Rh7AG161300
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007506
Physical Location & Seq
Forward (+)
13592108 .. 13593583
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG161300.1

Sequence Viewer

Length: 939 bp
ATGGCAATAACTCATCCATGCTTTTCTGCTTCCTCGTTTTACATTTCTTGCTTCCCCAAAAATGCAACTCTTTCTTCACCTATCCAAGTTTCTCAACAAAGGGTCTATGATTTTAATATAATCCAAGCCTGTGCAATCCCCAAGGATACCATTGAACATTCTGGTAATGGGTTTGCTGGTTTTCCTCAAAAGCATTACTCTCATAAAGAATCAGGTACTAGTACCAGTAAAACTAAAACTCCACCTCCAAGGCCTCGCCGGATAATTCTGGTTCGGCACGGGCAGAGTGAAGGAAATGTGGATGAGGGAGTTTACACAAGAGTTTCTGATCCAAAGATTGGATTGACAGAGAAAGGTGTGGCAGATGCTGAGAAATGTGGGAGGAGGATCAGGGAGATGATTGAGGAAGACCAAGTGCATAATTGGAAGGTCTATTTTTATGTTTCTCCTTATAAAAGAGCAGTTGACACACTCAAGGGTTTAGGGAAATCATTTGAGCGGTCAAGAATTGCTGGCATGAGAGAAGAGCCTCGCTTAAGAGAGCAAGATTTTGGGAATTTTCAGGATAGGGAGAAGATGAGAGTGGAGAAAGCAATCCGTATGCGTTATGGTCGATTCTTTTACCGGTTTCCTAATGGGGAATCTGCAGCTGATGTTTATGACAGAATCACAGGATTCAGAGAAACACTGAAATCGGATATTGACGTGGGACGGTTTCAGCCACCAGGGCAGAGAAACCCGAACATAAACTTGGTGATAGTTTCACATGGCTTAACTCTGAGGGTGTTTCTGATGAGATGGTATAAATGGACAGTGGAGCAGTTTGAGAGACTGAACAACTTTAGTAATGGAAGCATGGTGGTTATGGAACGAGGCTATGGTGGAAGGAAAGTTTCAGAGATATCAGGAAACCCTACACTAATTACAAAAGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

312

Amino Acids

35.77

Weight (kDa)

