Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001083.1

Orthogroup ID

OG0007506

Physical Location & Seq

Genomic Coordinates Reverse (-)

57250 .. 59059

Gene Structure 1810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001083.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgactcatccatgcttttctgcttcctcgttttacatttcttgcttccccaaaaatgcaactctttcttcgcctatccaagtttctcaacaaagggtctatgattttaataaaatccaagcctgtgcaatccccagggatatcattgaacattctggtaatgggtttgctggttttcctcaaaagcattactctcataaagaatcaggtactggtaccagtaaaactaaaagtccacctccaaggcctcggcggataattctggttcggcatgggcagagtgaaggaaatgtggatgagggagtttacacaagagtttctgatccaaagattggattgacagagaaaggtgtggtagatgctgagaaatgtgggaggaggatcagggagatgattgaggaagaccaagtgcataattggaaggtctatttttatgtttctccttataaaagagcagttgacacactcaagggtttagggaaatcatttgagcgctcaagaattgttggcatgagagaagaacctcgcttaagagagcaagattttgggaattttcaggatagggagaagatgagagtggagaaagctatccgcatgcgttatggtcggttcttttaccggtttcctaatggggaatctgcagctgatgtttatgacagaatcacaggattcagagaaacactgaaatcggatattgacgtgggacggtttcagccaccagggcagagaaacccaaacatcaacttggtgatagtttcacatggcttaactctgagggtgtttctgatgagatggtataaatggacagtggagcagtttgagagactgaacaactttagtaatggaagcatggtggttatggaacgaggctatggtggaaggtacagtttgtcagtgcaccacgaagaagaagagctaagagagtttggattgtcagatgaaatgctaactgatcaggaatggcaaaaatatgcaaaacctggggagctgaactatgactgcccaacgctaaattccttcttcacccactttggtgaagacgatgatggtgcagctgaggaggaggagtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

357

Amino Acids

41.41

Weight (kDa)

