl136II GAGCTC 1 cut(s) 331
EclXI CGGCCG 2 cut(s) 172, 201
Eco130I CCWWGG 2 cut(s) 47, 520
Eco147I AGGCCT 1 cut(s) 525
Eco24I GRGCYC 1 cut(s) 333
Eco52I CGGCCG 2 cut(s) 172, 201
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 679
Eco88I CYCGRG 1 cut(s) 989
EcoICRI GAGCTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 374
EcoT14I CCWWGG 2 cut(s) 47, 520
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 2 cut(s) 47, 520
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 1 cut(s) 676
FaiI YATR 3 cut(s) 674, 792, 936
FaqI GGGAC 3 cut(s) 305, 344, 988
FatI CATG 1 cut(s) 672
FauI CCCGC 4 cut(s) 274, 493, 561, 948
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 8 cut(s) 141, 150, 204, 366, 561, 709, 757, 909
FokI GGATG 7 cut(s) 226, 274, 377, 389, 455, 699, 830
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 8 cut(s) 141, 150, 204, 366, 561, 709, 757, 909
FspBI CTAG 2 cut(s) 395, 521
GluI GCNGC 8 cut(s) 141, 150, 204, 366, 561, 709, 757, 909
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 6 cut(s) 174, 203, 525, 889, 988, 1081
HapII CCGG 4 cut(s) 200, 753, 855, 990
HgaI GACGC 3 cut(s) 307, 815, 985
Hin1I GRCGYC 2 cut(s) 318, 977
Hin1II CATG 1 cut(s) 676
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 1 cut(s) 162
HpaII CCGG 4 cut(s) 200, 753, 855, 990
HphI GGTGA 4 cut(s) 111, 773, 961, 1058
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 2 cut(s) 161, 877
Hpy188III TCNNGA 1 cut(s) 773
Hpy8I GTNNAC 1 cut(s) 679
Hpy99I CGWCG 3 cut(s) 212, 437, 809
HpyAV CCTTC 8 cut(s) 113, 230, 292, 491, 613, 641, 679, 959
HpyCH4III ACNGT 2 cut(s) 358, 779
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 1 cut(s) 926
HpyF10VI GCNNNNNNNGC 8 cut(s) 146, 149, 371, 705, 860, 938, 985, 1087
HpyF3I CTNAG 3 cut(s) 308, 942, 1091
HpySE526I ACGT 1 cut(s) 477
Hsp92I GRCGYC 2 cut(s) 318, 977
Hsp92II CATG 1 cut(s) 676
KroI GCCGGC 1 cut(s) 854
KroNI GCCGGC 1 cut(s) 856
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 25, 58
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 3 cut(s) 81, 336, 384
Lsp1109I GCAGC 2 cut(s) 352, 720
LweI GCATC 1 cut(s) 808
MaeI CTAG 2 cut(s) 395, 521
MaeII ACGT 1 cut(s) 477
MalI GATC 2 cut(s) 27, 60
MboI GATC 2 cut(s) 25, 58
MboII GAAGA 6 cut(s) 91, 104, 244, 439, 540, 793
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 5 cut(s) 19, 36, 53, 89, 1071
MmeI TCCRAC 2 cut(s) 411, 643
MroNI GCCGGC 1 cut(s) 854
MseI TTAA 4 cut(s) 18, 39, 704, 1113
MspCI CTTAAG 1 cut(s) 703
MspI CCGG 4 cut(s) 200, 753, 855, 990
MspR9I CCNGG 3 cut(s) 376, 990, 991
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 2 cut(s) 654, 809
MwoI GCNNNNNNNGC 8 cut(s) 146, 149, 371, 705, 860, 938, 985, 1087
NaeI GCCGGC 1 cut(s) 856
NciI CCSGG 2 cut(s) 990, 991
NdeII GATC 2 cut(s) 25, 58
NgoMIV GCCGGC 1 cut(s) 854
NlaIII CATG 1 cut(s) 676
NlaIV GGNNCC 3 cut(s) 27, 153, 380
NmeAIII GCCGAG 2 cut(s) 200, 1005
PceI AGGCCT 1 cut(s) 525
PciSI GCTCTTC 1 cut(s) 104
PdiI GCCGGC 1 cut(s) 856
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 8 cut(s) 142, 151, 205, 367, 562, 710, 758, 910
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 3 cut(s) 27, 153, 380
PspPI GGNCC 2 cut(s) 987, 1079
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 2 cut(s) 570, 1055
RsaNI GTAC 2 cut(s) 569, 1054
SacI GAGCTC 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 4 cut(s) 18, 39, 704, 1113
SatI GCNGC 8 cut(s) 141, 150, 204, 366, 561, 709, 757, 909
Sau3AI GATC 2 cut(s) 25, 58
Sau96I GGNCC 2 cut(s) 987, 1079
ScrFI CCNGG 3 cut(s) 376, 990, 991
SduI GDGCHC 1 cut(s) 333
SfaNI GCATC 1 cut(s) 808
SmaI CCCGGG 1 cut(s) 991
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
Sse9I AATT 5 cut(s) 19, 36, 53, 89, 1071
SseBI AGGCCT 1 cut(s) 525
SspMI CTAG 2 cut(s) 395, 521
SstI GAGCTC 1 cut(s) 333
StuI AGGCCT 1 cut(s) 525
StyD4I CCNGG 3 cut(s) 374, 988, 989
StyI CCWWGG 2 cut(s) 47, 520
TaaI ACNGT 2 cut(s) 358, 779
TaiI ACGT 1 cut(s) 480
TaqI TCGA 5 cut(s) 6, 606, 729, 745, 804
TasI AATT 5 cut(s) 19, 36, 53, 89, 1071
TauI GCSGC 6 cut(s) 143, 152, 206, 563, 759, 911
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 4 cut(s) 18, 39, 704, 1113
Tru9I TTAA 4 cut(s) 18, 39, 704, 1113
TscAI CASTG 1 cut(s) 933
TseI GCWGC 2 cut(s) 365, 708
TspDTI ATGAA 1 cut(s) 661
TspGWI ACGGA 3 cut(s) 232, 236, 556
TspMI CCCGGG 1 cut(s) 989
TspRI CASTG 1 cut(s) 933
Vha464I CTTAAG 1 cut(s) 703
XapI RAATTY 3 cut(s) 53, 89, 1071
XmaI CCCGGG 1 cut(s) 989
XmaJI CCTAGG 1 cut(s) 520
XspI CTAG 2 cut(s) 395, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.