9.71

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 88 - 299 4.2e-30 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 499
AciI CCGC 1 cut(s) 499
AclWI GGATC 2 cut(s) 323, 395
AcsI RAATTY 1 cut(s) 556
AfaI GTAC 2 cut(s) 217, 223
AfiI CCNNNNNNNGG 1 cut(s) 338
AflII CTTAAG 1 cut(s) 535
AgeI ACCGGT 1 cut(s) 624
AgsI TTSAA 1 cut(s) 155
AhlI ACTAGT 1 cut(s) 218
AjiI CACGTC 1 cut(s) 706
AjnI CCWGG 1 cut(s) 724
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
AluBI AGCT 1 cut(s) 650
AluI AGCT 1 cut(s) 650
Alw26I GTCTC 1 cut(s) 823
AlwI GGATC 2 cut(s) 323, 395
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 1 cut(s) 556
AsiGI ACCGGT 1 cut(s) 624
AsuHPI GGTGA 2 cut(s) 69, 766
BbsI GAAGAC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 659
BccI CCATC 1 cut(s) 792
BciT130I CCWGG 1 cut(s) 726
BciVI GTATCC 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 823
BcuI ACTAGT 1 cut(s) 218
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 645
BfrI CTTAAG 1 cut(s) 535
BfuI GTATCC 1 cut(s) 139
BglI GCCNNNNNGGC 1 cut(s) 727
BisI GCNGC 1 cut(s) 648
BlsI GCNGC 1 cut(s) 649
Bme1390I CCNGG 1 cut(s) 726
BmgBI CACGTC 1 cut(s) 706
BmrFI CCNGG 1 cut(s) 726
BmsI GCATC 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 458
BsaJI CCNNGG 3 cut(s) 141, 248, 725
BsaWI WCCGGW 1 cut(s) 624
BsaXI ACNNNNNCTCC 4 cut(s) 223, 229, 253, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse118I RCCGGY 1 cut(s) 624
Bse1I ACTGG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 3 cut(s) 141, 248, 725
BseGI GGATG 2 cut(s) 13, 307
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMII CTCAG 2 cut(s) 360, 770
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 659
BshFI GGCC 1 cut(s) 253
BshTI ACCGGT 1 cut(s) 624
BsiSI CCGG 2 cut(s) 259, 625
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 823
BsmFI GGGAC 1 cut(s) 723
BsnI GGCC 1 cut(s) 253
Bsp143I GATC 2 cut(s) 328, 387
BspACI CCGC 1 cut(s) 499
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 2 cut(s) 361, 771
BspMAI CTGCAG 1 cut(s) 649
BspPI GGATC 2 cut(s) 323, 395
BspQI GCTCTTC 1 cut(s) 519
BspTI CTTAAG 1 cut(s) 535
BsrBI CCGCTC 1 cut(s) 499
BsrFI RCCGGY 1 cut(s) 624
BsrI ACTGG 1 cut(s) 225
BssAI RCCGGY 1 cut(s) 624
BssECI CCNNGG 3 cut(s) 141, 248, 725
BssMI GATC 2 cut(s) 328, 387
BssT1I CCWWGG 2 cut(s) 141, 248
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 2 cut(s) 714, 814
Bst6I CTCTTC 1 cut(s) 519
BstAFI CTTAAG 1 cut(s) 535
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 2 cut(s) 369, 779
BstF5I GGATG 2 cut(s) 13, 307
BstKTI GATC 2 cut(s) 331, 390
BstMAI GTCTC 1 cut(s) 823
BstMBI GATC 2 cut(s) 328, 387
BstMWI GCNNNNNNNGC 1 cut(s) 727
BstNI CCWGG 1 cut(s) 726
BstSCI CCNGG 1 cut(s) 724
BstSFI CTRYAG 1 cut(s) 645
BstV1I GCAGC 1 cut(s) 659
BstV2I GAAGAC 1 cut(s) 414
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 253
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 2 cut(s) 13, 307
BtsIMutI CAGTG 2 cut(s) 686, 819
Cac8I GCNNGC 1 cut(s) 514
CaiI CAGNNNCTG 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 624
Csp6I GTAC 2 cut(s) 216, 222
CspAI ACCGGT 1 cut(s) 624
CviAII CATG 4 cut(s) 18, 517, 767, 856
CviJI RGCY 7 cut(s) 128, 253, 529, 650, 721, 771, 876
CviKI_1 RGCY 7 cut(s) 128, 253, 529, 650, 721, 771, 876
CviQI GTAC 2 cut(s) 216, 222
DdeI CTNAG 2 cut(s) 369, 779
DpnI GATC 2 cut(s) 330, 389
