FvH4_5g02940
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007506
Physical Location & Seq
Reverse (-)
1758212 .. 1760214
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02940.t1

Sequence Viewer

Length: 1080 bp
ATGGCAATGAGTCATTCATGTTTTTCTGCTTCCTTGTTTTACACTCCTTGCTTCCCCAAAAATGCAACTCTTTCTACGCCTATCCACTTTTCTCAGCAAAGGGTTTATGGTTGTAATGTAATCCAAGCCGGTGCAATCCCTAGGGAAAGCATTGAGCATTCTGGTAATGGGTTTGCTACTTTTCCTCAAAGGCATTACTCCAATACAGAGACAGGTATTAGTACTAGTACTAACAAAGCTCCTCCTCCAAGGCCTCGCCGGATAATCTTGGTTCGGCATGGGCAGAGTGAAGGAAATGTGGATGAGGGTGTTTATACAAGAGTTTCTGATCCAAAGATTGGATTGACAGAGAAAGGTGTGGCTGATGCTGAGGAATGTGGGAGGAGGATCAGAGAGATGCTTGAGGAAGACCAAGTGCATAATTGGAAGGTCTATTTTTATGTGTCTCCTTACAAAAGAGCAGTTGACACACTCAAGGGTTTAGGGAAAGCATTTGAGCGATCGAGAATTGCTGGCATGAGAGAAGAGCCTCGCTTAAGAGAGCAAGATTTTGGGAACTTTCAGGATAGGGAGAAGATGAGAGTGGAGAAAGCTATCCGAATGCGTTATGGTCGATTCTTTTACCGGTTTCCTAATGGGGAATCTGCAGCTGATGTTTATGATAGGATCACAGGATTCAGAGAAACACTTAAATCGGATATAGACGTGGGACGGTTTCAGCCTCCAGGGCAGAGAAATCCAAATATCAACTTAGTGATAGTTTCACATGGTCTAACTCTCAGGGTGTTTCTAATGAGATGGTACAAATGGACAGTGGAGCAGTTTGAGAGACTGAACAACTTTAGTAATGGAAGTATGGTGGTTATGGAAAGAGGCTACGGTGGAAGGTACAGTTTGTCAGTACACCATAGAGAAGAAGAGCTAAGAGAGTTTGGATTGTCAGATGAAATGTTAACTGATCAGGAATGGCAAAAATATGCAAAACCAGGAGAGCTGAACTATGATTGCCCAACGATAAATTCCTTCTTCACCCACTTTGGTGAAGATGATGATGTTGCAGCTGAGGAGGAGTACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

360

Amino Acids

41.53

Weight (kDa)

