Rroxscaffold_3G00258820
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007506
Physical Location & Seq
Reverse (-)
53260760 .. 53262864
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258820.1

Sequence Viewer

Length: 1080 bp
ATGGCAATGACTCATCCATGCTTTTCTGCTTCCTCGTTTTACATTTCTTGCTTCCCCAAAAATGAAACTCTTTCTTCACCTATCCTAGTTTCTCAACAAAGGGTCTATGATTTTACTATAATCCAAGCCTGTGCAATCCCCAGGGATACCATTGAACGTTCTGGTAATGGGTTTGCTGGTTTTCCTCAAAAGTATTACTCTCATAAAGAATCAGGTACTAGTACCAGTAAAACTAAAACTCCACCTCCAAGGCCTCGCCGGATAATTCTGGTCCGGCACGGGCAGAGTGAAGGAAATGTGGATGAGGGAGTTTACACAAGAGTTTCTGATCCAAAGATTGGATTGACAGAGAAAGGTGTGGCAGATGCTGAGAAATGTGGGAGGAGGATCAGGGAGATGATTGAGGAAGACCAAGTGCACAATTGGAAGATCTATTTTTATGTTTCTCCTTATAAAAGAGCAGTTGACACACTCAAGGGTTTAGGGAAATCATTTGAGCGCTCAAGAATTGCTGGCATGAGAGAAGAGCCTCGCTTAAGAGAGCAAGATTTTGGGAATTTTCAGGATAGGGAGAAGATGAGAGTGGAGAAAGCTATCCGTATGCGTTATGGTCGATTCTTTTACCGGTTTCCTAATGGGGAATCTGCAGCTGATGTTTATGACAGAATCACAGGATTCAGAGAAACACTGAAATCGGATATTGACGTGGGACGGTTTCAGCCACCAGGGCAGAGAAACCCAAACATCAACTTGGTGATAGTTTCACATGGCTTAACTCTGAGGGTGTTTCTGATGAGATGGTATAAATGGACAGTGGAGCAGTTTGAGAGACTGAACAACTTTAGTAATGGAAGCATGGTGGTTATGGAACGAGGCTATGGTGGAAGGTACAGTTTGTCAGTGCACCACGAAGAAGAAGAGCTAAGAGAGTTTGGATTGTCAGATGAAATGCTAACTGATCAGGAATGGCAAAAATATGCAAAACCTGGGGAGCTGAACTATGACTGCCCAACGCTAAATTCCTTCTTCACACACTTCGGTGAAGATGATGATGGTGCAGCTGAGGAGGAAGAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

359

Amino Acids

41.67

Weight (kDa)

