Rh4DG413100

Glycosyl hydrolases family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0009684
Physical Location & Seq
Reverse (-)
62412813 .. 62413862
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG413100.1

Sequence Viewer

Length: 1050 bp
ATGCCAAAGAACTTTGATCATCACTATGACCACCTCCTCATCCTCTCTCAATTCTCACTCCTCTTGCTCAATCTTCTCTCACCCTCGTCCGCAGCGCCGCCGCCAATCGGAATCTGCTACGGCCGAGTAGCCAACAACCTCCCTCCGCTCACAGTCGCCGTCGACATCCTCAAAGCCAACAACATAAAAAACGTCCGCCTCTTCAATGCCAACCCCGCCACTCTCAGCTCCTTCTCCAACTCCGGAATCAGCGTCATGATTGGGGTCCCCAACGAAATCCTCCCCACCCTCACCACCTCCTCCGCCGCAGTGGGGTGGCTTCAATCCGACATCTTCTCCAGCATTCCGGCCAACCAAGTCCGCTACATCGCCGTCGGCAACGAGGTCTTCCTCAAAGACCCCTTCTACACTCCCCACGTGGTTCCCGCCATCCTCAGCCTCCACCAAGCCCTCCAAACCCTAAATCTCTCGCATTCAATAAAGCTCTCATCGCCGCAAGCCGCCTCCGTGCTATCAATCTCCTACCCTCCTTCCTCGGCCTCGTTCGCTCCCGACCTCAAACCAGTTCTATTTCTTCTTCTTCAATTCTTGCGTGACACGGCATCTCCCTTCATGGTGAATTTGTATCCCTATTTCAGCTACTTAAACAACCGGCCCTATGTCTCTGTTGACTATGCTTTGTTTCGGGATCCGAACCCCGTGCAAGACGGCGCGTTGGTGTACGACAACCTGTTCGACGCGAGTGTGGACGCGTTTGTGAGCGCTTTGGAGAGGGAGGGGTTTGGGGGAGTTGAGGTGGTGGTTTCGGAGACCGGGTGGCCGACGAGCGGTGGGGAAGCGGCGAGTGTGGAGAACGCGCTGGCTTATAATAGAGAGGTGGTGAGGCGAGCGGCGGAGGGGGTTGGGACGCCGAAGAAGGCGGGGGAGGGAGTGGAGGTGTACTTGTTTGATCTGTTTGATGAGAATGAAAAAGGCGGGGAGGAGTATGAGCGGCATTTTGGGATTTTTGGGCCTGATGGGCTTAAGGCATATGACCTTGGTTTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

349

Amino Acids

37.92

Weight (kDa)