6.82

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007506)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02940
malus_domestica	MD06G1088600.v1.1 MD14G1109700.v1.1
prunus_persica	Prupe.5G104500_v2.0.a1 Prupe.5G104500_v2.0.a1
pyrus_communis	pycom06g08450 pycom14g10380
rosa_chinensis	RchiOBHm_Chr7g0196931 RchiOBHm_Chr7g0196941
rosa_laevigata	RLG00000003978 RLG00000003979
rosa_multiflora	Rmu_sc0001083.1_g000007 Rmu_sc0001083.1_g000008
rosa_roxburghii	Rroxscaffold_3G00258820
rosa_rugosa	Rorug07G0036800
rosa_samantha	Rh7AG161200 Rh7AG161300 Rh7BG163300 Rh7BG163400 Rh7CG169400 Rh7CG169500 Rh7DG162700 Rh7DG162800
rosa_wichuraiana	Rw7G014100 Rw7G014110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
Acc65I	GGTACC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	332
AciI	CCGC	2 cut(s)	253, 592
AclWI	GGATC	2 cut(s)	317, 389
AcsI	RAATTY	2 cut(s)	550, 1012
AfaI	GTAC	4 cut(s)	211, 217, 884, 1070
AfeI	AGCGCT	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	332
AflII	CTTAAG	1 cut(s)	529
AgeI	ACCGGT	1 cut(s)	618
AgsI	TTSAA	1 cut(s)	149
AjiI	CACGTC	1 cut(s)	700
AjnI	CCWGG	3 cut(s)	134, 718, 979
AjuI	GAANNNNNNNTTGG	2 cut(s)	997, 1029
AleI	CACNNNNGTG	1 cut(s)	1032
AluBI	AGCT	5 cut(s)	587, 644, 916, 988, 1055
AluI	AGCT	5 cut(s)	587, 644, 916, 988, 1055
Alw21I	GWGCWC	1 cut(s)	900
Alw26I	GTCTC	1 cut(s)	817
Alw44I	GTGCAC	1 cut(s)	896
AlwI	GGATC	2 cut(s)	317, 389
AlwNI	CAGNNNCTG	1 cut(s)	212
Aor51HI	AGCGCT	1 cut(s)	494
AoxI	GGCC	1 cut(s)	245
ApaLI	GTGCAC	1 cut(s)	896
ApeKI	GCWGC	2 cut(s)	641, 1052
ApoI	RAATTY	2 cut(s)	550, 1012
AsiGI	ACCGGT	1 cut(s)	618
Asp718I	GGTACC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	495
AsuHPI	GGTGA	3 cut(s)	760, 1015, 1046
BaeGI	GKGCMC	1 cut(s)	900
BanI	GGYRCC	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	408, 1044
Bbv12I	GWGCWC	1 cut(s)	900
BbvCI	CCTCAGC	1 cut(s)	1056
BbvI	GCAGC	2 cut(s)	653, 1064
BccI	CCATC	2 cut(s)	786, 1040
BcgI	CGANNNNNNTGC	2 cut(s)	1031, 1065
BciT130I	CCWGG	3 cut(s)	136, 720, 981
BclI	TGATCA	1 cut(s)	952
BcoDI	GTCTC	1 cut(s)	817
BfaI	CTAG	1 cut(s)	1072
BfmI	CTRYAG	1 cut(s)	639
BfoI	RGCGCY	1 cut(s)	496
BfrI	CTTAAG	1 cut(s)	529
BglI	GCCNNNNNGGC	1 cut(s)	721
BisI	GCNGC	2 cut(s)	642, 1053
BlsI	GCNGC	2 cut(s)	643, 1054
BmcAI	AGTACT	1 cut(s)	1070
Bme1390I	CCNGG	3 cut(s)	136, 720, 981
BmgBI	CACGTC	1 cut(s)	700
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	3 cut(s)	136, 720, 981
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	408, 1044
Bpu10I	CCTNAGC	1 cut(s)	1056
BpuEI	CTTGAG	2 cut(s)	452, 481
BsaJI	CCNNGG	6 cut(s)	134, 135, 242, 248, 719, 980
BsaWI	WCCGGW	1 cut(s)	618
BsaXI	ACNNNNNCTCC	1 cut(s)	1052
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	618
Bse1I	ACTGG	2 cut(s)	217, 219
BseBI	CCWGG	3 cut(s)	136, 720, 981
BseDI	CCNNGG	6 cut(s)	134, 135, 242, 248, 719, 980
BseGI	GGATG	2 cut(s)	7, 301
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	3 cut(s)	354, 764, 1047
BseNI	ACTGG	2 cut(s)	217, 219
BseRI	GAGGAG	2 cut(s)	391, 1073
BseSI	GKGCMC	1 cut(s)	900
BseXI	GCAGC	2 cut(s)	653, 1064
BsgI	GTGCAG	1 cut(s)	1071
BshFI	GGCC	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	215
