Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009684

Physical Location & Seq

Genomic Coordinates Reverse (-)

41218549 .. 41219257

Gene Structure 709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013796

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGGCCCTCCGGCGCTCCACCCAGGCCCTCCCGCGTTCGCCCAGCCCCTCCAGCGCTAGACCCAGCCACTCCGGCGTTCGACATTCGACCCAGGCGCCATTCCGGCGTTCGACGTTCGACCAAGGCACACTGGACCCAGCCCCTCCGGCGTTCAGCGCTCTACCCAGGCCCTCCGACGCTCGATCTAGCCCCTCCGTTACTCAACCAAGGCCCAGCCCCTCCAACGCTAGACCCAGCCACTCCGGCGTTCGACGTTCGACCTAGGCGCCATTCCGGCGTTCGACGTTCGACCAAGGCGCACTGGACCCAGCCCCTCCGGCTTCGGCGCTCTACCCAGGTCCTCCGACGCTCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.2

Weight (kDa)

12.0

Isoelectric Point (pI)

105.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34270
malus_domestica	MD13G1093100.v1.1 MD16G1094100.v1.1 MD16G1094300.v1.1
prunus_persica	Prupe.1G252400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0443721
rosa_laevigata	RLG00000002294 RLG00000005897 RLG00000008335 RLG00000013796 RLG00000022180
rosa_multiflora	Rmu_sc0001426.1_g000009
rosa_roxburghii	Rroxscaffold_5G00356210 Rroxscaffold_5G00384280
rosa_samantha	Rh4AG169500 Rh4AG406700 Rh4BG166300 Rh4BG417800 Rh4CG181000 Rh4CG432000 Rh4DG413100
rosa_wichuraiana	Rw4G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	96, 267
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	34
AcyI	GRCGYC	2 cut(s)	97, 268
AfeI	AGCGCT	2 cut(s)	57, 159
AjnI	CCWGG	4 cut(s)	23, 92, 166, 336
Aor51HI	AGCGCT	2 cut(s)	57, 159
AoxI	GGCC	4 cut(s)	5, 26, 169, 211
ApaI	GGGCCC	1 cut(s)	9
AspA2I	CCTAGG	1 cut(s)	263
AspLEI	GCGC	7 cut(s)	17, 58, 99, 160, 270, 301, 330
AspS9I	GGNCC	8 cut(s)	5, 6, 27, 135, 170, 212, 306, 340
AvaII	GGWCC	3 cut(s)	135, 306, 340
AvrII	CCTAGG	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	2 cut(s)	96, 267
BanII	GRGCYC	1 cut(s)	9
BciT130I	CCWGG	4 cut(s)	25, 94, 168, 338
BfaI	CTAG	5 cut(s)	59, 188, 230, 264, 358
BfoI	RGCGCY	6 cut(s)	18, 59, 100, 161, 271, 331
BglI	GCCNNNNNGGC	6 cut(s)	74, 105, 148, 245, 276, 319
BlnI	CCTAGG	1 cut(s)	263
Bme1390I	CCNGG	4 cut(s)	25, 94, 168, 338
Bme18I	GGWCC	3 cut(s)	135, 306, 340
BmgT120I	GGNCC	8 cut(s)	5, 6, 27, 135, 170, 212, 306, 340
BmiI	GGNNCC	6 cut(s)	6, 7, 98, 137, 269, 308
BmrFI	CCNGG	4 cut(s)	25, 94, 168, 338
BpmI	CTGGAG	1 cut(s)	36
BsaHI	GRCGYC	2 cut(s)	97, 268
BsaJI	CCNNGG	8 cut(s)	23, 92, 123, 166, 208, 263, 294, 336
Bse1I	ACTGG	2 cut(s)	137, 308