4.9

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 36 - 348 3.3e-81 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 867
AccBSI CCGCTC 4 cut(s) 148, 828, 890, 991
AccI GTMKAC 1 cut(s) 162
AccII CGCG 4 cut(s) 713, 740, 752, 857
AccIII TCCGGA 1 cut(s) 242
AclWI GGATC 2 cut(s) 683, 696
AcoI YGGCCR 3 cut(s) 121, 348, 818
AcsI RAATTY 1 cut(s) 619
AcvI CACGTG 1 cut(s) 418
AcyI GRCGYC 1 cut(s) 908
AfaI GTAC 2 cut(s) 722, 941
AfeI AGCGCT 1 cut(s) 763
AfiI CCNNNNNNNGG 3 cut(s) 107, 312, 827
AflII CTTAAG 1 cut(s) 1022
AflIII ACRYGT 1 cut(s) 750
AgsI TTSAA 5 cut(s) 205, 323, 477, 584, 1045
AluBI AGCT 3 cut(s) 228, 484, 639
AluI AGCT 3 cut(s) 228, 484, 639
Alw26I GTCTC 2 cut(s) 667, 803
AlwI GGATC 2 cut(s) 683, 696
Aor13HI TCCGGA 1 cut(s) 242
Aor51HI AGCGCT 1 cut(s) 763
AoxI GGCC 6 cut(s) 121, 348, 537, 653, 818, 1010
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 619
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
AspLEI GCGC 4 cut(s) 97, 713, 764, 859
AspS9I GGNCC 3 cut(s) 265, 654, 1010
AsuC2I CCSGG 1 cut(s) 814
AsuHPI GGTGA 4 cut(s) 72, 283, 628, 892
AvaII GGWCC 1 cut(s) 265
BamHI GGATCC 1 cut(s) 688
BbrPI CACGTG 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 379
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 1 cut(s) 104
BccI CCATC 2 cut(s) 437, 1010
BceAI ACGGC 5 cut(s) 136, 143, 356, 615, 724
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciVI GTATCC 1 cut(s) 636
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 814
BcoDI GTCTC 2 cut(s) 667, 803
BfoI RGCGCY 2 cut(s) 98, 765
BfrI CTTAAG 1 cut(s) 1022
BfuI GTATCC 1 cut(s) 636
BglI GCCNNNNNGGC 1 cut(s) 1018
BisI GCNGC 9 cut(s) 93, 98, 101, 306, 494, 501, 840, 891, 992
BlsI GCNGC 9 cut(s) 94, 99, 102, 307, 495, 502, 841, 892, 993
Bme1390I CCNGG 1 cut(s) 814
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 3 cut(s) 265, 654, 1010
BmiI GGNNCC 4 cut(s) 266, 267, 423, 690
BmrFI CCNGG 1 cut(s) 814
BmsI GCATC 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 379
BpmI CTGGAG 1 cut(s) 322
Bpu10I CCTNAGC 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 814
BsaAI YACGTR 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 908
BsaI GGTCTC 1 cut(s) 803
BsaJI CCNNGG 2 cut(s) 534, 1036
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 312, 827
Bse118I RCCGGY 1 cut(s) 651
Bse1I ACTGG 1 cut(s) 563
BseAI TCCGGA 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 534, 1036
BseGI GGATG 3 cut(s) 39, 165, 429
BseLI CCNNNNNNNGG 3 cut(s) 107, 312, 827
BseMII CTCAG 2 cut(s) 238, 448
BseNI ACTGG 1 cut(s) 563
BseRI GAGGAG 4 cut(s) 26, 50, 289, 995
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 104
Bsh1236I CGCG 4 cut(s) 713, 740, 752, 857
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 6 cut(s) 123, 350, 539, 655, 820, 1012
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 4 cut(s) 243, 347, 652, 813
BslFI GGGAC 2 cut(s) 251, 919
BslI CCNNNNNNNGG 3 cut(s) 107, 312, 827
BsmAI GTCTC 2 cut(s) 667, 803
BsmFI GGGAC 2 cut(s) 251, 919
BsmI GAATGC 2 cut(s) 342, 472
BsnI GGCC 6 cut(s) 123, 350, 539, 655, 820, 1012
Bso31I GGTCTC 1 cut(s) 803
Bsp13I TCCGGA 1 cut(s) 242
Bsp143I GATC 3 cut(s) 16, 688, 949
BspANI GGCC 6 cut(s) 123, 350, 539, 655, 820, 1012