DpnII GATC 2 cut(s) 328, 387
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco130I CCWWGG 2 cut(s) 141, 248
Eco147I AGGCCT 1 cut(s) 253
Eco32I GATATC 1 cut(s) 903
EcoRII CCWGG 1 cut(s) 724
EcoRV GATATC 1 cut(s) 903
EcoT14I CCWWGG 2 cut(s) 141, 248
ErhI CCWWGG 2 cut(s) 141, 248
FaeI CATG 4 cut(s) 21, 520, 770, 859
FaqI GGGAC 1 cut(s) 723
FatI CATG 4 cut(s) 17, 516, 766, 855
Fnu4HI GCNGC 1 cut(s) 648
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 648
FspBI CTAG 1 cut(s) 219
GluI GCNGC 1 cut(s) 648
HaeIII GGCC 1 cut(s) 253
HapII CCGG 2 cut(s) 259, 625
Hin1II CATG 4 cut(s) 21, 520, 770, 859
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 5 cut(s) 209, 615, 641, 666, 675
HpaII CCGG 2 cut(s) 259, 625
HphI GGTGA 2 cut(s) 69, 766
Hpy166II GTNNAC 2 cut(s) 313, 466
Hpy188I TCNGA 6 cut(s) 328, 680, 697, 780, 792, 898
Hpy188III TCNNGA 3 cut(s) 504, 563, 906
Hpy8I GTNNAC 2 cut(s) 313, 466
HpyAV CCTTC 3 cut(s) 284, 421, 879
HpyCH4III ACNGT 2 cut(s) 714, 814
HpyCH4IV ACGT 1 cut(s) 705
HpyCH4V TGCA 4 cut(s) 65, 134, 418, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 727
HpyF3I CTNAG 2 cut(s) 369, 779
HpySE526I ACGT 1 cut(s) 705
Hsp92II CATG 4 cut(s) 21, 520, 770, 859
Kzo9I GATC 2 cut(s) 328, 387
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 1 cut(s) 817
Lsp1109I GCAGC 1 cut(s) 659
LweI GCATC 1 cut(s) 355
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 705
MalI GATC 2 cut(s) 330, 389
MbiI CCGCTC 1 cut(s) 499
MboI GATC 2 cut(s) 328, 387
MboII GAAGA 4 cut(s) 66, 419, 536, 586
MluCI AATT 6 cut(s) 264, 421, 507, 556, 921, 934
MseI TTAA 4 cut(s) 114, 536, 773, 937
MspA1I CMGCKG 1 cut(s) 650
MspCI CTTAAG 1 cut(s) 535
MspI CCGG 2 cut(s) 259, 625
MspR9I CCNGG 1 cut(s) 726
MvaI CCWGG 1 cut(s) 726
MwoI GCNNNNNNNGC 1 cut(s) 727
NdeII GATC 2 cut(s) 328, 387
NlaIII CATG 4 cut(s) 21, 520, 770, 859
PceI AGGCCT 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 519
PfeI GAWTC 5 cut(s) 209, 615, 641, 666, 675
PflMI CCANNNNNTGG 1 cut(s) 338
PinAI ACCGGT 1 cut(s) 624
PkrI GCNGC 1 cut(s) 649
PsiI TTATAA 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 724
PstI CTGCAG 1 cut(s) 649
PstNI CAGNNNCTG 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 2 cut(s) 217, 223
RsaNI GTAC 2 cut(s) 216, 222
SapI GCTCTTC 1 cut(s) 519
SaqAI TTAA 4 cut(s) 114, 536, 773, 937
SatI GCNGC 1 cut(s) 648
Sau3AI GATC 2 cut(s) 328, 387
ScrFI CCNGG 1 cut(s) 726
SetI ASST 7 cut(s) 82, 217, 247, 358, 432, 652, 708
SfaNI GCATC 1 cut(s) 355
SfcI CTRYAG 1 cut(s) 645
SmlI CTYRAG 2 cut(s) 473, 535
SmoI CTYRAG 2 cut(s) 473, 535
SpeI ACTAGT 1 cut(s) 218
Sse9I AATT 6 cut(s) 264, 421, 507, 556, 921, 934
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 1 cut(s) 499
SspMI CTAG 1 cut(s) 219
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 724
StyI CCWWGG 2 cut(s) 141, 248
TaaI ACNGT 2 cut(s) 714, 814
TaiI ACGT 1 cut(s) 708
TaqI TCGA 1 cut(s) 613
TasI AATT 6 cut(s) 264, 421, 507, 556, 921, 934
TfiI GAWTC 5 cut(s) 209, 615, 641, 666, 675
Tru1I TTAA 4 cut(s) 114, 536, 773, 937
Tru9I TTAA 4 cut(s) 114, 536, 773, 937
TscAI CASTG 2 cut(s) 693, 819
TseI GCWGC 1 cut(s) 647
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 2 cut(s) 693, 819
Van91I CCANNNNNTGG 1 cut(s) 338
Vha464I CTTAAG 1 cut(s) 535
XapI RAATTY 1 cut(s) 556
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.