6.49

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 88 - 296 1.4e-29 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 338
AclI AACGTT 1 cut(s) 157
AclWI GGATC 2 cut(s) 323, 395
AcsI RAATTY 2 cut(s) 556, 1018
AfaI GTAC 4 cut(s) 217, 223, 890, 1076
AfeI AGCGCT 1 cut(s) 500
AfiI CCNNNNNNNGG 1 cut(s) 338
AflII CTTAAG 1 cut(s) 535
AgeI ACCGGT 1 cut(s) 624
AgsI TTSAA 1 cut(s) 155
AhlI ACTAGT 1 cut(s) 218
AjiI CACGTC 1 cut(s) 706
AjnI CCWGG 3 cut(s) 140, 724, 985
AjuI GAANNNNNNNTTGG 2 cut(s) 1003, 1035
AleI CACNNNNGTG 1 cut(s) 1038
AluBI AGCT 5 cut(s) 593, 650, 922, 994, 1061
AluI AGCT 5 cut(s) 593, 650, 922, 994, 1061
Alw21I GWGCWC 2 cut(s) 420, 906
Alw26I GTCTC 1 cut(s) 823
Alw44I GTGCAC 2 cut(s) 416, 902
AlwI GGATC 2 cut(s) 323, 395
AlwNI CAGNNNCTG 1 cut(s) 368
Aor51HI AGCGCT 1 cut(s) 500
AoxI GGCC 1 cut(s) 251
ApaLI GTGCAC 2 cut(s) 416, 902
ApeKI GCWGC 2 cut(s) 647, 1058
ApoI RAATTY 2 cut(s) 556, 1018
AsiGI ACCGGT 1 cut(s) 624
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 3 cut(s) 69, 766, 1052
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 2 cut(s) 420, 906
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 2 cut(s) 420, 906
BbvCI CCTCAGC 1 cut(s) 1062
BbvI GCAGC 2 cut(s) 659, 1070
BccI CCATC 2 cut(s) 792, 1046
BciT130I CCWGG 3 cut(s) 142, 726, 987
BciVI GTATCC 1 cut(s) 139
BclI TGATCA 1 cut(s) 958
BcoDI GTCTC 1 cut(s) 823
BcuI ACTAGT 1 cut(s) 218
BfaI CTAG 3 cut(s) 86, 219, 1078
BfmI CTRYAG 1 cut(s) 645
BfoI RGCGCY 1 cut(s) 502
BfrI CTTAAG 1 cut(s) 535
BfuI GTATCC 1 cut(s) 139
BglI GCCNNNNNGGC 1 cut(s) 727
BglII AGATCT 1 cut(s) 429
BisI GCNGC 2 cut(s) 648, 1059
BlsI GCNGC 2 cut(s) 649, 1060
BmcAI AGTACT 1 cut(s) 1076
Bme1390I CCNGG 3 cut(s) 142, 726, 987
Bme18I GGWCC 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 706
BmgT120I GGNCC 1 cut(s) 271
BmrFI CCNGG 3 cut(s) 142, 726, 987
BmsI GCATC 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 2 cut(s) 458, 487
BsaJI CCNNGG 5 cut(s) 140, 141, 248, 725, 986
BsaWI WCCGGW 1 cut(s) 624
BsaXI ACNNNNNCTCC 5 cut(s) 223, 229, 253, 259, 1058
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse118I RCCGGY 1 cut(s) 624
Bse1I ACTGG 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 3 cut(s) 142, 726, 987
BseDI CCNNGG 5 cut(s) 140, 141, 248, 725, 986
BseGI GGATG 2 cut(s) 13, 307
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 360, 770, 1053
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 2 cut(s) 397, 1079
BseSI GKGCMC 2 cut(s) 420, 906
BseXI GCAGC 2 cut(s) 659, 1070
BsgI GTGCAG 1 cut(s) 1077
BshFI GGCC 1 cut(s) 253
BshTI ACCGGT 1 cut(s) 624
BsiHKAI GWGCWC 2 cut(s) 420, 906
BsiSI CCGG 3 cut(s) 259, 274, 625
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 823
BsmFI GGGAC 1 cut(s) 723
BsnI GGCC 1 cut(s) 253
Bsp1286I GDGCHC 2 cut(s) 420, 906
Bsp143I GATC 4 cut(s) 328, 387, 429, 958
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 3 cut(s) 361, 771, 1054
BspMAI CTGCAG 1 cut(s) 649