BspCNI CTCAG 2 cut(s) 237, 447
BspEI TCCGGA 1 cut(s) 242
BspFNI CGCG 4 cut(s) 713, 740, 752, 857
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 4 cut(s) 266, 267, 423, 690
BspPI GGATC 2 cut(s) 683, 696
BspTI CTTAAG 1 cut(s) 1022
BspTNI GGTCTC 1 cut(s) 803
BsrBI CCGCTC 4 cut(s) 148, 828, 890, 991
BsrFI RCCGGY 1 cut(s) 651
BsrI ACTGG 1 cut(s) 563
BssAI RCCGGY 1 cut(s) 651
BssECI CCNNGG 2 cut(s) 534, 1036
BssMI GATC 3 cut(s) 16, 688, 949
BssNI GRCGYC 1 cut(s) 908
BssT1I CCWWGG 1 cut(s) 1036
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 908
BstAFI CTTAAG 1 cut(s) 1022
BstBAI YACGTR 1 cut(s) 418
BstC8I GCNNGC 3 cut(s) 498, 861, 888
BstDEI CTNAG 2 cut(s) 224, 434
BstF5I GGATG 3 cut(s) 39, 165, 429
BstFNI CGCG 4 cut(s) 713, 740, 752, 857
BstH2I RGCGCY 2 cut(s) 98, 765
BstHHI GCGC 4 cut(s) 97, 713, 764, 859
BstKTI GATC 3 cut(s) 19, 691, 952
BstMAI GTCTC 2 cut(s) 667, 803
BstMBI GATC 3 cut(s) 16, 688, 949
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 4 cut(s) 215, 490, 545, 1018
BstSCI CCNGG 1 cut(s) 812
BstUI CGCG 4 cut(s) 713, 740, 752, 857
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BstZI CGGCCG 1 cut(s) 121
BsuI GTATCC 1 cut(s) 636
BsuRI GGCC 6 cut(s) 123, 350, 539, 655, 820, 1012
BtgZI GCGATG 2 cut(s) 352, 474
BtsCI GGATG 3 cut(s) 39, 165, 429
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 3 cut(s) 498, 861, 888
CciI TCATGA 1 cut(s) 255
CfoI GCGC 4 cut(s) 97, 713, 764, 859
Cfr10I RCCGGY 1 cut(s) 651
Cfr13I GGNCC 3 cut(s) 265, 654, 1010
CseI GACGC 4 cut(s) 241, 746, 758, 916
Csp6I GTAC 2 cut(s) 721, 940
CviAII CATG 2 cut(s) 256, 613
CviQI GTAC 2 cut(s) 721, 940
DdeI CTNAG 2 cut(s) 224, 434
DpnI GATC 3 cut(s) 18, 690, 951
DpnII GATC 3 cut(s) 16, 688, 949
EaeI YGGCCR 3 cut(s) 121, 348, 818
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
EciI GGCGGA 3 cut(s) 185, 292, 908
EclXI CGGCCG 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 1036
Eco31I GGTCTC 1 cut(s) 803
Eco47I GGWCC 1 cut(s) 265
Eco47III AGCGCT 1 cut(s) 763
Eco52I CGGCCG 1 cut(s) 121
Eco72I CACGTG 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 1036
ErhI CCWWGG 1 cut(s) 1036
FaeI CATG 2 cut(s) 259, 616
FaqI GGGAC 2 cut(s) 251, 919
FatI CATG 2 cut(s) 255, 612
FauI CCCGC 4 cut(s) 223, 433, 913, 968
FauNDI CATATG 1 cut(s) 1030
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 9 cut(s) 93, 98, 101, 306, 494, 501, 840, 891, 992
FokI GGATG 3 cut(s) 26, 152, 416
Fsp4HI GCNGC 9 cut(s) 93, 98, 101, 306, 494, 501, 840, 891, 992
GlaI GCGC 4 cut(s) 96, 712, 763, 858
GluI GCNGC 9 cut(s) 93, 98, 101, 306, 494, 501, 840, 891, 992
GsuI CTGGAG 1 cut(s) 322
HaeII RGCGCY 2 cut(s) 98, 765
HaeIII GGCC 6 cut(s) 123, 350, 539, 655, 820, 1012
HapII CCGG 4 cut(s) 243, 347, 652, 813
HgaI GACGC 4 cut(s) 241, 746, 758, 916
HhaI GCGC 4 cut(s) 97, 713, 764, 859
Hin1I GRCGYC 1 cut(s) 908
Hin1II CATG 2 cut(s) 259, 616
Hin6I GCGC 4 cut(s) 95, 711, 762, 857
HinP1I GCGC 4 cut(s) 95, 711, 762, 857
HincII GTYRAC 2 cut(s) 163, 670
HindII GTYRAC 2 cut(s) 163, 670
HinfI GANTC 2 cut(s) 111, 246
HpaII CCGG 4 cut(s) 243, 347, 652, 813
HphI GGTGA 4 cut(s) 72, 283, 628, 892
Hpy166II GTNNAC 5 cut(s) 163, 670, 721, 748, 940
Hpy188I TCNGA 4 cut(s) 110, 328, 693, 808