6.58

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 88 - 296 1.3e-29 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 338
AclWI GGATC 3 cut(s) 323, 395, 674
AcsI RAATTY 1 cut(s) 1018
AfaI GTAC 6 cut(s) 223, 229, 803, 890, 903, 1073
AfiI CCNNNNNNNGG 1 cut(s) 338
AflII CTTAAG 1 cut(s) 535
AgeI ACCGGT 1 cut(s) 624
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 706
AjnI CCWGG 2 cut(s) 724, 985
AjuI GAANNNNNNNTTGG 2 cut(s) 1003, 1035
AleI CACNNNNGTG 1 cut(s) 1038
AluBI AGCT 6 cut(s) 239, 593, 650, 922, 994, 1061
AluI AGCT 6 cut(s) 239, 593, 650, 922, 994, 1061
Alw26I GTCTC 3 cut(s) 203, 450, 823
AlwI GGATC 3 cut(s) 323, 395, 674
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 647, 1058
ApoI RAATTY 1 cut(s) 1018
AsiGI ACCGGT 1 cut(s) 624
AspA2I CCTAGG 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 1021, 1052
AvrII CCTAGG 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 414
BbvCI CCTCAGC 2 cut(s) 369, 1062
BbvI GCAGC 2 cut(s) 659, 1070
BccI CCATC 1 cut(s) 792
BciT130I CCWGG 2 cut(s) 726, 987
BclI TGATCA 1 cut(s) 958
BcoDI GTCTC 3 cut(s) 203, 450, 823
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 2 cut(s) 141, 225
BfmI CTRYAG 1 cut(s) 645
BfrI CTTAAG 1 cut(s) 535
BglI GCCNNNNNGGC 1 cut(s) 727
BisI GCNGC 2 cut(s) 648, 1059
BlnI CCTAGG 1 cut(s) 140
BlsI GCNGC 2 cut(s) 649, 1060
BmcAI AGTACT 3 cut(s) 223, 229, 1073
Bme1390I CCNGG 2 cut(s) 726, 987
BmgBI CACGTC 1 cut(s) 706
BmrFI CCNGG 2 cut(s) 726, 987
BmsI GCATC 2 cut(s) 355, 387
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 708
Bpu10I CCTNAGC 2 cut(s) 369, 1062
BpuEI CTTGAG 2 cut(s) 422, 458
BsaJI CCNNGG 3 cut(s) 140, 248, 725
BsaWI WCCGGW 1 cut(s) 624
BsaXI ACNNNNNCTCC 1 cut(s) 1061
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse118I RCCGGY 2 cut(s) 128, 624
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 726, 987
BseDI CCNNGG 3 cut(s) 140, 248, 725
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 4 cut(s) 107, 360, 793, 1053
BseRI GAGGAG 4 cut(s) 231, 234, 397, 1079
BseXI GCAGC 2 cut(s) 659, 1070
Bsh1285I CGRYCG 1 cut(s) 503
BshFI GGCC 1 cut(s) 253
BshTI ACCGGT 1 cut(s) 624
BsiEI CGRYCG 1 cut(s) 503
BsiSI CCGG 3 cut(s) 129, 259, 625
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 3 cut(s) 203, 450, 823
BsmFI GGGAC 1 cut(s) 723
BsmI GAATGC 2 cut(s) 157, 606
BsnI GGCC 1 cut(s) 253
Bsp143I GATC 5 cut(s) 328, 387, 500, 666, 958
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 4 cut(s) 106, 361, 792, 1054
BspMAI CTGCAG 1 cut(s) 649
BspPI GGATC 3 cut(s) 323, 395, 674
BspQI GCTCTTC 2 cut(s) 519, 912
BspTI CTTAAG 1 cut(s) 535
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 2 cut(s) 128, 624
BssAI RCCGGY 2 cut(s) 128, 624
BssECI CCNNGG 3 cut(s) 140, 248, 725
BssMI GATC 5 cut(s) 328, 387, 500, 666, 958
BssT1I CCWWGG 2 cut(s) 140, 248
Bst2UI CCWGG 2 cut(s) 726, 987
Bst4CI ACNGT 4 cut(s) 714, 814, 881, 893
Bst6I CTCTTC 2 cut(s) 519, 912
BstAFI CTTAAG 1 cut(s) 535
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 6 cut(s) 93, 369, 751, 779, 923, 1062
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 5 cut(s) 331, 390, 503, 669, 961
BstMAI GTCTC 3 cut(s) 203, 450, 823
BstMBI GATC 5 cut(s) 328, 387, 500, 666, 958
BstMCI CGRYCG 1 cut(s) 503
BstMWI GCNNNNNNNGC 1 cut(s) 727
BstNI CCWGG 2 cut(s) 726, 987
BstSCI CCNGG 2 cut(s) 724, 985
BstSFI CTRYAG 1 cut(s) 645
BstV1I GCAGC 2 cut(s) 659, 1070
BstV2I GAAGAC 1 cut(s) 414
BsuRI GGCC 1 cut(s) 253
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 819
Cac8I GCNNGC 1 cut(s) 514
Cfr10I RCCGGY 2 cut(s) 128, 624
Csp6I GTAC 6 cut(s) 222, 228, 802, 889, 902, 1072
CspAI ACCGGT 1 cut(s) 624
CviAII CATG 4 cut(s) 18, 278, 517, 767
CviQI GTAC 6 cut(s) 222, 228, 802, 889, 902, 1072
DdeI CTNAG 6 cut(s) 93, 369, 751, 779, 923, 1062
DpnI GATC 5 cut(s) 330, 389, 502, 668, 960
DpnII GATC 5 cut(s) 328, 387, 500, 666, 958
Eam1104I CTCTTC 2 cut(s) 519, 912