BshTI	ACCGGT	1 cut(s)	618
BsiHKAI	GWGCWC	1 cut(s)	900
BsiSI	CCGG	1 cut(s)	619
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	817
BsmFI	GGGAC	1 cut(s)	717
BsnI	GGCC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	900
Bsp143I	GATC	3 cut(s)	322, 381, 952
BspACI	CCGC	2 cut(s)	253, 592
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	3 cut(s)	355, 765, 1048
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	643
BspPI	GGATC	2 cut(s)	317, 389
BspQI	GCTCTTC	1 cut(s)	906
BspT107I	GGYRCC	1 cut(s)	215
BspTI	CTTAAG	1 cut(s)	529
BsrFI	RCCGGY	1 cut(s)	618
BsrI	ACTGG	2 cut(s)	217, 219
BssAI	RCCGGY	1 cut(s)	618
BssECI	CCNNGG	6 cut(s)	134, 135, 242, 248, 719, 980
BssMI	GATC	3 cut(s)	322, 381, 952
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	3 cut(s)	136, 720, 981
Bst4CI	ACNGT	3 cut(s)	708, 808, 887
Bst6I	CTCTTC	1 cut(s)	906
BstAFI	CTTAAG	1 cut(s)	529
BstC8I	GCNNGC	1 cut(s)	596
BstDEI	CTNAG	4 cut(s)	363, 773, 917, 1056
BstF5I	GGATG	2 cut(s)	7, 301
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	3 cut(s)	325, 384, 955
BstMAI	GTCTC	1 cut(s)	817
BstMBI	GATC	3 cut(s)	322, 381, 952
BstMWI	GCNNNNNNNGC	1 cut(s)	721
BstNI	CCWGG	3 cut(s)	136, 720, 981
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	3 cut(s)	134, 718, 979
BstSFI	CTRYAG	1 cut(s)	639
BstSLI	GKGCMC	1 cut(s)	900
BstV1I	GCAGC	2 cut(s)	653, 1064
BstV2I	GAAGAC	2 cut(s)	408, 1044
BsuRI	GGCC	1 cut(s)	247
BtrI	CACGTC	1 cut(s)	700
BtsCI	GGATG	2 cut(s)	7, 301
BtsIMutI	CAGTG	3 cut(s)	680, 813, 900
Cac8I	GCNNGC	1 cut(s)	596
CaiI	CAGNNNCTG	1 cut(s)	212
CfoI	GCGC	1 cut(s)	495
Cfr10I	RCCGGY	1 cut(s)	618
Csp6I	GTAC	4 cut(s)	210, 216, 883, 1069
CspAI	ACCGGT	1 cut(s)	618
CviAII	CATG	6 cut(s)	12, 272, 511, 595, 761, 850
CviQI	GTAC	4 cut(s)	210, 216, 883, 1069
DdeI	CTNAG	4 cut(s)	363, 773, 917, 1056
DpnI	GATC	3 cut(s)	324, 383, 954
DpnII	GATC	3 cut(s)	322, 381, 952
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
EciI	GGCGGA	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	242
Eco147I	AGGCCT	1 cut(s)	247
Eco32I	GATATC	1 cut(s)	142
Eco47III	AGCGCT	1 cut(s)	494
EcoRII	CCWGG	3 cut(s)	134, 718, 979
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	6 cut(s)	15, 275, 514, 598, 764, 853
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	6 cut(s)	11, 271, 510, 594, 760, 849
FbaI	TGATCA	1 cut(s)	952
Fnu4HI	GCNGC	2 cut(s)	642, 1053
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	2 cut(s)	642, 1053
FspBI	CTAG	1 cut(s)	1072
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	2 cut(s)	642, 1053
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	1 cut(s)	247
HapII	CCGG	1 cut(s)	619
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	6 cut(s)	15, 275, 514, 598, 764, 853
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	5 cut(s)	4, 203, 635, 660, 669
HpaII	CCGG	1 cut(s)	619
HphI	GGTGA	3 cut(s)	760, 1015, 1046
Hpy166II	GTNNAC	4 cut(s)	236, 307, 460, 898
Hpy188I	TCNGA	6 cut(s)	322, 674, 691, 774, 786, 937
Hpy188III	TCNNGA	3 cut(s)	498, 557, 956
Hpy8I	GTNNAC	4 cut(s)	236, 307, 460, 898
HpyAV	CCTTC	4 cut(s)	278, 415, 873, 1027
