Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007506

Physical Location & Seq

Genomic Coordinates Reverse (-)

13008171 .. 13009777

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g10380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCCATGACTCAATTTTGCTTGTCCGGTTCCTTGTGTTACAATCCTTGCTTTCGAAAAAATTCATATCTTTCTCTCACACTTCCCTCAGCTTCACCTAAATGTAAGCCACTAGAAAATGGGGTGCTTAGCTTCAACACAATACAATGCTCTGTGAGCCAGAATGGGACAATTGAGTATTCTGACAATGGGTTGGCTAGTTTTCCCGAAAAGCATTTGCATCGAAAGTCCGCTGCTAGTTTGAAATCTCCACCTCCTAGGCCTCGCCGGATAATCTTGGTTCGACATGGGCAGAGTGAAGGAAATGTAGATGAGAGTGCTTATACAAGAATTTCTGATCCGAAGATTGGACTAACAGAGAAAGGGTTGGCTGATGCTGAGCAATGTGGGAGGAGGATAAGGGAGATGATTGAGAGGGACAAAGTGCATAATTGGAAGGTGTACTTTTATGTGTCTCCTTATAGAAGGACAGTTCAAACACTGAAGGGTTTGGGTAGAGCGTTTGAGCGCTCAAGAATCGCCGGCATGCGAGAAGAGCCTCGGCTTAGAGAACAGGATTTCGGGAACTTTCAGGATAGGGAGAAGATGAGAGTAGAGAAAACGATTCGCATGCTTTATGGTCGTTTCTTTTATCGGTTTCCTAATGGGGAATCTGCAGCTGATGTTTATGATAGGATTACAGGATTTAGAGAAACGCTGAGAGCAGATATCGATATAGGACGATTTCAACCACCGGGCGAGAGAAATCCAAACATCAACTTGGTGCTAGTTTCACACGGTCTAACGCTCAGAGTGTTCCTCATGAGATGGTACAAATGGACAGTGGAGCAATTCGAGAGGCTGAATAACTTTGGCAATGGAAGCATGGTCGTTATGGAAAGAGGCTATGGTGGAAGGTACAGCTTGTTAGTGCATCACACTGAAGAGGAGCTAAGACAGTTTGGATTGACAGATGAAATGCTTGTTGATCAAGAATGGCAAAAATATGCAAAACCCGGGGAGCTGAACTACGATTGCCCGATGCTAAATTCCTTCTTCACCCACTTGGGTGATGATGACGATGATGGTGATCCTGCGGCCGTTAGCACGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

365

Amino Acids

41.97

Weight (kDa)

