MD06G1088600.v1.1
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0007506
Physical Location & Seq
Reverse (-)
21598167 .. 21600066
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1088600.v1.1.491

Sequence Viewer

Length: 1104 bp
ATGGCAATGGCTCAATTTTGCTTCTCTGCTTCCTTGTGTTACAATTCTTGCTTTCCAAGAAATTCAAATCTTTCTCTCACACTTCCGTCGGATTCACCCAAACGTAAGCCGCTAGAAAATGGGGTGCTTAGTTTCAACACAATCCAATGCCGTGTGAACCATAATGGGACAGTTGAGCATTCTGATAATGGGTTGTCTAGTTTTCCCGAAAAGCATTTGCATGGAAGGTCAGCTAGTAGTTCGAAATCTCCACCTCCTAGGCCTCGCCGGATAATCTTGGTTCGACATGGGCAGAGTGAAGGAAATGTAGATGAGAGTGCTTATACAAGAATTTCTGATCCAAAGATTGGACTGACAGAGAAAGGGTTGGTTGATGCTGAGGATTGTGGGAGGAGGATAAGGGAGATGATTGAGGGGGACAAAGCGCATAATTGGAAGGTCTACTTTTATGTGTCTCCTTATAGAAGGACAGTCGAAACATTGAAGGGTTTGGGTAGAGCATTTGAGCGCTCAAGAATCGCCGGCATGAGAGTAGAGCCTCGGCTTAGAGAGCAGGATTTCGGGAATTTTCAGGATAGGGAGAAGATGAGAGTAGAGAAAGCGATTCGCATGCTTTATGGTCGTTTCTTTTATCGGTTTCCGAATGGGGAATCTGCAGCTGATGTTTATGATAGGATTACAGGATTTAGAGAAACACTGAGATCGGATATCGATATAGGACGATTTCAGCCACCAGGCGAGAGAAATCCAAACATCAACTTGGTGCTAGTTTCACATGGTCTAACGCTTAGAGTGTTCCTCATGAGATGGTACAAATGGACGGTGGAGCAATTTGAGAGGCTGAATAACTTTGGCAATGGAGGCATGGTTGTCATGGAAAGAGGCTATGGTGGAAGGTACAGCTTGTTAATGCACCACACAGAAGAGGAGCTAAGACAGTTTGGAATGACAGATGAAATGCTCGTTGATCAAGAATGGCAAAAGTATGCAAAACCCGGGGAGCTGAACTACGATTGCCCGATGCTAAATTCCTTCTTCACCCACTTCGCTGATGGTGACGATGATGGTAATCGCGCAGCTGTTAGCCTTGGAGCTGATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

368

Amino Acids

42.15

Weight (kDa)