BspPI GGATC 2 cut(s) 323, 395
BspQI GCTCTTC 2 cut(s) 519, 912
BspTI CTTAAG 1 cut(s) 535
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 624
BsrI ACTGG 1 cut(s) 225
BssAI RCCGGY 1 cut(s) 624
BssECI CCNNGG 5 cut(s) 140, 141, 248, 725, 986
BssMI GATC 4 cut(s) 328, 387, 429, 958
BssT1I CCWWGG 1 cut(s) 248
Bst2UI CCWGG 3 cut(s) 142, 726, 987
Bst4CI ACNGT 3 cut(s) 714, 814, 893
Bst6I CTCTTC 3 cut(s) 519, 912, 1065
BstAFI CTTAAG 1 cut(s) 535
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 4 cut(s) 369, 779, 923, 1062
BstF5I GGATG 2 cut(s) 13, 307
BstH2I RGCGCY 1 cut(s) 502
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 4 cut(s) 331, 390, 432, 961
BstMAI GTCTC 1 cut(s) 823
BstMBI GATC 4 cut(s) 328, 387, 429, 958
BstMWI GCNNNNNNNGC 1 cut(s) 727
BstNI CCWGG 3 cut(s) 142, 726, 987
BstSCI CCNGG 3 cut(s) 140, 724, 985
BstSFI CTRYAG 1 cut(s) 645
BstSLI GKGCMC 2 cut(s) 420, 906
BstV1I GCAGC 2 cut(s) 659, 1070
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 253
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 2 cut(s) 13, 307
BtsIMutI CAGTG 3 cut(s) 686, 819, 906
Cac8I GCNNGC 1 cut(s) 514
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 501
Cfr10I RCCGGY 1 cut(s) 624
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 4 cut(s) 216, 222, 889, 1075
CspAI ACCGGT 1 cut(s) 624
CviAII CATG 4 cut(s) 18, 517, 767, 856
CviQI GTAC 4 cut(s) 216, 222, 889, 1075
DdeI CTNAG 4 cut(s) 369, 779, 923, 1062
DpnI GATC 4 cut(s) 330, 389, 431, 960
DpnII GATC 4 cut(s) 328, 387, 429, 958
Eam1104I CTCTTC 3 cut(s) 519, 912, 1065
EarI CTCTTC 3 cut(s) 519, 912, 1065
Eco130I CCWWGG 1 cut(s) 248
Eco147I AGGCCT 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 271
Eco47III AGCGCT 1 cut(s) 500
EcoRII CCWGG 3 cut(s) 140, 724, 985
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 4 cut(s) 21, 520, 770, 859
FaqI GGGAC 1 cut(s) 723
FatI CATG 4 cut(s) 17, 516, 766, 855
FbaI TGATCA 1 cut(s) 958
Fnu4HI GCNGC 2 cut(s) 648, 1059
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 648, 1059
FspBI CTAG 3 cut(s) 86, 219, 1078
GlaI GCGC 1 cut(s) 500
GluI GCNGC 2 cut(s) 648, 1059
HaeII RGCGCY 1 cut(s) 502
HaeIII GGCC 1 cut(s) 253
HapII CCGG 3 cut(s) 259, 274, 625
HhaI GCGC 1 cut(s) 501
Hin1II CATG 4 cut(s) 21, 520, 770, 859
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 6 cut(s) 10, 209, 615, 641, 666, 675
HpaII CCGG 3 cut(s) 259, 274, 625
HphI GGTGA 3 cut(s) 69, 766, 1052
Hpy166II GTNNAC 4 cut(s) 313, 418, 466, 904
Hpy188I TCNGA 6 cut(s) 328, 680, 697, 780, 792, 943
Hpy188III TCNNGA 3 cut(s) 504, 563, 962
Hpy8I GTNNAC 4 cut(s) 313, 418, 466, 904
HpyAV CCTTC 3 cut(s) 284, 879, 1033
HpyCH4III ACNGT 3 cut(s) 714, 814, 893
HpyCH4IV ACGT 2 cut(s) 157, 705
HpyCH4V TGCA 6 cut(s) 134, 418, 647, 904, 980, 1058
HpyF10VI GCNNNNNNNGC 1 cut(s) 727
HpyF3I CTNAG 4 cut(s) 369, 779, 923, 1062
HpySE526I ACGT 2 cut(s) 157, 705
Hsp92II CATG 4 cut(s) 21, 520, 770, 859
HspAI GCGC 1 cut(s) 499
