Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001426.1

Orthogroup ID

OG0009684

Physical Location & Seq

Genomic Coordinates Forward (+)

20636 .. 21685

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001426.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgccaaagaactttgatcatcactatgaccacctcctcatcctctctcaattctcactcttcttgctcaatcttctctcaccctcgttcgcagcgccgccgccaatcggaatctgctacggccgagtagccaacaacctccctccacccaccgtcgccgtcgacatcctcaaagccaacaacataaaacacgtccgcctcttcaatgccaaccccgccactctcagctccttctccaacaccggaatcagcgtcatgattggggtccccaacgaaatcctccccaccctcaccacagcctccgccgcagtggggtggctccaatccgacatcttctccagaattccggccaaccaagtccgctacatagccgtcggcaacgaggtcttcctcaaagaccccttctacactccccacgtggttcccgccatcctcagcctccaccaagccctccaaaccctaaatctctcgcattcaataaagctctcatcgcctcaagccgcctccgtgctatcaatctcctaccctccttcctcggcctcgttcgctcccgacctcaaaccagttctatttcttcttcttcaattcttgcgtgacacggcatctcccttcatggtgaatttgtatccctatttcagctacttgaacaaccggccctatgtctctgttgactatgctttgtttcgggatccgaaccccgtgcaagacggcgcgttggtgtacgacaacctgttcgacgcgagtgtggacgcgtttgtgagcgctttggagagggaggggtttgggggagttgaggtggtggtttcggagaccgggtggccgacgagcggtggggaagcggcgagtgttgagaacgcgctggcgtataatagagaggtggtgaggcgggcggcggagggggttgggacgccgaagaaggtaggggcgggagtggaggtgtacttgtttgatctgtttgatgagaatgaaaaaggcggggaggagtatgagcggcattttgggatttttgggcctgatgggcttaaggcatatgaccttagtttcgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

349

Amino Acids

38.09

Weight (kDa)