Hpy188III TCNNGA 4 cut(s) 243, 256, 551, 686
Hpy8I GTNNAC 5 cut(s) 163, 670, 721, 748, 940
Hpy99I CGWCG 4 cut(s) 164, 377, 740, 826
HpyAV CCTTC 5 cut(s) 241, 412, 540, 619, 910
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 2 cut(s) 192, 417
HpyCH4V TGCA 1 cut(s) 703
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 490, 545, 1018
HpyF3I CTNAG 2 cut(s) 224, 434
HpySE526I ACGT 2 cut(s) 192, 417
Hsp92I GRCGYC 1 cut(s) 908
Hsp92II CATG 2 cut(s) 259, 616
HspAI GCGC 4 cut(s) 95, 711, 762, 857
KflI GGGWCCC 1 cut(s) 265
Kpn2I TCCGGA 1 cut(s) 242
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 3 cut(s) 16, 688, 949
LmnI GCTCC 2 cut(s) 233, 553
LpnPI CCDG 9 cut(s) 256, 352, 360, 576, 665, 743, 826, 845, 1026
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 1 cut(s) 611
MaeII ACGT 2 cut(s) 192, 417
MaeIII GTNAC 1 cut(s) 593
MalI GATC 3 cut(s) 18, 690, 951
MbiI CCGCTC 4 cut(s) 148, 828, 890, 991
MboI GATC 3 cut(s) 16, 688, 949
MboII GAAGA 8 cut(s) 65, 193, 325, 379, 566, 569, 572, 925
MflI RGATCY 1 cut(s) 688
MluCI AATT 3 cut(s) 50, 584, 619
MluI ACGCGT 1 cut(s) 750
MmeI TCCRAC 2 cut(s) 261, 351
MroI TCCGGA 1 cut(s) 242
MseI TTAA 2 cut(s) 644, 1023
MslI CAYNNNNRTG 1 cut(s) 24
MspCI CTTAAG 1 cut(s) 1022
MspI CCGG 4 cut(s) 243, 347, 652, 813
MspR9I CCNGG 1 cut(s) 814
Mva1269I GAATGC 2 cut(s) 342, 472
MvnI CGCG 4 cut(s) 713, 740, 752, 857
MwoI GCNNNNNNNGC 4 cut(s) 215, 490, 545, 1018
NciI CCSGG 1 cut(s) 814
NdeI CATATG 1 cut(s) 1030
NdeII GATC 3 cut(s) 16, 688, 949
NlaIII CATG 2 cut(s) 259, 616
NlaIV GGNNCC 4 cut(s) 266, 267, 423, 690
NmeAIII GCCGAG 2 cut(s) 149, 515
NmuCI GTSAC 1 cut(s) 593
PagI TCATGA 1 cut(s) 255
PctI GAATGC 2 cut(s) 342, 472
PfeI GAWTC 2 cut(s) 111, 246
PkrI GCNGC 9 cut(s) 94, 99, 102, 307, 495, 502, 841, 892, 993
PmaCI CACGTG 1 cut(s) 418
PmlI CACGTG 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 418
PpuMI RGGWCCY 1 cut(s) 265
PsiI TTATAA 1 cut(s) 867
Psp5II RGGWCCY 1 cut(s) 265
PspCI CACGTG 1 cut(s) 418
PspN4I GGNNCC 4 cut(s) 266, 267, 423, 690
PspPI GGNCC 3 cut(s) 265, 654, 1010
PspPPI RGGWCCY 1 cut(s) 265
PsuI RGATCY 1 cut(s) 688
RsaI GTAC 2 cut(s) 722, 941
RsaNI GTAC 2 cut(s) 721, 940
RseI CAYNNNNRTG 1 cut(s) 24
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 2 cut(s) 644, 1023
SatI GCNGC 9 cut(s) 93, 98, 101, 306, 494, 501, 840, 891, 992
Sau3AI GATC 3 cut(s) 16, 688, 949
Sau96I GGNCC 3 cut(s) 265, 654, 1010
ScrFI CCNGG 1 cut(s) 814
SfaNI GCATC 1 cut(s) 611
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 1022
SmoI CTYRAG 1 cut(s) 1022
Sse9I AATT 3 cut(s) 50, 584, 619
StyD4I CCNGG 1 cut(s) 812
StyI CCWWGG 1 cut(s) 1036
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 2 cut(s) 195, 420
TaqI TCGA 2 cut(s) 162, 735
TasI AATT 3 cut(s) 50, 584, 619
TatI WGTACW 1 cut(s) 939
TauI GCSGC 8 cut(s) 100, 103, 308, 496, 503, 842, 893, 994
TfiI GAWTC 2 cut(s) 111, 246
Tru1I TTAA 2 cut(s) 644, 1023
Tru9I TTAA 2 cut(s) 644, 1023
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 2 cut(s) 601, 981
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 1 cut(s) 315
Vha464I CTTAAG 1 cut(s) 1022
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 1 cut(s) 619
XmiI GTMKAC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.