Rroxscaffold_5G00384280

Glycosyl hydrolases family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009684
Physical Location & Seq
Reverse (-)
63741060 .. 63742109
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384280.1

Sequence Viewer

Length: 1050 bp
ATGCCAAATAACTTTGATCATCACTATGACCACCTCCTCATCCTCTCTCAATTCTCACTCTTCTTGCTCAATCTTCTCTCACCCTCGTCCGCAGCGCTGCCGCCAATCGGAATCTGCTACGGCCGAGTAGCCAACAACCTCCCTCCTCCCACCGTCGCCGTCGACATCCTCAAAGCCAACAACATAAAAAACGTCCGCCTCTTCAATGCCGACCCCGCCACTCTCAGCTCCTTCTCCAACACCGGAATCAGCGTCATGATCGGGGTCCCCAACGAAATCCTCCCCACCCTCACCACCGCCTCCGCCGCCACGGAGTGGCTCCAATCCGACATCTTCTCCAGCATTCCGGCCAACCAAGTCCGCTACATCGCCGTCGGCAACGAGGTCTTCCTCAAAGACCCCTTCTACACTCCCCACGTGGTTCCCGCCATTCTCAGCCTCCACCAAGCCCTCCAAACCCTAAATCTCTCGCATTCAATAAAGCTCTCATCGCCGCAAGCCGCCTCCGTGCTATCAATCTCCTACCCTCCTTCCTCGGCCTCGTTCGCTCCCGACCTCAAACCAGTTCTATTTCTTCTTCTTCAATTCTTGCGTGACACGGCATCTCCCTTCATGGTGAATTTGTATCCCTATTTCAGCTACTTGAACAACCGGCCCTATGTCTCTGTTGACTATGCTTTGTTTCGGGATCCGAACCCAGTGCAAGACGGCGCGTTGGTGTACGACAACCTGTTCGACGCGAGTGTGGACGCGTTTGTGAGCGCTTTGGAGAGGGAGGGGTTTGGGGGAGTTGAGGTGGTGGTTTCGGAGACCGGGTGGCCGACGAGCGGTGGGGAAGCGGCGAGTGTGGAGAATGCGCTGGCGTATAATAGAGAGGTGGTGAGGCGAGCGGCGGAGGGGGTTGGGACGCCGAAGAAGGCGGGGGAGGGTGTGGAGGTGTACTTGTTTGATCTGTTTGATGAGAATGAAAAAGGCGGGGAGGAGTATGAGCGGCATTTCGGGATTTTTGGGCCTGATGGGCTTAAGGCATATGACCTTAGTTTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

349

Amino Acids

38.04

Weight (kDa)