8.45

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 91 - 300 3.9e-27 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 1 cut(s) 441
AccII CGCG 1 cut(s) 1074
AciI CCGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 4 cut(s) 61, 330, 565, 1027
AfaI GTAC 2 cut(s) 812, 899
AfeI AGCGCT 1 cut(s) 509
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 3 cut(s) 66, 136, 484
AjnI CCWGG 1 cut(s) 733
AluBI AGCT 7 cut(s) 233, 659, 903, 931, 1003, 1079, 1094
AluI AGCT 7 cut(s) 233, 659, 903, 931, 1003, 1079, 1094
Alw26I GTCTC 1 cut(s) 459
AlwI GGATC 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 995
Aor51HI AGCGCT 1 cut(s) 509
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 2 cut(s) 656, 1076
ApoI RAATTY 4 cut(s) 61, 330, 565, 1027
AspA2I CCTAGG 1 cut(s) 257
AspLEI GCGC 3 cut(s) 427, 510, 1076
AsuC2I CCSGG 2 cut(s) 996, 997
AsuHPI GGTGA 3 cut(s) 87, 1030, 1067
AsuII TTCGAA 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 995
AvrII CCTAGG 1 cut(s) 257
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 668, 1088
BccI CCATC 3 cut(s) 801, 1046, 1058
BceAI ACGGC 1 cut(s) 135
BcgI CGANNNNNNTGC 2 cut(s) 592, 626
BciT130I CCWGG 1 cut(s) 735
BclI TGATCA 1 cut(s) 967
BcnI CCSGG 2 cut(s) 996, 997
BcoDI GTCTC 1 cut(s) 459
BfaI CTAG 5 cut(s) 113, 198, 234, 258, 767
BfmI CTRYAG 1 cut(s) 654
BfoI RGCGCY 1 cut(s) 511
BisI GCNGC 3 cut(s) 110, 657, 1077
BlnI CCTAGG 1 cut(s) 257
BlsI GCNGC 3 cut(s) 111, 658, 1078
Bme1390I CCNGG 3 cut(s) 735, 996, 997
BmeT110I CYCGRG 1 cut(s) 995
BmrFI CCNGG 3 cut(s) 735, 996, 997
BmsI GCATC 2 cut(s) 364, 1011
BplI GAGNNNNNCTC 2 cut(s) 783, 815
Bpu10I CCTNAGC 1 cut(s) 378
Bpu14I TTCGAA 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 496
BpuMI CCSGG 2 cut(s) 996, 997
Bsa29I ATCGAT 1 cut(s) 711
BsaBI GATNNNNATC 1 cut(s) 1068
BsaJI CCNNGG 5 cut(s) 257, 539, 995, 996, 1087
BsaXI ACNNNNNCTCC 2 cut(s) 852, 882
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 1 cut(s) 521
Bse3DI GCAATG 2 cut(s) 12, 862
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 1 cut(s) 735
BseCI ATCGAT 1 cut(s) 711
BseDI CCNNGG 5 cut(s) 257, 539, 995, 996, 1087
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 2 cut(s) 12, 862
BseMII CTCAG 2 cut(s) 369, 689
BseRI GAGGAG 2 cut(s) 406, 941
BseXI GCAGC 2 cut(s) 668, 1088
Bsh1236I CGCG 1 cut(s) 1074
BshFI GGCC 1 cut(s) 262
BshVI ATCGAT 1 cut(s) 711
BsiHKCI CYCGRG 1 cut(s) 995
BsiSI CCGG 3 cut(s) 268, 522, 996
BslFI GGGAC 2 cut(s) 181, 431
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 459
BsmFI GGGAC 2 cut(s) 181, 431
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 995
Bsp119I TTCGAA 1 cut(s) 242
Bsp143I GATC 3 cut(s) 337, 701, 967
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 2 cut(s) 370, 690
BspDI ATCGAT 1 cut(s) 711
BspFNI CGCG 1 cut(s) 1074
BspHI TCATGA 1 cut(s) 801
BspMAI CTGCAG 1 cut(s) 658
BspPI GGATC 1 cut(s) 332
BspT104I TTCGAA 1 cut(s) 242
BsrDI GCAATG 2 cut(s) 12, 862
BsrFI RCCGGY 1 cut(s) 521
BssAI RCCGGY 1 cut(s) 521