8.58

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007506)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02940
malus_domestica	MD06G1088600.v1.1 MD14G1109700.v1.1
prunus_persica	Prupe.5G104500_v2.0.a1 Prupe.5G104500_v2.0.a1
pyrus_communis	pycom06g08450 pycom14g10380
rosa_chinensis	RchiOBHm_Chr7g0196931 RchiOBHm_Chr7g0196941
rosa_laevigata	RLG00000003978 RLG00000003979
rosa_multiflora	Rmu_sc0001083.1_g000007 Rmu_sc0001083.1_g000008
rosa_roxburghii	Rroxscaffold_3G00258820
rosa_rugosa	Rorug07G0036800
rosa_samantha	Rh7AG161200 Rh7AG161300 Rh7BG163300 Rh7BG163400 Rh7CG169400 Rh7CG169500 Rh7DG162700 Rh7DG162800
rosa_wichuraiana	Rw7G014100 Rw7G014110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	231, 1076
AclWI	GGATC	2 cut(s)	332, 1064
AcoI	YGGCCR	2 cut(s)	3, 1077
AcsI	RAATTY	3 cut(s)	61, 330, 1027
AcuI	CTGAAG	2 cut(s)	503, 942
AfaI	GTAC	3 cut(s)	443, 812, 899
AfeI	AGCGCT	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	4 cut(s)	136, 244, 476, 728
AleI	CACNNNNGTG	1 cut(s)	1047
AluBI	AGCT	6 cut(s)	92, 132, 659, 903, 931, 1003
AluI	AGCT	6 cut(s)	92, 132, 659, 903, 931, 1003
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	2 cut(s)	332, 1064
Ama87I	CYCGRG	1 cut(s)	995
Aor51HI	AGCGCT	1 cut(s)	509
AoxI	GGCC	3 cut(s)	3, 260, 1077
ApeKI	GCWGC	2 cut(s)	233, 656
ApoI	RAATTY	3 cut(s)	61, 330, 1027
Asp700I	GAANNNNTTC	1 cut(s)	61
AspA2I	CCTAGG	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	510
AsuC2I	CCSGG	3 cut(s)	735, 996, 997
AsuHPI	GGTGA	4 cut(s)	87, 1030, 1061, 1079
AsuII	TTCGAA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	995
AvrII	CCTAGG	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	220, 668
BccI	CCATC	2 cut(s)	801, 1058
BceAI	ACGGC	1 cut(s)	1064
BcgI	CGANNNNNNTGC	4 cut(s)	203, 237, 592, 626
BclI	TGATCA	1 cut(s)	967
BcnI	CCSGG	3 cut(s)	735, 996, 997
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	6 cut(s)	113, 198, 237, 258, 767, 1093
BfmI	CTRYAG	1 cut(s)	654
BfoI	RGCGCY	1 cut(s)	511
BisI	GCNGC	3 cut(s)	234, 657, 1077
BlnI	CCTAGG	1 cut(s)	257
BlpI	GCTNAGC	2 cut(s)	128, 378
BlsI	GCNGC	3 cut(s)	235, 658, 1078
Bme1390I	CCNGG	3 cut(s)	735, 996, 997
BmeT110I	CYCGRG	1 cut(s)	995
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	3 cut(s)	735, 996, 997
BmsI	GCATC	4 cut(s)	229, 364, 922, 1011
BplI	GAGNNNNNCTC	2 cut(s)	783, 815
Bpu10I	CCTNAGC	1 cut(s)	88
Bpu1102I	GCTNAGC	2 cut(s)	128, 378
Bpu14I	TTCGAA	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	496
BpuMI	CCSGG	3 cut(s)	735, 996, 997
Bsa29I	ATCGAT	1 cut(s)	711
BsaBI	GATNNNNATC	1 cut(s)	1068
BsaJI	CCNNGG	4 cut(s)	257, 539, 995, 996
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse118I	RCCGGY	1 cut(s)	521
Bse3DI	GCAATG	2 cut(s)	389, 862
Bse8I	GATNNNNATC	1 cut(s)	1068
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	4 cut(s)	257, 539, 995, 996
BseJI	GATNNNNATC	1 cut(s)	1068
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	2 cut(s)	389, 862
BseMII	CTCAG	4 cut(s)	102, 369, 689, 802
BseRI	GAGGAG	2 cut(s)	406, 941
BseX3I	CGGCCG	1 cut(s)	1077
BseXI	GCAGC	2 cut(s)	220, 668
Bsh1285I	CGRYCG	1 cut(s)	1080
BshFI	GGCC	3 cut(s)	5, 262, 1079
BshVI	ATCGAT	1 cut(s)	711
BsiEI	CGRYCG	1 cut(s)	1080
BsiHKCI	CYCGRG	1 cut(s)	995
BsiSI	CCGG	5 cut(s)	27, 268, 522, 734, 996
BslFI	GGGAC	2 cut(s)	181, 431
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	2 cut(s)	181, 431