4.73

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 36 - 348 2.7e-82 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 315
AccBSI CCGCTC 3 cut(s) 828, 890, 991
AccI GTMKAC 1 cut(s) 162
AccII CGCG 3 cut(s) 713, 740, 752
AclWI GGATC 2 cut(s) 683, 696
AcoI YGGCCR 3 cut(s) 121, 348, 818
AcsI RAATTY 1 cut(s) 619
AcvI CACGTG 1 cut(s) 418
AcyI GRCGYC 1 cut(s) 908
AdeI CACNNNGTG 1 cut(s) 315
AfaI GTAC 2 cut(s) 722, 941
AfeI AGCGCT 2 cut(s) 96, 763
AfiI CCNNNNNNNGG 3 cut(s) 107, 315, 827
AflII CTTAAG 1 cut(s) 1022
AflIII ACRYGT 1 cut(s) 750
AgsI TTSAA 5 cut(s) 205, 477, 584, 646, 1045
AluBI AGCT 3 cut(s) 228, 484, 639
AluI AGCT 3 cut(s) 228, 484, 639
Alw26I GTCTC 2 cut(s) 667, 803
AlwI GGATC 2 cut(s) 683, 696
Aor51HI AGCGCT 2 cut(s) 96, 763
AoxI GGCC 6 cut(s) 121, 348, 537, 653, 818, 1010
ApeKI GCWGC 2 cut(s) 92, 97
ApoI RAATTY 1 cut(s) 619
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
AspLEI GCGC 4 cut(s) 97, 713, 764, 859
AspS9I GGNCC 3 cut(s) 265, 654, 1010
AsuC2I CCSGG 1 cut(s) 814
AsuHPI GGTGA 4 cut(s) 72, 283, 628, 892
AvaII GGWCC 1 cut(s) 265
BamHI GGATCC 1 cut(s) 688
BbrPI CACGTG 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 379
BbvI GCAGC 2 cut(s) 84, 104
BccI CCATC 1 cut(s) 1010
BceAI ACGGC 5 cut(s) 136, 143, 356, 615, 724
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciVI GTATCC 1 cut(s) 636
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 814
BcoDI GTCTC 2 cut(s) 667, 803
BfoI RGCGCY 2 cut(s) 98, 765
BfrI CTTAAG 1 cut(s) 1022
BfuI GTATCC 1 cut(s) 636
BglI GCCNNNNNGGC 1 cut(s) 1018
BisI GCNGC 9 cut(s) 93, 98, 101, 306, 494, 501, 840, 891, 992
BlsI GCNGC 9 cut(s) 94, 99, 102, 307, 495, 502, 841, 892, 993
Bme1390I CCNGG 1 cut(s) 814
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 3 cut(s) 265, 654, 1010
BmiI GGNNCC 5 cut(s) 266, 267, 320, 423, 690
BmrFI CCNGG 1 cut(s) 814
BmrI ACTGGG 1 cut(s) 692
BmsI GCATC 1 cut(s) 611
BmuI ACTGGG 1 cut(s) 692
BpiI GAAGAC 1 cut(s) 379
BpmI CTGGAG 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 814
BsaAI YACGTR 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 908
BsaI GGTCTC 1 cut(s) 803
BsaJI CCNNGG 2 cut(s) 309, 534
BsaWI WCCGGW 1 cut(s) 242
BsaXI ACNNNNNCTCC 8 cut(s) 320, 350, 589, 619, 780, 800, 810, 830
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 315, 827
Bse118I RCCGGY 1 cut(s) 651
Bse1I ACTGG 2 cut(s) 563, 698
BseDI CCNNGG 2 cut(s) 309, 534
BseGI GGATG 2 cut(s) 39, 165
BseLI CCNNNNNNNGG 3 cut(s) 107, 315, 827
BseMII CTCAG 2 cut(s) 238, 448
BseNI ACTGG 2 cut(s) 563, 698
BseRI GAGGAG 3 cut(s) 26, 135, 995
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 2 cut(s) 84, 104
Bsh1236I CGCG 3 cut(s) 713, 740, 752
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 6 cut(s) 123, 350, 539, 655, 820, 1012
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 4 cut(s) 243, 347, 652, 813
BslFI GGGAC 2 cut(s) 251, 919
BslI CCNNNNNNNGG 3 cut(s) 107, 315, 827
BsmAI GTCTC 2 cut(s) 667, 803
BsmFI GGGAC 2 cut(s) 251, 919
BsmI GAATGC 3 cut(s) 342, 472, 859
BsnI GGCC 6 cut(s) 123, 350, 539, 655, 820, 1012
Bso31I GGTCTC 1 cut(s) 803
Bsp143I GATC 4 cut(s) 16, 258, 688, 949
BspANI GGCC 6 cut(s) 123, 350, 539, 655, 820, 1012
BspCNI CTCAG 2 cut(s) 237, 447
BspFNI CGCG 3 cut(s) 713, 740, 752