Ksp22I TGATCA 1 cut(s) 958
Kzo9I GATC 4 cut(s) 328, 387, 429, 958
LguI GCTCTTC 2 cut(s) 519, 912
LmnI GCTCC 2 cut(s) 817, 991
Lsp1109I GCAGC 2 cut(s) 659, 1070
LweI GCATC 1 cut(s) 355
MaeI CTAG 3 cut(s) 86, 219, 1078
MaeII ACGT 2 cut(s) 157, 705
MalI GATC 4 cut(s) 330, 389, 431, 960
MboI GATC 4 cut(s) 328, 387, 429, 958
MfeI CAATTG 1 cut(s) 421
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 2 cut(s) 420, 906
MluCI AATT 5 cut(s) 264, 421, 507, 556, 1018
MlyI GAGTC 1 cut(s) 4
MseI TTAA 2 cut(s) 536, 773
MslI CAYNNNNRTG 1 cut(s) 1038
MspA1I CMGCKG 2 cut(s) 650, 1061
MspCI CTTAAG 1 cut(s) 535
MspI CCGG 3 cut(s) 259, 274, 625
MspR9I CCNGG 3 cut(s) 142, 726, 987
MunI CAATTG 1 cut(s) 421
MvaI CCWGG 3 cut(s) 142, 726, 987
MwoI GCNNNNNNNGC 1 cut(s) 727
NdeII GATC 4 cut(s) 328, 387, 429, 958
NlaIII CATG 4 cut(s) 21, 520, 770, 859
OliI CACNNNNGTG 1 cut(s) 1038
PasI CCCWGGG 1 cut(s) 141
PceI AGGCCT 1 cut(s) 253
PciSI GCTCTTC 2 cut(s) 519, 912
PfeI GAWTC 5 cut(s) 209, 615, 641, 666, 675
PflMI CCANNNNNTGG 1 cut(s) 338
PinAI ACCGGT 1 cut(s) 624
PkrI GCNGC 2 cut(s) 649, 1060
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PsiI TTATAA 1 cut(s) 453
Psp1406I AACGTT 1 cut(s) 157
Psp6I CCWGG 3 cut(s) 140, 724, 985
PspGI CCWGG 3 cut(s) 140, 724, 985
PspPI GGNCC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 649
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 429
PvuII CAGCTG 2 cut(s) 650, 1061
RsaI GTAC 4 cut(s) 217, 223, 890, 1076
RsaNI GTAC 4 cut(s) 216, 222, 889, 1075
RseI CAYNNNNRTG 1 cut(s) 1038
SapI GCTCTTC 2 cut(s) 519, 912
SaqAI TTAA 2 cut(s) 536, 773
SatI GCNGC 2 cut(s) 648, 1059
Sau3AI GATC 4 cut(s) 328, 387, 429, 958
Sau96I GGNCC 1 cut(s) 271
ScaI AGTACT 1 cut(s) 1076
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 3 cut(s) 142, 726, 987
SduI GDGCHC 2 cut(s) 420, 906
SfaNI GCATC 1 cut(s) 355
SfcI CTRYAG 1 cut(s) 645
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 1038
SmlI CTYRAG 3 cut(s) 473, 502, 535
SmoI CTYRAG 3 cut(s) 473, 502, 535
SpeI ACTAGT 1 cut(s) 218
Sse9I AATT 5 cut(s) 264, 421, 507, 556, 1018
SseBI AGGCCT 1 cut(s) 253
SspMI CTAG 3 cut(s) 86, 219, 1078
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 3 cut(s) 140, 724, 985
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 3 cut(s) 714, 814, 893
TaiI ACGT 2 cut(s) 160, 708
TaqI TCGA 1 cut(s) 613
TasI AATT 5 cut(s) 264, 421, 507, 556, 1018
TatI WGTACW 1 cut(s) 1074
TfiI GAWTC 5 cut(s) 209, 615, 641, 666, 675
Tru1I TTAA 2 cut(s) 536, 773
Tru9I TTAA 2 cut(s) 536, 773
TscAI CASTG 3 cut(s) 693, 819, 906
TseI GCWGC 2 cut(s) 647, 1058
TspDTI ATGAA 2 cut(s) 78, 960
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 3 cut(s) 693, 819, 906
Van91I CCANNNNNTGG 1 cut(s) 338
Vha464I CTTAAG 1 cut(s) 535
VneI GTGCAC 2 cut(s) 416, 902
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 2 cut(s) 556, 1018
XspI CTAG 3 cut(s) 86, 219, 1078
ZrmI AGTACT 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.