5.07

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34270
malus_domestica	MD13G1093100.v1.1 MD16G1094100.v1.1 MD16G1094300.v1.1
prunus_persica	Prupe.1G252400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0443721
rosa_laevigata	RLG00000002294 RLG00000005897 RLG00000008335 RLG00000013796 RLG00000022180
rosa_multiflora	Rmu_sc0001426.1_g000009
rosa_roxburghii	Rroxscaffold_5G00356210 Rroxscaffold_5G00384280
rosa_samantha	Rh4AG169500 Rh4AG406700 Rh4BG166300 Rh4BG417800 Rh4CG181000 Rh4CG432000 Rh4DG413100
rosa_wichuraiana	Rw4G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	828, 991
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	4 cut(s)	713, 740, 752, 857
AclWI	GGATC	2 cut(s)	683, 696
AcoI	YGGCCR	3 cut(s)	121, 348, 818
AcsI	RAATTY	2 cut(s)	342, 619
AcvI	CACGTG	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	908
AfaI	GTAC	2 cut(s)	722, 941
AfeI	AGCGCT	1 cut(s)	763
AfiI	CCNNNNNNNGG	3 cut(s)	107, 312, 827
AflII	CTTAAG	1 cut(s)	1022
AflIII	ACRYGT	2 cut(s)	190, 750
AgsI	TTSAA	4 cut(s)	205, 477, 584, 646
AjiI	CACGTC	1 cut(s)	193
AluBI	AGCT	3 cut(s)	228, 484, 639
AluI	AGCT	3 cut(s)	228, 484, 639
Alw26I	GTCTC	2 cut(s)	667, 803
AlwI	GGATC	2 cut(s)	683, 696
Aor51HI	AGCGCT	1 cut(s)	763
AoxI	GGCC	6 cut(s)	121, 348, 537, 653, 818, 1010
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	2 cut(s)	342, 619
ArsI	GACNNNNNNTTYG	3 cut(s)	716, 748, 1025
AspLEI	GCGC	4 cut(s)	97, 713, 764, 859
AspS9I	GGNCC	3 cut(s)	265, 654, 1010
AsuC2I	CCSGG	1 cut(s)	814
AsuHPI	GGTGA	4 cut(s)	72, 283, 628, 892
AvaII	GGWCC	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	688
BbrPI	CACGTG	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	379
BbvCI	CCTCAGC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	2 cut(s)	437, 1010
BceAI	ACGGC	5 cut(s)	136, 143, 356, 615, 724
BcgI	CGANNNNNNTGC	2 cut(s)	682, 716
BciVI	GTATCC	1 cut(s)	636
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	814
BcoDI	GTCTC	2 cut(s)	667, 803
BfoI	RGCGCY	2 cut(s)	98, 765
BfrI	CTTAAG	1 cut(s)	1022
BfuI	GTATCC	1 cut(s)	636
BglI	GCCNNNNNGGC	1 cut(s)	1018
BisI	GCNGC	8 cut(s)	93, 98, 101, 306, 501, 840, 891, 992
BlsI	GCNGC	8 cut(s)	94, 99, 102, 307, 502, 841, 892, 993
Bme1390I	CCNGG	1 cut(s)	814
Bme18I	GGWCC	1 cut(s)	265
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	265, 654, 1010
BmiI	GGNNCC	5 cut(s)	266, 267, 320, 423, 690
BmrFI	CCNGG	1 cut(s)	814
BmsI	GCATC	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	814
BsaAI	YACGTR	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	908
BsaI	GGTCTC	1 cut(s)	803
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 312, 827
Bse118I	RCCGGY	1 cut(s)	651
Bse1I	ACTGG	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	3 cut(s)	39, 165, 429
BseLI	CCNNNNNNNGG	3 cut(s)	107, 312, 827
BseMII	CTCAG	2 cut(s)	238, 448
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	2 cut(s)	26, 995
BseX3I	CGGCCG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	104
Bsh1236I	CGCG	4 cut(s)	713, 740, 752, 857
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	6 cut(s)	123, 350, 539, 655, 820, 1012
BsiEI	CGRYCG	1 cut(s)	124
BsiSI	CCGG	4 cut(s)	243, 347, 652, 813
BslFI	GGGAC	2 cut(s)	251, 919
BslI	CCNNNNNNNGG	3 cut(s)	107, 312, 827
BsmAI	GTCTC	2 cut(s)	667, 803
BsmFI	GGGAC	2 cut(s)	251, 919