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 5 cut(s) 266, 267, 320, 423, 690
BspPI GGATC 2 cut(s) 683, 696
BspTI CTTAAG 1 cut(s) 1022
BspTNI GGTCTC 1 cut(s) 803
BsrBI CCGCTC 3 cut(s) 828, 890, 991
BsrFI RCCGGY 1 cut(s) 651
BsrI ACTGG 2 cut(s) 563, 698
BssAI RCCGGY 1 cut(s) 651
BssECI CCNNGG 2 cut(s) 309, 534
BssMI GATC 4 cut(s) 16, 258, 688, 949
BssNI GRCGYC 1 cut(s) 908
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 2 cut(s) 65, 206
BstACI GRCGYC 1 cut(s) 908
BstAFI CTTAAG 1 cut(s) 1022
BstBAI YACGTR 1 cut(s) 418
BstC8I GCNNGC 3 cut(s) 498, 861, 888
BstDEI CTNAG 3 cut(s) 224, 434, 1037
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 2 cut(s) 39, 165
BstFNI CGCG 3 cut(s) 713, 740, 752
BstH2I RGCGCY 2 cut(s) 98, 765
BstHHI GCGC 4 cut(s) 97, 713, 764, 859
BstKTI GATC 4 cut(s) 19, 261, 691, 952
BstMAI GTCTC 2 cut(s) 667, 803
BstMBI GATC 4 cut(s) 16, 258, 688, 949
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 5 cut(s) 215, 305, 490, 545, 1018
BstSCI CCNGG 1 cut(s) 812
BstUI CGCG 3 cut(s) 713, 740, 752
BstV1I GCAGC 2 cut(s) 84, 104
BstV2I GAAGAC 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BstZI CGGCCG 1 cut(s) 121
BsuI GTATCC 1 cut(s) 636
BsuRI GGCC 6 cut(s) 123, 350, 539, 655, 820, 1012
BtgI CCRYGG 1 cut(s) 309
BtgZI GCGATG 2 cut(s) 352, 474
BtsCI GGATG 2 cut(s) 39, 165
BtsIMutI CAGTG 1 cut(s) 705
Cac8I GCNNGC 3 cut(s) 498, 861, 888
CciI TCATGA 1 cut(s) 255
CfoI GCGC 4 cut(s) 97, 713, 764, 859
Cfr10I RCCGGY 1 cut(s) 651
Cfr13I GGNCC 3 cut(s) 265, 654, 1010
CseI GACGC 4 cut(s) 241, 746, 758, 916
Csp6I GTAC 2 cut(s) 721, 940
CviAII CATG 2 cut(s) 256, 613
CviQI GTAC 2 cut(s) 721, 940
DdeI CTNAG 3 cut(s) 224, 434, 1037
DpnI GATC 4 cut(s) 18, 260, 690, 951
DpnII GATC 4 cut(s) 16, 258, 688, 949
DraIII CACNNNGTG 1 cut(s) 315
EaeI YGGCCR 3 cut(s) 121, 348, 818
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 65, 206
EarI CTCTTC 2 cut(s) 65, 206
EciI GGCGGA 3 cut(s) 185, 292, 908
EclXI CGGCCG 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 803
Eco47I GGWCC 1 cut(s) 265
Eco47III AGCGCT 2 cut(s) 96, 763
Eco52I CGGCCG 1 cut(s) 121
Eco72I CACGTG 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 265
FaeI CATG 2 cut(s) 259, 616
FaqI GGGAC 2 cut(s) 251, 919
FatI CATG 2 cut(s) 255, 612
FauI CCCGC 4 cut(s) 223, 433, 913, 968
FauNDI CATATG 1 cut(s) 1030
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 9 cut(s) 93, 98, 101, 306, 494, 501, 840, 891, 992
FokI GGATG 2 cut(s) 26, 152
Fsp4HI GCNGC 9 cut(s) 93, 98, 101, 306, 494, 501, 840, 891, 992
GlaI GCGC 4 cut(s) 96, 712, 763, 858
GluI GCNGC 9 cut(s) 93, 98, 101, 306, 494, 501, 840, 891, 992
GsuI CTGGAG 1 cut(s) 322
HaeII RGCGCY 2 cut(s) 98, 765
HaeIII GGCC 6 cut(s) 123, 350, 539, 655, 820, 1012
HapII CCGG 4 cut(s) 243, 347, 652, 813
HgaI GACGC 4 cut(s) 241, 746, 758, 916
HhaI GCGC 4 cut(s) 97, 713, 764, 859
Hin1I GRCGYC 1 cut(s) 908
Hin1II CATG 2 cut(s) 259, 616
Hin6I GCGC 4 cut(s) 95, 711, 762, 857
HinP1I GCGC 4 cut(s) 95, 711, 762, 857
HincII GTYRAC 2 cut(s) 163, 670
HindII GTYRAC 2 cut(s) 163, 670
HinfI GANTC 2 cut(s) 111, 246
HpaII CCGG 4 cut(s) 243, 347, 652, 813
HphI GGTGA 4 cut(s) 72, 283, 628, 892
Hpy166II GTNNAC 5 cut(s) 163, 670, 721, 748, 940
Hpy188I TCNGA 4 cut(s) 110, 328, 693, 808