BseBI	CCWGG	4 cut(s)	25, 94, 168, 338
BseDI	CCNNGG	8 cut(s)	23, 92, 123, 166, 208, 263, 294, 336
BseNI	ACTGG	2 cut(s)	137, 308
BseSI	GKGCMC	1 cut(s)	9
BseYI	CCCAGC	6 cut(s)	43, 64, 138, 214, 235, 309
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	4 cut(s)	7, 28, 171, 213
BshNI	GGYRCC	2 cut(s)	96, 267
BsiSI	CCGG	7 cut(s)	12, 74, 105, 148, 245, 276, 319
BsnI	GGCC	4 cut(s)	7, 28, 171, 213
Bsp120I	GGGCCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	184, 354
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	4 cut(s)	7, 28, 171, 213
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	6 cut(s)	6, 7, 98, 137, 269, 308
BspT107I	GGYRCC	2 cut(s)	96, 267
BsrI	ACTGG	2 cut(s)	137, 308
BssECI	CCNNGG	8 cut(s)	23, 92, 123, 166, 208, 263, 294, 336
BssMI	GATC	2 cut(s)	184, 354
BssNI	GRCGYC	2 cut(s)	97, 268
BssT1I	CCWWGG	4 cut(s)	123, 208, 263, 294
Bst2UI	CCWGG	4 cut(s)	25, 94, 168, 338
BstACI	GRCGYC	2 cut(s)	97, 268
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	6 cut(s)	18, 59, 100, 161, 271, 331
BstHHI	GCGC	7 cut(s)	17, 58, 99, 160, 270, 301, 330
BstKTI	GATC	2 cut(s)	187, 357
BstMBI	GATC	2 cut(s)	184, 354
BstMWI	GCNNNNNNNGC	8 cut(s)	53, 74, 105, 148, 157, 245, 276, 319
BstNI	CCWGG	4 cut(s)	25, 94, 168, 338
BstSCI	CCNGG	4 cut(s)	23, 92, 166, 336
BstSLI	GKGCMC	1 cut(s)	9
BstUI	CGCG	1 cut(s)	36
BsuRI	GGCC	4 cut(s)	7, 28, 171, 213
BtsIMutI	CAGTG	2 cut(s)	130, 301
CfoI	GCGC	7 cut(s)	17, 58, 99, 160, 270, 301, 330
Cfr13I	GGNCC	8 cut(s)	5, 6, 27, 135, 170, 212, 306, 340
CseI	GACGC	1 cut(s)	187
DinI	GGCGCC	2 cut(s)	98, 269
DpnI	GATC	2 cut(s)	186, 356
DpnII	GATC	2 cut(s)	184, 354
Eco130I	CCWWGG	4 cut(s)	123, 208, 263, 294
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	3 cut(s)	135, 306, 340
Eco47III	AGCGCT	2 cut(s)	57, 159
EcoO109I	RGGNCCY	5 cut(s)	5, 6, 27, 170, 340
EcoRII	CCWGG	4 cut(s)	23, 92, 166, 336
EcoT14I	CCWWGG	4 cut(s)	123, 208, 263, 294
EcoT38I	GRGCYC	1 cut(s)	9
EgeI	GGCGCC	2 cut(s)	98, 269
EheI	GGCGCC	2 cut(s)	98, 269
ErhI	CCWWGG	4 cut(s)	123, 208, 263, 294
FauI	CCCGC	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	9
FspBI	CTAG	5 cut(s)	59, 188, 230, 264, 358
GlaI	GCGC	7 cut(s)	16, 57, 98, 159, 269, 300, 329
GsaI	CCCAGC	6 cut(s)	47, 68, 142, 218, 239, 313
GsuI	CTGGAG	1 cut(s)	36
HaeII	RGCGCY	6 cut(s)	18, 59, 100, 161, 271, 331
HaeIII	GGCC	4 cut(s)	7, 28, 171, 213
HapII	CCGG	7 cut(s)	12, 74, 105, 148, 245, 276, 319