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	6 cut(s)	123, 350, 539, 655, 820, 1012
Bso31I	GGTCTC	1 cut(s)	803
Bsp143I	GATC	3 cut(s)	16, 688, 949
BspANI	GGCC	6 cut(s)	123, 350, 539, 655, 820, 1012
BspCNI	CTCAG	2 cut(s)	237, 447
BspFNI	CGCG	4 cut(s)	713, 740, 752, 857
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	5 cut(s)	266, 267, 320, 423, 690
BspPI	GGATC	2 cut(s)	683, 696
BspTI	CTTAAG	1 cut(s)	1022
BspTNI	GGTCTC	1 cut(s)	803
BsrBI	CCGCTC	2 cut(s)	828, 991
BsrFI	RCCGGY	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	651
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	3 cut(s)	16, 688, 949
BssNI	GRCGYC	1 cut(s)	908
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	2 cut(s)	65, 206
BstACI	GRCGYC	1 cut(s)	908
BstAFI	CTTAAG	1 cut(s)	1022
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	861, 888
BstDEI	CTNAG	3 cut(s)	224, 434, 1037
BstF5I	GGATG	3 cut(s)	39, 165, 429
BstFNI	CGCG	4 cut(s)	713, 740, 752, 857
BstH2I	RGCGCY	2 cut(s)	98, 765
BstHHI	GCGC	4 cut(s)	97, 713, 764, 859
BstKTI	GATC	3 cut(s)	19, 691, 952
BstMAI	GTCTC	2 cut(s)	667, 803
BstMBI	GATC	3 cut(s)	16, 688, 949
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 305, 490, 545, 1018
BstSCI	CCNGG	1 cut(s)	812
BstUI	CGCG	4 cut(s)	713, 740, 752, 857
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BstZI	CGGCCG	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	636
BsuRI	GGCC	6 cut(s)	123, 350, 539, 655, 820, 1012
BtgZI	GCGATG	1 cut(s)	474
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	39, 165, 429
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	861, 888
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	4 cut(s)	97, 713, 764, 859
Cfr10I	RCCGGY	1 cut(s)	651
Cfr13I	GGNCC	3 cut(s)	265, 654, 1010
CseI	GACGC	4 cut(s)	241, 746, 758, 916
Csp6I	GTAC	2 cut(s)	721, 940
CviAII	CATG	2 cut(s)	256, 613
CviQI	GTAC	2 cut(s)	721, 940
DdeI	CTNAG	3 cut(s)	224, 434, 1037
DpnI	GATC	3 cut(s)	18, 690, 951
DpnII	GATC	3 cut(s)	16, 688, 949
EaeI	YGGCCR	3 cut(s)	121, 348, 818
EagI	CGGCCG	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	65, 206
EarI	CTCTTC	2 cut(s)	65, 206
EciI	GGCGGA	3 cut(s)	185, 292, 908
EclXI	CGGCCG	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	803
Eco47I	GGWCC	1 cut(s)	265
Eco47III	AGCGCT	1 cut(s)	763
Eco52I	CGGCCG	1 cut(s)	121
Eco72I	CACGTG	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	342
FaeI	CATG	2 cut(s)	259, 616
FaqI	GGGAC	2 cut(s)	251, 919
FatI	CATG	2 cut(s)	255, 612
FauI	CCCGC	5 cut(s)	223, 433, 879, 919, 968
FauNDI	CATATG	1 cut(s)	1030
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	8 cut(s)	93, 98, 101, 306, 501, 840, 891, 992
FokI	GGATG	3 cut(s)	26, 152, 416
Fsp4HI	GCNGC	8 cut(s)	93, 98, 101, 306, 501, 840, 891, 992
GlaI	GCGC	4 cut(s)	96, 712, 763, 858
GluI	GCNGC	8 cut(s)	93, 98, 101, 306, 501, 840, 891, 992
GsuI	CTGGAG	1 cut(s)	322
HaeII	RGCGCY	2 cut(s)	98, 765
HaeIII	GGCC	6 cut(s)	123, 350, 539, 655, 820, 1012
HapII	CCGG	4 cut(s)	243, 347, 652, 813
HgaI	GACGC	4 cut(s)	241, 746, 758, 916
HhaI	GCGC	4 cut(s)	97, 713, 764, 859
Hin1I	GRCGYC	1 cut(s)	908
Hin1II	CATG	2 cut(s)	259, 616
Hin6I	GCGC	4 cut(s)	95, 711, 762, 857
HinP1I	GCGC	4 cut(s)	95, 711, 762, 857
HincII	GTYRAC	2 cut(s)	163, 670
HindII	GTYRAC	2 cut(s)	163, 670
HinfI	GANTC	2 cut(s)	111, 246
HpaII	CCGG	4 cut(s)	243, 347, 652, 813
