Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009684

Physical Location & Seq

Genomic Coordinates Forward (+)

30012971 .. 30016756

Gene Structure 3786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG166300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCTCAAATGCCATCTTACTGGCTCTTCCATGGATGCTCTTCCATTGCTGCAGCATCATTCTGGCATTAAGCCTCCTGAGCATACCCTCTGCAGGGGCAAGCAGATATGCTCAAAATGGTGCTTCTGCTTCAGGTCAGGGCTCAAACATGACGGGTGGAAACCAAAACAAGTGATGCTTAGCTCAGAGGATCTTAAGTTGACTCTCCTACTCCCTCGTGTTTCTTTTGCAGATTTCACTGTTAAAGGAGTATACTTGAGGTACTTGTTTTGTGTTTTTTCAGGTTTTTACTTGTGGAAGGACTGTGTATCTATTAAGGATTATGTTTCTCTTCAAGAGGCGGTTTCATCTTTTTGGGCTTTAGAATCGCCGTATTGCACTTTTGTTTTCAAAAGGGTTTGGTTAATTCCTTTTCGATATCTGGCGATAATGTGTAATTCATATAATGGTTTCAGCAATTATTCCAGCTTCTTAATTACTTTGCTTGCTTTGATCTTGATTGTGCTGGTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

19.78

Weight (kDa)

9.06

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34270
malus_domestica	MD13G1093100.v1.1 MD16G1094100.v1.1 MD16G1094300.v1.1
prunus_persica	Prupe.1G252400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0443721
rosa_laevigata	RLG00000002294 RLG00000005897 RLG00000008335 RLG00000013796 RLG00000022180
rosa_multiflora	Rmu_sc0001426.1_g000009
rosa_roxburghii	Rroxscaffold_5G00356210 Rroxscaffold_5G00384280
rosa_samantha	Rh4AG169500 Rh4AG406700 Rh4BG166300 Rh4BG417800 Rh4CG181000 Rh4CG432000 Rh4DG413100
rosa_wichuraiana	Rw4G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	115
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	93, 94
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	2 cut(s)	335, 391
AluBI	AGCT	2 cut(s)	183, 468
AluI	AGCT	2 cut(s)	183, 468
AlwI	GGATC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	49, 52
BanII	GRGCYC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	36, 64
BccI	CCATC	1 cut(s)	21
BceAI	ACGGC	1 cut(s)	355
BfmI	CTRYAG	2 cut(s)	50, 91
BfrI	CTTAAG	1 cut(s)	194
BisI	GCNGC	2 cut(s)	50, 53
BlpI	GCTNAGC	1 cut(s)	179
BlsI	GCNGC	2 cut(s)	51, 54
BmsI	GCATC	3 cut(s)	25, 64, 165
Bpu10I	CCTNAGC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 94
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	2 cut(s)	93, 94
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	2 cut(s)	69, 198
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	36, 64
BslI	CCNNNNNNNGG	2 cut(s)	93, 94
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	190, 492
Bsp1720I	GCTNAGC	1 cut(s)	179
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	1 cut(s)	341
BspCNI	CTCAG	2 cut(s)	70, 197
BspMAI	CTGCAG	2 cut(s)	54, 95
BspPI	GGATC	1 cut(s)	198
BspQI	GCTCTTC	2 cut(s)	31, 45
BspTI	CTTAAG	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	2 cut(s)	190, 492
BssNAI	GTATAC	1 cut(s)	253
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	30
Bst1107I	GTATAC	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	241, 305
Bst6I	CTCTTC	3 cut(s)	31, 45, 336
BstAFI	CTTAAG	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	101, 486
BstDEI	CTNAG	3 cut(s)	78, 179, 184
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	2 cut(s)	193, 495
BstMBI	GATC	2 cut(s)	190, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstSFI	CTRYAG	2 cut(s)	50, 91
BstV1I	GCAGC	2 cut(s)	36, 64
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	190
BstZ17I	GTATAC	1 cut(s)	253
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	101, 486
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	2 cut(s)	31, 149
CviJI	RGCY	6 cut(s)	24, 73, 142, 183, 359, 468
CviKI_1	RGCY	6 cut(s)	24, 73, 142, 183, 359, 468
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	78, 179, 184
DpnI	GATC	2 cut(s)	192, 494
DpnII	GATC	2 cut(s)	190, 492
Eam1104I	CTCTTC	3 cut(s)	31, 45, 336
EarI	CTCTTC	3 cut(s)	31, 45, 336
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	2 cut(s)	34, 152
FaiI	YATR	8 cut(s)	32, 84, 109, 150, 253, 324, 442, 444
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FatI	CATG	2 cut(s)	30, 148
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	50, 53
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	50, 53
GluI	GCNGC	2 cut(s)	50, 53
Hin1II	CATG	2 cut(s)	34, 152
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	2 cut(s)	202, 365
Hpy166II	GTNNAC	2 cut(s)	201, 253
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	3 cut(s)	77, 335, 496
Hpy8I	GTNNAC	2 cut(s)	201, 253
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	2 cut(s)	241, 305
HpyCH4V	TGCA	4 cut(s)	52, 93, 230, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	3 cut(s)	78, 179, 184
Hsp92II	CATG	2 cut(s)	34, 152
Kzo9I	GATC	2 cut(s)	190, 492
LguI	GCTCTTC	2 cut(s)	31, 45
Lsp1109I	GCAGC	2 cut(s)	36, 64
LweI	GCATC	3 cut(s)	25, 64, 165
MalI	GATC	2 cut(s)	192, 494
MboI	GATC	2 cut(s)	190, 492
MboII	GAAGA	3 cut(s)	18, 32, 323
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	4 cut(s)	405, 436, 457, 474
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	6 cut(s)	84, 98, 181, 225, 252, 331
MseI	TTAA	6 cut(s)	69, 195, 243, 315, 404, 473
MspCI	CTTAAG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	2 cut(s)	190, 492
NlaIII	CATG	2 cut(s)	34, 152
PciSI	GCTCTTC	2 cut(s)	31, 45
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	51, 54
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PstI	CTGCAG	2 cut(s)	54, 95
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SapI	GCTCTTC	2 cut(s)	31, 45
SaqAI	TTAA	6 cut(s)	69, 195, 243, 315, 404, 473
SatI	GCNGC	2 cut(s)	50, 53
Sau3AI	GATC	2 cut(s)	190, 492
SchI	GAGTC	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	5 cut(s)	137, 185, 263, 286, 470
SfaNI	GCATC	3 cut(s)	25, 64, 165
SfcI	CTRYAG	2 cut(s)	50, 91
SmlI	CTYRAG	2 cut(s)	194, 256
SmoI	CTYRAG	2 cut(s)	194, 256
Sse9I	AATT	4 cut(s)	405, 436, 457, 474
SsiI	CCGC	1 cut(s)	341
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	241, 305
TaqI	TCGA	1 cut(s)	415
TasI	AATT	4 cut(s)	405, 436, 457, 474
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	6 cut(s)	69, 195, 243, 315, 404, 473
Tru9I	TTAA	6 cut(s)	69, 195, 243, 315, 404, 473
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	2 cut(s)	49, 52
TspDTI	ATGAA	2 cut(s)	336, 429
TspRI	CASTG	1 cut(s)	244
Vha464I	CTTAAG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.