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	7 cut(s)	17, 58, 99, 160, 270, 301, 330
Hin1I	GRCGYC	2 cut(s)	97, 268
Hin6I	GCGC	7 cut(s)	15, 56, 97, 158, 268, 299, 328
HinP1I	GCGC	7 cut(s)	15, 56, 97, 158, 268, 299, 328
HpaII	CCGG	7 cut(s)	12, 74, 105, 148, 245, 276, 319
Hpy188I	TCNGA	2 cut(s)	177, 347
Hpy99I	CGWCG	5 cut(s)	117, 181, 257, 288, 351
HpyCH4IV	ACGT	3 cut(s)	115, 255, 286
HpyF10VI	GCNNNNNNNGC	8 cut(s)	53, 74, 105, 148, 157, 245, 276, 319
HpySE526I	ACGT	3 cut(s)	115, 255, 286
Hsp92I	GRCGYC	2 cut(s)	97, 268
HspAI	GCGC	7 cut(s)	15, 56, 97, 158, 268, 299, 328
KasI	GGCGCC	2 cut(s)	96, 267
Kzo9I	GATC	2 cut(s)	184, 354
LmnI	GCTCC	1 cut(s)	22
MaeI	CTAG	5 cut(s)	59, 188, 230, 264, 358
MaeII	ACGT	3 cut(s)	115, 255, 286
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	2 cut(s)	186, 356
MboI	GATC	2 cut(s)	184, 354
MhlI	GDGCHC	1 cut(s)	9
Mly113I	GGCGCC	2 cut(s)	97, 268
MmeI	TCCRAC	2 cut(s)	200, 248
MnlI	CCTC	9 cut(s)	19, 40, 60, 155, 183, 204, 231, 326, 353
MspI	CCGG	7 cut(s)	12, 74, 105, 148, 245, 276, 319
MspR9I	CCNGG	4 cut(s)	25, 94, 168, 338
MvaI	CCWGG	4 cut(s)	25, 94, 168, 338
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	8 cut(s)	53, 74, 105, 148, 157, 245, 276, 319
NarI	GGCGCC	2 cut(s)	97, 268
NdeII	GATC	2 cut(s)	184, 354
NlaIV	GGNNCC	6 cut(s)	6, 7, 98, 137, 269, 308
PluTI	GGCGCC	2 cut(s)	100, 271
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	4 cut(s)	23, 92, 166, 336
PspFI	CCCAGC	6 cut(s)	43, 64, 138, 214, 235, 309
PspGI	CCWGG	4 cut(s)	23, 92, 166, 336
PspN4I	GGNNCC	6 cut(s)	6, 7, 98, 137, 269, 308
PspOMI	GGGCCC	1 cut(s)	5
PspPI	GGNCC	8 cut(s)	5, 6, 27, 135, 170, 212, 306, 340
PspPPI	RGGWCCY	1 cut(s)	340
Sau3AI	GATC	2 cut(s)	184, 354
Sau96I	GGNCC	8 cut(s)	5, 6, 27, 135, 170, 212, 306, 340
ScrFI	CCNGG	4 cut(s)	25, 94, 168, 338
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	5 cut(s)	118, 258, 265, 289, 342
SfoI	GGCGCC	2 cut(s)	98, 269
SinI	GGWCC	3 cut(s)	135, 306, 340
SsiI	CCGC	1 cut(s)	34
SspDI	GGCGCC	2 cut(s)	96, 267
SspMI	CTAG	5 cut(s)	59, 188, 230, 264, 358
StyD4I	CCNGG	4 cut(s)	23, 92, 166, 336
StyI	CCWWGG	4 cut(s)	123, 208, 263, 294
TaiI	ACGT	3 cut(s)	118, 258, 289
TscAI	CASTG	2 cut(s)	137, 308
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	2 cut(s)	137, 308
VpaK11BI	GGWCC	3 cut(s)	135, 306, 340
XmaJI	CCTAGG	1 cut(s)	263
XspI	CTAG	5 cut(s)	59, 188, 230, 264, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.