BssECI CCNNGG 5 cut(s) 257, 539, 995, 996, 1087
BssMI GATC 3 cut(s) 337, 701, 967
BssT1I CCWWGG 2 cut(s) 257, 1087
Bst2UI CCWGG 1 cut(s) 735
Bst4CI ACNGT 4 cut(s) 172, 472, 823, 939
Bst6I CTCTTC 1 cut(s) 918
BstBI TTCGAA 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 523, 611
BstDEI CTNAG 6 cut(s) 128, 378, 545, 698, 788, 932
BstFNI CGCG 1 cut(s) 1074
BstH2I RGCGCY 1 cut(s) 511
BstHHI GCGC 3 cut(s) 427, 510, 1076
BstKTI GATC 3 cut(s) 340, 704, 970
BstMAI GTCTC 1 cut(s) 459
BstMBI GATC 3 cut(s) 337, 701, 967
BstMWI GCNNNNNNNGC 2 cut(s) 550, 861
BstNI CCWGG 1 cut(s) 735
BstNSI RCATGY 1 cut(s) 613
BstSCI CCNGG 3 cut(s) 733, 994, 995
BstSFI CTRYAG 1 cut(s) 654
BstUI CGCG 1 cut(s) 1074
BstV1I GCAGC 2 cut(s) 668, 1088
Bsu15I ATCGAT 1 cut(s) 711
BsuRI GGCC 1 cut(s) 262
BsuTUI ATCGAT 1 cut(s) 711
BtsIMutI CAGTG 1 cut(s) 695
Cac8I GCNNGC 2 cut(s) 523, 611
CciI TCATGA 1 cut(s) 801
CfoI GCGC 3 cut(s) 427, 510, 1076
Cfr10I RCCGGY 1 cut(s) 521
Cfr9I CCCGGG 1 cut(s) 995
ClaI ATCGAT 1 cut(s) 711
Csp6I GTAC 2 cut(s) 811, 898
CviAII CATG 9 cut(s) 221, 287, 526, 610, 776, 802, 865, 874, 1101
CviQI GTAC 2 cut(s) 811, 898
DdeI CTNAG 6 cut(s) 128, 378, 545, 698, 788, 932
DpnI GATC 3 cut(s) 339, 703, 969
DpnII GATC 3 cut(s) 337, 701, 967
Eam1104I CTCTTC 1 cut(s) 918
EarI CTCTTC 1 cut(s) 918
Eco130I CCWWGG 2 cut(s) 257, 1087
Eco147I AGGCCT 1 cut(s) 262
Eco32I GATATC 1 cut(s) 709
Eco47III AGCGCT 1 cut(s) 509
Eco88I CYCGRG 1 cut(s) 995
EcoRII CCWGG 1 cut(s) 733
EcoRV GATATC 1 cut(s) 709
EcoT14I CCWWGG 2 cut(s) 257, 1087
ErhI CCWWGG 2 cut(s) 257, 1087
FaeI CATG 9 cut(s) 224, 290, 529, 613, 779, 805, 868, 877, 1104
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FaqI GGGAC 2 cut(s) 181, 431
FatI CATG 9 cut(s) 220, 286, 525, 609, 775, 801, 864, 873, 1100
FbaI TGATCA 1 cut(s) 967
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 110, 657, 1077
Fsp4HI GCNGC 3 cut(s) 110, 657, 1077
FspBI CTAG 5 cut(s) 113, 198, 234, 258, 767
GlaI GCGC 3 cut(s) 426, 509, 1075
GluI GCNGC 3 cut(s) 110, 657, 1077
HaeII RGCGCY 1 cut(s) 511
HaeIII GGCC 1 cut(s) 262
HapII CCGG 3 cut(s) 268, 522, 996
HhaI GCGC 3 cut(s) 427, 510, 1076
Hin1II CATG 9 cut(s) 224, 290, 529, 613, 779, 805, 868, 877, 1104
Hin6I GCGC 3 cut(s) 425, 508, 1074
HinP1I GCGC 3 cut(s) 425, 508, 1074
HinfI GANTC 4 cut(s) 92, 516, 604, 650
HpaII CCGG 3 cut(s) 268, 522, 996
HphI GGTGA 3 cut(s) 87, 1030, 1067
Hpy166II GTNNAC 2 cut(s) 157, 442
Hpy188I TCNGA 5 cut(s) 91, 184, 337, 642, 706
Hpy188III TCNNGA 6 cut(s) 206, 513, 562, 572, 802, 971
Hpy8I GTNNAC 2 cut(s) 157, 442
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 7 cut(s) 219, 293, 430, 459, 478, 888, 1042
HpyCH4III ACNGT 4 cut(s) 172, 472, 823, 939
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 4 cut(s) 220, 656, 913, 989
HpyF10VI GCNNNNNNNGC 2 cut(s) 550, 861
HpyF3I CTNAG 6 cut(s) 128, 378, 545, 698, 788, 932
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 9 cut(s) 224, 290, 529, 613, 779, 805, 868, 877, 1104
HspAI GCGC 3 cut(s) 425, 508, 1074