HphI	GGTGA	4 cut(s)	72, 283, 628, 892
Hpy166II	GTNNAC	5 cut(s)	163, 670, 721, 748, 940
Hpy188I	TCNGA	4 cut(s)	110, 328, 693, 808
Hpy188III	TCNNGA	4 cut(s)	256, 339, 551, 686
Hpy8I	GTNNAC	5 cut(s)	163, 670, 721, 748, 940
Hpy99I	CGWCG	5 cut(s)	158, 164, 377, 740, 826
HpyAV	CCTTC	5 cut(s)	241, 412, 540, 619, 910
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	2 cut(s)	192, 417
HpyCH4V	TGCA	1 cut(s)	703
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 305, 490, 545, 1018
HpyF3I	CTNAG	3 cut(s)	224, 434, 1037
HpySE526I	ACGT	2 cut(s)	192, 417
Hsp92I	GRCGYC	1 cut(s)	908
Hsp92II	CATG	2 cut(s)	259, 616
HspAI	GCGC	4 cut(s)	95, 711, 762, 857
KflI	GGGWCCC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	16, 688, 949
LmnI	GCTCC	3 cut(s)	233, 324, 553
LpnPI	CCDG	9 cut(s)	256, 352, 360, 576, 665, 743, 826, 845, 1026
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	611
MaeII	ACGT	2 cut(s)	192, 417
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	3 cut(s)	18, 690, 951
MbiI	CCGCTC	2 cut(s)	828, 991
MboI	GATC	3 cut(s)	16, 688, 949
MboII	GAAGA	9 cut(s)	52, 65, 193, 325, 379, 566, 569, 572, 925
MflI	RGATCY	1 cut(s)	688
MluCI	AATT	4 cut(s)	50, 342, 584, 619
MluI	ACGCGT	1 cut(s)	750
MmeI	TCCRAC	2 cut(s)	261, 351
MseI	TTAA	1 cut(s)	1023
MslI	CAYNNNNRTG	1 cut(s)	24
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	4 cut(s)	243, 347, 652, 813
MspR9I	CCNGG	1 cut(s)	814
Mva1269I	GAATGC	1 cut(s)	472
MvnI	CGCG	4 cut(s)	713, 740, 752, 857
MwoI	GCNNNNNNNGC	5 cut(s)	215, 305, 490, 545, 1018
NciI	CCSGG	1 cut(s)	814
NdeI	CATATG	1 cut(s)	1030
NdeII	GATC	3 cut(s)	16, 688, 949
NlaIII	CATG	2 cut(s)	259, 616
NlaIV	GGNNCC	5 cut(s)	266, 267, 320, 423, 690
NmeAIII	GCCGAG	2 cut(s)	149, 515
NmuCI	GTSAC	1 cut(s)	593
PagI	TCATGA	1 cut(s)	255
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	111, 246
PkrI	GCNGC	8 cut(s)	94, 99, 102, 307, 502, 841, 892, 993
PmaCI	CACGTG	1 cut(s)	418
PmlI	CACGTG	1 cut(s)	418
Ppu21I	YACGTR	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
PspCI	CACGTG	1 cut(s)	418
PspN4I	GGNNCC	5 cut(s)	266, 267, 320, 423, 690
PspPI	GGNCC	3 cut(s)	265, 654, 1010
PspPPI	RGGWCCY	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	688
RsaI	GTAC	2 cut(s)	722, 941
RsaNI	GTAC	2 cut(s)	721, 940
RseI	CAYNNNNRTG	1 cut(s)	24
SalI	GTCGAC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	1023
SatI	GCNGC	8 cut(s)	93, 98, 101, 306, 501, 840, 891, 992
Sau3AI	GATC	3 cut(s)	16, 688, 949
Sau96I	GGNCC	3 cut(s)	265, 654, 1010
ScrFI	CCNGG	1 cut(s)	814
SfaNI	GCATC	1 cut(s)	611
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	2 cut(s)	495, 1022
SmoI	CTYRAG	2 cut(s)	495, 1022
Sse9I	AATT	4 cut(s)	50, 342, 584, 619
StyD4I	CCNGG	1 cut(s)	812
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	2 cut(s)	195, 420
TaqI	TCGA	3 cut(s)	162, 735, 1044
TasI	AATT	4 cut(s)	50, 342, 584, 619
TatI	WGTACW	1 cut(s)	939
TauI	GCSGC	7 cut(s)	100, 103, 308, 503, 842, 893, 994
TfiI	GAWTC	2 cut(s)	111, 246
Tru1I	TTAA	1 cut(s)	1023
Tru9I	TTAA	1 cut(s)	1023
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	2 cut(s)	601, 981
TspGWI	ACGGA	1 cut(s)	496
TspRI	CASTG	1 cut(s)	315
Vha464I	CTTAAG	1 cut(s)	1022
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	2 cut(s)	342, 619
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.