Hpy188III TCNNGA 4 cut(s) 256, 551, 686, 1000
Hpy8I GTNNAC 5 cut(s) 163, 670, 721, 748, 940
Hpy99I CGWCG 5 cut(s) 158, 164, 377, 740, 826
HpyAV CCTTC 5 cut(s) 241, 412, 540, 619, 910
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 2 cut(s) 192, 417
HpyCH4V TGCA 1 cut(s) 703
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 305, 490, 545, 1018
HpyF3I CTNAG 3 cut(s) 224, 434, 1037
HpySE526I ACGT 2 cut(s) 192, 417
Hsp92I GRCGYC 1 cut(s) 908
Hsp92II CATG 2 cut(s) 259, 616
HspAI GCGC 4 cut(s) 95, 711, 762, 857
KflI GGGWCCC 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 4 cut(s) 16, 258, 688, 949
LmnI GCTCC 3 cut(s) 233, 324, 553
Lsp1109I GCAGC 2 cut(s) 84, 104
LweI GCATC 1 cut(s) 611
MaeII ACGT 2 cut(s) 192, 417
MaeIII GTNAC 1 cut(s) 593
MalI GATC 4 cut(s) 18, 260, 690, 951
MbiI CCGCTC 3 cut(s) 828, 890, 991
MboI GATC 4 cut(s) 16, 258, 688, 949
MboII GAAGA 9 cut(s) 52, 65, 193, 325, 379, 566, 569, 572, 925
MflI RGATCY 1 cut(s) 688
MluCI AATT 3 cut(s) 50, 584, 619
MluI ACGCGT 1 cut(s) 750
MmeI TCCRAC 2 cut(s) 261, 351
MseI TTAA 1 cut(s) 1023
MslI CAYNNNNRTG 1 cut(s) 24
MspCI CTTAAG 1 cut(s) 1022
MspI CCGG 4 cut(s) 243, 347, 652, 813
MspR9I CCNGG 1 cut(s) 814
Mva1269I GAATGC 3 cut(s) 342, 472, 859
MvnI CGCG 3 cut(s) 713, 740, 752
MwoI GCNNNNNNNGC 5 cut(s) 215, 305, 490, 545, 1018
NciI CCSGG 1 cut(s) 814
NdeI CATATG 1 cut(s) 1030
NdeII GATC 4 cut(s) 16, 258, 688, 949
NlaIII CATG 2 cut(s) 259, 616
NlaIV GGNNCC 5 cut(s) 266, 267, 320, 423, 690
NmeAIII GCCGAG 2 cut(s) 149, 515
NmuCI GTSAC 1 cut(s) 593
PagI TCATGA 1 cut(s) 255
PctI GAATGC 3 cut(s) 342, 472, 859
PfeI GAWTC 2 cut(s) 111, 246
PflMI CCANNNNNTGG 1 cut(s) 315
PkrI GCNGC 9 cut(s) 94, 99, 102, 307, 495, 502, 841, 892, 993
PmaCI CACGTG 1 cut(s) 418
PmlI CACGTG 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 418
PpuMI RGGWCCY 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 265
PspCI CACGTG 1 cut(s) 418
PspN4I GGNNCC 5 cut(s) 266, 267, 320, 423, 690
PspPI GGNCC 3 cut(s) 265, 654, 1010
PspPPI RGGWCCY 1 cut(s) 265
PsuI RGATCY 1 cut(s) 688
RsaI GTAC 2 cut(s) 722, 941
RsaNI GTAC 2 cut(s) 721, 940
RseI CAYNNNNRTG 1 cut(s) 24
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 1023
SatI GCNGC 9 cut(s) 93, 98, 101, 306, 494, 501, 840, 891, 992
Sau3AI GATC 4 cut(s) 16, 258, 688, 949
Sau96I GGNCC 3 cut(s) 265, 654, 1010
ScrFI CCNGG 1 cut(s) 814
SfaNI GCATC 1 cut(s) 611
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 1022
SmoI CTYRAG 1 cut(s) 1022
Sse9I AATT 3 cut(s) 50, 584, 619
StyD4I CCNGG 1 cut(s) 812
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 2 cut(s) 195, 420
TaqI TCGA 2 cut(s) 162, 735
TasI AATT 3 cut(s) 50, 584, 619
TatI WGTACW 1 cut(s) 939
TauI GCSGC 7 cut(s) 103, 308, 496, 503, 842, 893, 994
TfiI GAWTC 2 cut(s) 111, 246
Tru1I TTAA 1 cut(s) 1023
Tru9I TTAA 1 cut(s) 1023
TscAI CASTG 1 cut(s) 705
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 2 cut(s) 92, 97
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 2 cut(s) 601, 981
TspGWI ACGGA 2 cut(s) 326, 496
TspRI CASTG 1 cut(s) 705
Van91I CCANNNNNTGG 1 cut(s) 315
Vha464I CTTAAG 1 cut(s) 1022
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 1 cut(s) 619
XmiI GTMKAC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.