BsnI	GGCC	3 cut(s)	5, 262, 1079
BsoBI	CYCGRG	1 cut(s)	995
Bsp119I	TTCGAA	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	337, 967, 1069
Bsp1720I	GCTNAGC	2 cut(s)	128, 378
BspACI	CCGC	2 cut(s)	231, 1076
BspANI	GGCC	3 cut(s)	5, 262, 1079
BspCNI	CTCAG	4 cut(s)	101, 370, 690, 801
BspDI	ATCGAT	1 cut(s)	711
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	2 cut(s)	332, 1064
BspQI	GCTCTTC	1 cut(s)	528
BspT104I	TTCGAA	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	389, 862
BsrFI	RCCGGY	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	4 cut(s)	257, 539, 995, 996
BssMI	GATC	3 cut(s)	337, 967, 1069
BssT1I	CCWWGG	1 cut(s)	257
Bst4CI	ACNGT	4 cut(s)	472, 779, 823, 939
Bst6I	CTCTTC	2 cut(s)	528, 918
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	4 cut(s)	523, 527, 611, 1088
BstDEI	CTNAG	7 cut(s)	88, 128, 378, 545, 698, 788, 932
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	3 cut(s)	340, 970, 1072
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	3 cut(s)	337, 967, 1069
BstMCI	CGRYCG	1 cut(s)	1080
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 535, 861
BstNSI	RCATGY	2 cut(s)	529, 613
BstSCI	CCNGG	3 cut(s)	733, 994, 995
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	2 cut(s)	220, 668
BstZI	CGGCCG	1 cut(s)	1077
Bsu15I	ATCGAT	1 cut(s)	711
BsuRI	GGCC	3 cut(s)	5, 262, 1079
BsuTUI	ATCGAT	1 cut(s)	711
BtsIMutI	CAGTG	3 cut(s)	479, 828, 918
Cac8I	GCNNGC	4 cut(s)	523, 527, 611, 1088
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	1 cut(s)	510
Cfr10I	RCCGGY	1 cut(s)	521
Cfr9I	CCCGGG	1 cut(s)	995
ClaI	ATCGAT	1 cut(s)	711
Csp6I	GTAC	3 cut(s)	442, 811, 898
CviAII	CATG	6 cut(s)	7, 287, 526, 610, 802, 865
CviQI	GTAC	3 cut(s)	442, 811, 898
DdeI	CTNAG	7 cut(s)	88, 128, 378, 545, 698, 788, 932
DpnI	GATC	3 cut(s)	339, 969, 1071
DpnII	GATC	3 cut(s)	337, 967, 1069
EaeI	YGGCCR	2 cut(s)	3, 1077
EagI	CGGCCG	1 cut(s)	1077
Eam1104I	CTCTTC	2 cut(s)	528, 918
EarI	CTCTTC	2 cut(s)	528, 918
EclXI	CGGCCG	1 cut(s)	1077
Eco130I	CCWWGG	1 cut(s)	257
Eco147I	AGGCCT	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	709
Eco47III	AGCGCT	1 cut(s)	509
Eco52I	CGGCCG	1 cut(s)	1077
Eco57I	CTGAAG	2 cut(s)	503, 942
Eco88I	CYCGRG	1 cut(s)	995
EcoRV	GATATC	1 cut(s)	709
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	6 cut(s)	10, 290, 529, 613, 805, 868
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	2 cut(s)	181, 431
FatI	CATG	6 cut(s)	6, 286, 525, 609, 801, 864
FbaI	TGATCA	1 cut(s)	967
Fnu4HI	GCNGC	3 cut(s)	234, 657, 1077
Fsp4HI	GCNGC	3 cut(s)	234, 657, 1077
FspBI	CTAG	6 cut(s)	113, 198, 237, 258, 767, 1093
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	3 cut(s)	234, 657, 1077
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	3 cut(s)	5, 262, 1079
HapII	CCGG	5 cut(s)	27, 268, 522, 734, 996
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	6 cut(s)	10, 290, 529, 613, 805, 868
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HinfI	GANTC	4 cut(s)	10, 516, 604, 650
HpaII	CCGG	5 cut(s)	27, 268, 522, 734, 996
HphI	GGTGA	4 cut(s)	87, 1030, 1061, 1079
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	4 cut(s)	184, 337, 342, 791
Hpy188III	TCNNGA	7 cut(s)	206, 513, 562, 572, 802, 835, 971
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	6 cut(s)	293, 430, 459, 478, 888, 1042