EarI CTCTTC 2 cut(s) 519, 912
Eco130I CCWWGG 2 cut(s) 140, 248
Eco147I AGGCCT 1 cut(s) 253
EcoRII CCWGG 2 cut(s) 724, 985
EcoT14I CCWWGG 2 cut(s) 140, 248
ErhI CCWWGG 2 cut(s) 140, 248
FaeI CATG 4 cut(s) 21, 281, 520, 770
FaqI GGGAC 1 cut(s) 723
FatI CATG 4 cut(s) 17, 277, 516, 766
FbaI TGATCA 1 cut(s) 958
Fnu4HI GCNGC 2 cut(s) 648, 1059
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 648, 1059
FspBI CTAG 2 cut(s) 141, 225
GluI GCNGC 2 cut(s) 648, 1059
GsuI CTGGAG 1 cut(s) 708
HaeIII GGCC 1 cut(s) 253
HapII CCGG 3 cut(s) 129, 259, 625
Hin1II CATG 4 cut(s) 21, 281, 520, 770
HincII GTYRAC 2 cut(s) 466, 954
HindII GTYRAC 2 cut(s) 466, 954
HinfI GANTC 4 cut(s) 10, 615, 641, 675
HpaI GTTAAC 1 cut(s) 954
HpaII CCGG 3 cut(s) 129, 259, 625
HphI GGTGA 2 cut(s) 1021, 1052
Hpy166II GTNNAC 3 cut(s) 466, 904, 954
Hpy188I TCNGA 6 cut(s) 328, 392, 599, 680, 697, 943
Hpy188III TCNNGA 3 cut(s) 504, 563, 962
Hpy8I GTNNAC 3 cut(s) 466, 904, 954
HpyAV CCTTC 4 cut(s) 284, 421, 879, 1033
HpyCH4III ACNGT 4 cut(s) 714, 814, 881, 893
HpyCH4IV ACGT 1 cut(s) 705
HpyCH4V TGCA 6 cut(s) 65, 134, 418, 647, 980, 1058
HpyF10VI GCNNNNNNNGC 1 cut(s) 727
HpyF3I CTNAG 6 cut(s) 93, 369, 751, 779, 923, 1062
HpySE526I ACGT 1 cut(s) 705
Hsp92II CATG 4 cut(s) 21, 281, 520, 770
Ksp22I TGATCA 1 cut(s) 958
KspAI GTTAAC 1 cut(s) 954
Kzo9I GATC 5 cut(s) 328, 387, 500, 666, 958
LguI GCTCTTC 2 cut(s) 519, 912
LmnI GCTCC 2 cut(s) 244, 817
Lsp1109I GCAGC 2 cut(s) 659, 1070
LweI GCATC 2 cut(s) 355, 387
MaeI CTAG 2 cut(s) 141, 225
MaeII ACGT 1 cut(s) 705
MalI GATC 5 cut(s) 330, 389, 502, 668, 960
MboI GATC 5 cut(s) 328, 387, 500, 666, 958
MboII GAAGA 7 cut(s) 419, 536, 586, 926, 929, 1018, 1055
MluCI AATT 3 cut(s) 421, 507, 1018
MlyI GAGTC 1 cut(s) 19
MseI TTAA 3 cut(s) 536, 690, 953
MslI CAYNNNNRTG 1 cut(s) 1038
MspA1I CMGCKG 2 cut(s) 650, 1061
MspCI CTTAAG 1 cut(s) 535
MspI CCGG 3 cut(s) 129, 259, 625
MspR9I CCNGG 2 cut(s) 726, 987
Mva1269I GAATGC 2 cut(s) 157, 606
MvaI CCWGG 2 cut(s) 726, 987
MwoI GCNNNNNNNGC 1 cut(s) 727
NdeII GATC 5 cut(s) 328, 387, 500, 666, 958
NlaIII CATG 4 cut(s) 21, 281, 520, 770
OliI CACNNNNGTG 1 cut(s) 1038
PceI AGGCCT 1 cut(s) 253
PciSI GCTCTTC 2 cut(s) 519, 912
PctI GAATGC 2 cut(s) 157, 606
PfeI GAWTC 3 cut(s) 615, 641, 675
PflMI CCANNNNNTGG 1 cut(s) 338
PinAI ACCGGT 1 cut(s) 624
PkrI GCNGC 2 cut(s) 649, 1060
Ple19I CGATCG 1 cut(s) 503
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 724, 985
PspGI CCWGG 2 cut(s) 724, 985
PstI CTGCAG 1 cut(s) 649
PvuI CGATCG 1 cut(s) 503
PvuII CAGCTG 2 cut(s) 650, 1061
RsaI GTAC 6 cut(s) 223, 229, 803, 890, 903, 1073
RsaNI GTAC 6 cut(s) 222, 228, 802, 889, 902, 1072
RseI CAYNNNNRTG 1 cut(s) 1038
SapI GCTCTTC 2 cut(s) 519, 912
SaqAI TTAA 3 cut(s) 536, 690, 953
SatI GCNGC 2 cut(s) 648, 1059
Sau3AI GATC 5 cut(s) 328, 387, 500, 666, 958
ScaI AGTACT 3 cut(s) 223, 229, 1073
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 726, 987
SfaNI GCATC 2 cut(s) 355, 387
SfcI CTRYAG 1 cut(s) 645
SmiMI CAYNNNNRTG 1 cut(s) 1038
SmlI CTYRAG 3 cut(s) 401, 473, 535
SmoI CTYRAG 3 cut(s) 401, 473, 535
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 3 cut(s) 421, 507, 1018
SseBI AGGCCT 1 cut(s) 253
SspMI CTAG 2 cut(s) 141, 225
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 2 cut(s) 724, 985
StyI CCWWGG 2 cut(s) 140, 248
TaaI ACNGT 4 cut(s) 714, 814, 881, 893
TaiI ACGT 1 cut(s) 708
TaqI TCGA 2 cut(s) 503, 613
TasI AATT 3 cut(s) 421, 507, 1018
TatI WGTACW 4 cut(s) 221, 227, 901, 1071
TfiI GAWTC 3 cut(s) 615, 641, 675
Tru1I TTAA 3 cut(s) 536, 690, 953
Tru9I TTAA 3 cut(s) 536, 690, 953
TscAI CASTG 1 cut(s) 819
TseI GCWGC 2 cut(s) 647, 1058
TspDTI ATGAA 2 cut(s) 6, 960
TspRI CASTG 1 cut(s) 819
Van91I CCANNNNNTGG 1 cut(s) 338
Vha464I CTTAAG 1 cut(s) 535
XapI RAATTY 1 cut(s) 1018
XmaJI CCTAGG 1 cut(s) 140
XspI CTAG 2 cut(s) 141, 225
ZrmI AGTACT 3 cut(s) 223, 229, 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.