KroI GCCGGC 1 cut(s) 521
KroNI GCCGGC 1 cut(s) 523
Ksp22I TGATCA 1 cut(s) 967
Kzo9I GATC 3 cut(s) 337, 701, 967
LmnI GCTCC 4 cut(s) 826, 928, 1000, 1091
LpnPI CCDG 8 cut(s) 281, 535, 539, 557, 666, 720, 747, 1009
Lsp1109I GCAGC 2 cut(s) 668, 1088
LweI GCATC 2 cut(s) 364, 1011
MaeI CTAG 5 cut(s) 113, 198, 234, 258, 767
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 2 cut(s) 38, 1055
MalI GATC 3 cut(s) 339, 703, 969
MboI GATC 3 cut(s) 337, 701, 967
MboII GAAGA 3 cut(s) 595, 935, 1027
MluCI AATT 8 cut(s) 14, 43, 61, 330, 430, 565, 830, 1027
MmeI TCCRAC 1 cut(s) 69
MroNI GCCGGC 1 cut(s) 521
MseI TTAA 1 cut(s) 908
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 2 cut(s) 659, 1079
MspI CCGG 3 cut(s) 268, 522, 996
MspR9I CCNGG 3 cut(s) 735, 996, 997
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 1 cut(s) 735
MvnI CGCG 1 cut(s) 1074
MwoI GCNNNNNNNGC 2 cut(s) 550, 861
NaeI GCCGGC 1 cut(s) 523
NciI CCSGG 2 cut(s) 996, 997
NdeII GATC 3 cut(s) 337, 701, 967
NgoMIV GCCGGC 1 cut(s) 521
NlaIII CATG 9 cut(s) 224, 290, 529, 613, 779, 805, 868, 877, 1104
NmeAIII GCCGAG 1 cut(s) 520
NmuCI GTSAC 1 cut(s) 1055
NspI RCATGY 1 cut(s) 613
NspV TTCGAA 1 cut(s) 242
PaeI GCATGC 1 cut(s) 613
PagI TCATGA 1 cut(s) 801
PceI AGGCCT 1 cut(s) 262
PctI GAATGC 1 cut(s) 178
PdiI GCCGGC 1 cut(s) 523
PfeI GAWTC 4 cut(s) 92, 516, 604, 650
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 3 cut(s) 111, 658, 1078
Psp6I CCWGG 1 cut(s) 733
PspGI CCWGG 1 cut(s) 733
PstI CTGCAG 1 cut(s) 658
PvuII CAGCTG 2 cut(s) 659, 1079
RsaI GTAC 2 cut(s) 812, 899
RsaNI GTAC 2 cut(s) 811, 898
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 1 cut(s) 908
SatI GCNGC 3 cut(s) 110, 657, 1077
Sau3AI GATC 3 cut(s) 337, 701, 967
ScrFI CCNGG 3 cut(s) 735, 996, 997
SfaNI GCATC 2 cut(s) 364, 1011
SfcI CTRYAG 1 cut(s) 654
SfuI TTCGAA 1 cut(s) 242
SmaI CCCGGG 1 cut(s) 997
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
SphI GCATGC 1 cut(s) 613
Sse9I AATT 8 cut(s) 14, 43, 61, 330, 430, 565, 830, 1027
SseBI AGGCCT 1 cut(s) 262
SsiI CCGC 1 cut(s) 110
SspMI CTAG 5 cut(s) 113, 198, 234, 258, 767
StuI AGGCCT 1 cut(s) 262
StyD4I CCNGG 3 cut(s) 733, 994, 995
StyI CCWWGG 2 cut(s) 257, 1087
TaaI ACNGT 4 cut(s) 172, 472, 823, 939
TaiI ACGT 1 cut(s) 106
TaqI TCGA 4 cut(s) 242, 283, 474, 711
TasI AATT 8 cut(s) 14, 43, 61, 330, 430, 565, 830, 1027
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 4 cut(s) 92, 516, 604, 650
Tru1I TTAA 1 cut(s) 908
Tru9I TTAA 1 cut(s) 908
TscAI CASTG 1 cut(s) 702
TseFI GTSAC 1 cut(s) 1055
TseI GCWGC 2 cut(s) 656, 1076
Tsp45I GTSAC 1 cut(s) 1055
TspDTI ATGAA 1 cut(s) 969
TspGWI ACGGA 1 cut(s) 75
TspMI CCCGGG 1 cut(s) 995
TspRI CASTG 1 cut(s) 702
Van91I CCANNNNNTGG 1 cut(s) 347
XapI RAATTY 4 cut(s) 61, 330, 565, 1027
XceI RCATGY 1 cut(s) 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 1049
XmaI CCCGGG 1 cut(s) 995
XmaJI CCTAGG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 5 cut(s) 113, 198, 234, 258, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.