HpyCH4III	ACNGT	4 cut(s)	472, 779, 823, 939
HpyCH4V	TGCA	5 cut(s)	220, 427, 656, 913, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 535, 861
HpyF3I	CTNAG	7 cut(s)	88, 128, 378, 545, 698, 788, 932
Hsp92II	CATG	6 cut(s)	10, 290, 529, 613, 805, 868
HspAI	GCGC	1 cut(s)	508
KroI	GCCGGC	1 cut(s)	521
KroNI	GCCGGC	1 cut(s)	523
Ksp22I	TGATCA	1 cut(s)	967
Kzo9I	GATC	3 cut(s)	337, 967, 1069
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	3 cut(s)	826, 928, 1000
Lsp1109I	GCAGC	2 cut(s)	220, 668
LweI	GCATC	4 cut(s)	229, 364, 922, 1011
MaeI	CTAG	6 cut(s)	113, 198, 237, 258, 767, 1093
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	3 cut(s)	339, 969, 1071
MboI	GATC	3 cut(s)	337, 967, 1069
MboII	GAAGA	5 cut(s)	355, 545, 595, 935, 1027
MfeI	CAATTG	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	14, 61, 171, 330, 430, 830, 1027
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	4
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	521
MroXI	GAANNNNTTC	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	100, 1047
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	233, 659
MspI	CCGG	5 cut(s)	27, 268, 522, 734, 996
MspR9I	CCNGG	3 cut(s)	735, 996, 997
MunI	CAATTG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	156, 535, 861
NaeI	GCCGGC	1 cut(s)	523
NciI	CCSGG	3 cut(s)	735, 996, 997
NdeII	GATC	3 cut(s)	337, 967, 1069
NgoMIV	GCCGGC	1 cut(s)	521
NlaIII	CATG	6 cut(s)	10, 290, 529, 613, 805, 868
NlaIV	GGNNCC	1 cut(s)	31
NmeAIII	GCCGAG	1 cut(s)	520
NspI	RCATGY	2 cut(s)	529, 613
NspV	TTCGAA	1 cut(s)	55
OliI	CACNNNNGTG	1 cut(s)	1047
PaeI	GCATGC	2 cut(s)	529, 613
PagI	TCATGA	1 cut(s)	801
PceI	AGGCCT	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	528
PdiI	GCCGGC	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	3 cut(s)	516, 604, 650
PkrI	GCNGC	3 cut(s)	235, 658, 1078
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	3 cut(s)	443, 812, 899
RsaNI	GTAC	3 cut(s)	442, 811, 898
RseI	CAYNNNNRTG	2 cut(s)	100, 1047
SapI	GCTCTTC	1 cut(s)	528
SatI	GCNGC	3 cut(s)	234, 657, 1077
Sau3AI	GATC	3 cut(s)	337, 967, 1069
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	735, 996, 997
SfaNI	GCATC	4 cut(s)	229, 364, 922, 1011
SfcI	CTRYAG	1 cut(s)	654
SfuI	TTCGAA	1 cut(s)	55
SmaI	CCCGGG	1 cut(s)	997
SmiMI	CAYNNNNRTG	2 cut(s)	100, 1047
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
SphI	GCATGC	2 cut(s)	529, 613
Sse9I	AATT	7 cut(s)	14, 61, 171, 330, 430, 830, 1027
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	2 cut(s)	231, 1076
SspMI	CTAG	6 cut(s)	113, 198, 237, 258, 767, 1093
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	3 cut(s)	733, 994, 995
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	4 cut(s)	472, 779, 823, 939
TaqI	TCGA	5 cut(s)	55, 223, 283, 711, 834
TasI	AATT	7 cut(s)	14, 61, 171, 330, 430, 830, 1027
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	1 cut(s)	1079
TfiI	GAWTC	3 cut(s)	516, 604, 650
TscAI	CASTG	3 cut(s)	486, 828, 925
TseI	GCWGC	2 cut(s)	233, 656
TspDTI	ATGAA	2 cut(s)	54, 969
TspMI	CCCGGG	1 cut(s)	995
TspRI	CASTG	3 cut(s)	486, 828, 925
XapI	RAATTY	3 cut(s)	61, 330, 1027
XceI	RCATGY	2 cut(s)	529, 613
XmaI	CCCGGG	1 cut(s)	995
XmaJI	CCTAGG	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	61
XspI	CTAG	6 cut(s)	113, 198, 237, 258, 767, 1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.