HpyCH4III	ACNGT	3 cut(s)	708, 808, 887
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	7 cut(s)	59, 128, 412, 641, 898, 974, 1052
HpyF10VI	GCNNNNNNNGC	1 cut(s)	721
HpyF3I	CTNAG	4 cut(s)	363, 773, 917, 1056
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	6 cut(s)	15, 275, 514, 598, 764, 853
HspAI	GCGC	1 cut(s)	493
KpnI	GGTACC	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	952
Kzo9I	GATC	3 cut(s)	322, 381, 952
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	2 cut(s)	811, 985
Lsp1109I	GCAGC	2 cut(s)	653, 1064
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	1072
MaeII	ACGT	1 cut(s)	699
MalI	GATC	3 cut(s)	324, 383, 954
MboI	GATC	3 cut(s)	322, 381, 952
MboII	GAAGA	9 cut(s)	60, 413, 530, 580, 917, 920, 923, 1012, 1049
MhlI	GDGCHC	1 cut(s)	900
MluCI	AATT	5 cut(s)	258, 415, 501, 550, 1012
MseI	TTAA	3 cut(s)	108, 530, 767
MslI	CAYNNNNRTG	1 cut(s)	1032
MspA1I	CMGCKG	2 cut(s)	644, 1055
MspCI	CTTAAG	1 cut(s)	529
MspI	CCGG	1 cut(s)	619
MspR9I	CCNGG	3 cut(s)	136, 720, 981
MvaI	CCWGG	3 cut(s)	136, 720, 981
MwoI	GCNNNNNNNGC	1 cut(s)	721
NdeII	GATC	3 cut(s)	322, 381, 952
NlaIII	CATG	6 cut(s)	15, 275, 514, 598, 764, 853
NlaIV	GGNNCC	1 cut(s)	217
NmeAIII	GCCGAG	1 cut(s)	229
NspI	RCATGY	1 cut(s)	598
OliI	CACNNNNGTG	1 cut(s)	1032
PaeI	GCATGC	1 cut(s)	598
PasI	CCCWGGG	1 cut(s)	135
PceI	AGGCCT	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	906
PfeI	GAWTC	4 cut(s)	203, 635, 660, 669
PflMI	CCANNNNNTGG	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	618
PkrI	GCNGC	2 cut(s)	643, 1054
PsiI	TTATAA	1 cut(s)	447
Psp6I	CCWGG	3 cut(s)	134, 718, 979
PspGI	CCWGG	3 cut(s)	134, 718, 979
PspN4I	GGNNCC	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	643
PstNI	CAGNNNCTG	1 cut(s)	212
PvuII	CAGCTG	2 cut(s)	644, 1055
RsaI	GTAC	4 cut(s)	211, 217, 884, 1070
RsaNI	GTAC	4 cut(s)	210, 216, 883, 1069
RseI	CAYNNNNRTG	1 cut(s)	1032
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	3 cut(s)	108, 530, 767
SatI	GCNGC	2 cut(s)	642, 1053
Sau3AI	GATC	3 cut(s)	322, 381, 952
ScaI	AGTACT	1 cut(s)	1070
ScrFI	CCNGG	3 cut(s)	136, 720, 981
SduI	GDGCHC	1 cut(s)	900
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	639
SmiMI	CAYNNNNRTG	1 cut(s)	1032
SmlI	CTYRAG	3 cut(s)	467, 496, 529
SmoI	CTYRAG	3 cut(s)	467, 496, 529
SphI	GCATGC	1 cut(s)	598
Sse9I	AATT	5 cut(s)	258, 415, 501, 550, 1012
SseBI	AGGCCT	1 cut(s)	247
SsiI	CCGC	2 cut(s)	253, 592
SspMI	CTAG	1 cut(s)	1072
StuI	AGGCCT	1 cut(s)	247
StyD4I	CCNGG	3 cut(s)	134, 718, 979
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	3 cut(s)	708, 808, 887
TaiI	ACGT	1 cut(s)	702
TasI	AATT	5 cut(s)	258, 415, 501, 550, 1012
TatI	WGTACW	1 cut(s)	1068
TfiI	GAWTC	4 cut(s)	203, 635, 660, 669
Tru1I	TTAA	3 cut(s)	108, 530, 767
Tru9I	TTAA	3 cut(s)	108, 530, 767
TscAI	CASTG	3 cut(s)	687, 813, 900
TseI	GCWGC	2 cut(s)	641, 1052
TspDTI	ATGAA	1 cut(s)	954
TspRI	CASTG	3 cut(s)	687, 813, 900
Van91I	CCANNNNNTGG	1 cut(s)	332
Vha464I	CTTAAG	1 cut(s)	529
VneI	GTGCAC	1 cut(s)	896
XapI	RAATTY	2 cut(s)	550, 1012
XceI	RCATGY	1 cut(s)	598
XspI	CTAG	1 cut(s)	1072
ZrmI	AGTACT	1 cut(s)	1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.