Rh7AG161200
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007506
Physical Location & Seq
Forward (+)
13589379 .. 13590735
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG161200.1

Sequence Viewer

Length: 540 bp
ATGAGAGAAGAACCTCGCCTAAGAGAGCAAGATTTTGGGAATTTTCAGGATAGGGAGAAGATGAGACTTGATAAAGCTATGCGTATGCTTTACGGTCGATTCTTTTACCGGTTTCCTAATGGGGAATCTGCAGCTGATGTTTATGATAGGATTACAGGATTCAGAGAAACATTGAAATCGGATATTGATGTGGGAAGGTTTCAGCCACCAGGGGAGAGAAATTCAAACATCAACTTGGTGATAGTTTCGCATGGCCTAACGCTGAGAGTGTTTCTGATGAGATGGTACAAGTGGACAGTGGAGCAGTTTGATGGCCTTAACAACTTTGGTAATGGAAGCATGGTTGTTATGGAAAGAGGCTACGGTGGAAGGTACAGCTTGTCAATACACCACACAGAAGAAGAGCTAAGAGAGTTTGGATTCTCGAACGAAATGATAGTTGATCAGGAATGGCAAAAATATGCAAGAATTGGAGAGCTGAACTATGATTGTCCAACTCTAAACTCCTTCTTCACCCACTTTGGTGAAGATGATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

179

Amino Acids

21.33

Weight (kDa)

5.46

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 2 - 125 5.2e-13 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 40, 220
AfaI GTAC 2 cut(s) 287, 374
AgeI ACCGGT 1 cut(s) 108
AgsI TTSAA 2 cut(s) 175, 225
AjnI CCWGG 1 cut(s) 208
AleI CACNNNNGTG 1 cut(s) 522
AluBI AGCT 5 cut(s) 77, 134, 378, 406, 478
AluI AGCT 5 cut(s) 77, 134, 378, 406, 478
Alw26I GTCTC 1 cut(s) 58
AoxI GGCC 2 cut(s) 253, 313
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 40, 220
AsiGI ACCGGT 1 cut(s) 108
AsuHPI GGTGA 3 cut(s) 250, 505, 536
BbvI GCAGC 1 cut(s) 143
BccI CCATC 2 cut(s) 276, 305
BciT130I CCWGG 1 cut(s) 210
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 58
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 108
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 255, 315
BshTI ACCGGT 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 97
BsiSI CCGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 2 cut(s) 255, 315
Bsp143I GATC 2 cut(s) 442, 532
BspANI GGCC 2 cut(s) 255, 315
BspCNI CTCAG 1 cut(s) 255
BspMAI CTGCAG 1 cut(s) 133
BspQI GCTCTTC 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 2 cut(s) 442, 532
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 3 cut(s) 95, 298, 365
Bst6I CTCTTC 1 cut(s) 396
BstDEI CTNAG 3 cut(s) 20, 263, 407
BstKTI GATC 2 cut(s) 445, 535
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 2 cut(s) 442, 532
BstMCI CGRYCG 1 cut(s) 97
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 143
BsuRI GGCC 2 cut(s) 255, 315
BtsIMutI CAGTG 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 108
Csp6I GTAC 2 cut(s) 286, 373
CspAI ACCGGT 1 cut(s) 108
CviAII CATG 2 cut(s) 251, 340
CviJI RGCY 9 cut(s) 77, 134, 205, 255, 315, 360, 378, 406, 478
CviKI_1 RGCY 9 cut(s) 77, 134, 205, 255, 315, 360, 378, 406, 478
CviQI GTAC 2 cut(s) 286, 373
DdeI CTNAG 3 cut(s) 20, 263, 407
DpnI GATC 2 cut(s) 444, 534
DpnII GATC 2 cut(s) 442, 532
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 208
FaeI CATG 2 cut(s) 254, 343
FaiI YATR 8 cut(s) 80, 86, 144, 252, 341, 350, 462, 486
FatI CATG 2 cut(s) 250, 339
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 2 cut(s) 255, 315
HapII CCGG 1 cut(s) 109
Hin1II CATG 2 cut(s) 254, 343
HinfI GANTC 4 cut(s) 99, 125, 159, 420
HpaII CCGG 1 cut(s) 109
HphI GGTGA 3 cut(s) 250, 505, 536
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 3 cut(s) 164, 181, 276
Hpy188III TCNNGA 3 cut(s) 47, 424, 446
Hpy8I GTNNAC 1 cut(s) 294
HpyAV CCTTC 3 cut(s) 189, 363, 517
HpyCH4III ACNGT 3 cut(s) 95, 298, 365
HpyCH4V TGCA 2 cut(s) 131, 464
HpyF3I CTNAG 3 cut(s) 20, 263, 407
Hsp92II CATG 2 cut(s) 254, 343
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 2 cut(s) 442, 532
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 6 cut(s) 32, 122, 141, 195, 222, 431
Lsp1109I GCAGC 1 cut(s) 143
MalI GATC 2 cut(s) 444, 534
MboI GATC 2 cut(s) 442, 532
MboII GAAGA 6 cut(s) 20, 70, 410, 413, 502, 539
MluCI AATT 3 cut(s) 40, 220, 468
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 2 cut(s) 24, 350
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 1 cut(s) 522
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
NdeII GATC 2 cut(s) 442, 532
NlaIII CATG 2 cut(s) 254, 343
OliI CACNNNNGTG 1 cut(s) 522
PciSI GCTCTTC 1 cut(s) 396
PfeI GAWTC 4 cut(s) 99, 125, 159, 420
PinAI ACCGGT 1 cut(s) 108
PkrI GCNGC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PstI CTGCAG 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 2 cut(s) 287, 374
RsaNI GTAC 2 cut(s) 286, 373
RseI CAYNNNNRTG 1 cut(s) 522
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 442, 532
ScrFI CCNGG 1 cut(s) 210
SetI ASST 8 cut(s) 16, 79, 136, 200, 374, 380, 408, 480
SfcI CTRYAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 522
Sse9I AATT 3 cut(s) 40, 220, 468
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 3 cut(s) 95, 298, 365
TaqI TCGA 2 cut(s) 97, 425
TasI AATT 3 cut(s) 40, 220, 468
TfiI GAWTC 4 cut(s) 99, 125, 159, 420
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 303
TseI GCWGC 1 cut(s) 131
TspRI CASTG 1 cut(s) 303
XapI RAATTY 2 cut(s) 40, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.