RchiOBHm_Chr7g0196931
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007506
Physical Location & Seq
Forward (+)
14892294 .. 14894696
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17617

Sequence Viewer

Length: 1065 bp
ATGGCAGTGACTCAATTGTGCTCTTCTGCTTCCTTGTTTTACATGTCCTGCTTCCCCAAAAATGCGACTCTTTCTTCACCTATCCAATTTTCTCAACAAAGGGTTGTTAGTTTTAATACAGTTATATGCTGTGCGAGCCCCAGGGATACTATTGAACATTCTGGTAATGGGTTTGGTGGTCTTCCTGAAAAACTGTACTCTCATAGAGAATCAGGTACTAGTAGTAGTACTAGTACTAGTATTAATAAAGTTGCACCTCCAAGGCCTCGCCGGATCATTTTGGTTCGGCATGGGCAGAGTGAAGGAAATGTGGATGAGAGCGTCTACACTAGAGTTTCTGATCCAAAGATCCGATTGACCGAGAAAGGTATGGCTGATGCTGAGGAATGCGGGAAGAGGATCAGGGAGATGATTGAAAAAGACAAAGTGCATGATTGGAAGGTCTACTTCTATGTGTCTCCTTATAGAAGAACAGTTGAAACACTCAAGGGGTTAGGGAAAGCATTTGAGCGCTCAAGAATTGCTGGCATGAGAGAAGAACCTCGCCTAAGAGAGCAAGATTTTGGGAATTTTCAGGATAGGGAGAAGATGAGACTTGATAAAGCTATGCGTATGCTTTACGGTCGATTCTTTTACCGGTTTCCTAATGGGGAATCTGCAGCTGATGTTTATGATAGGATTACAGGATTCAGAGAAACATTGAAATCGGATATTGATGTGGGAAGGTTTCAGCCACCAGGGGAGAGAAATTCAAACATCAACTTGGTGATAGTTTCGCATGGCCTAACGCTGAGAGTGTTTCTGATGAGATGGTACAAGTGGACAGTGGAGCAGTTTGATGGCCTCAACAACTTTGGTAATGGAAGCATGGTTGTTATGGAAAGAGGCTACGGTGGAAGGTACAGCTTGTCAATACACCACACAGAAGAAGAGCTAAGAGAGTTTGGATTCTCGAACGAAATGATAGTTGATCAGGAATGGCAAAAATATGCAAGAATTGGAGAGCTGAACTATGATTGTCCAACGCTAAACTCCTTCTTCACCCACTTTGGTGAAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

354

Amino Acids

40.83

Weight (kDa)

8.14

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 92 - 300 1.8e-28 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 324, 444
AciI CCGC 1 cut(s) 390
AclWI GGATC 4 cut(s) 281, 335, 343, 407
AcsI RAATTY 2 cut(s) 568, 748
AfaI GTAC 6 cut(s) 197, 217, 229, 235, 815, 902
AfeI AGCGCT 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 42
AgeI ACCGGT 1 cut(s) 636
AgsI TTSAA 5 cut(s) 155, 416, 479, 703, 753
AhlI ACTAGT 3 cut(s) 218, 230, 236
AjnI CCWGG 2 cut(s) 140, 736
AleI CACNNNNGTG 1 cut(s) 1050
AluBI AGCT 5 cut(s) 605, 662, 906, 934, 1006
AluI AGCT 5 cut(s) 605, 662, 906, 934, 1006
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 2 cut(s) 462, 586
AlwI GGATC 4 cut(s) 281, 335, 343, 407
Aor51HI AGCGCT 1 cut(s) 512
AoxI GGCC 3 cut(s) 263, 781, 841
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 2 cut(s) 568, 748
AseI ATTAAT 1 cut(s) 243
AsiGI ACCGGT 1 cut(s) 636
AspLEI GCGC 1 cut(s) 513
AsuHPI GGTGA 4 cut(s) 69, 778, 1033, 1064
BanII GRGCYC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 23
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 671
BccI CCATC 2 cut(s) 804, 833
BciT130I CCWGG 2 cut(s) 142, 738
BciVI GTATCC 1 cut(s) 139
BclI TGATCA 1 cut(s) 970
BcoDI GTCTC 2 cut(s) 462, 586
BcuI ACTAGT 3 cut(s) 218, 230, 236
BfaI CTAG 4 cut(s) 219, 231, 237, 330
BfmI CTRYAG 1 cut(s) 657
BfoI RGCGCY 1 cut(s) 514
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 1 cut(s) 660
BlsI GCNGC 1 cut(s) 661
BmcAI AGTACT 2 cut(s) 229, 235
Bme1390I CCNGG 2 cut(s) 142, 738
BmrFI CCNGG 2 cut(s) 142, 738
BmsI GCATC 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 381
BpuEI CTTGAG 2 cut(s) 470, 499
BsaJI CCNNGG 4 cut(s) 140, 141, 260, 737
BsaWI WCCGGW 1 cut(s) 636
Bse118I RCCGGY 1 cut(s) 636
BseBI CCWGG 2 cut(s) 142, 738
BseDI CCNNGG 4 cut(s) 140, 141, 260, 737
BseGI GGATG 1 cut(s) 319
BseMII CTCAG 2 cut(s) 372, 782
BseXI GCAGC 1 cut(s) 671
Bsh1285I CGRYCG 1 cut(s) 625
BshFI GGCC 3 cut(s) 265, 783, 843
BshTI ACCGGT 1 cut(s) 636
BsiEI CGRYCG 1 cut(s) 625
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 2 cut(s) 271, 637
BsmAI GTCTC 2 cut(s) 462, 586
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 3 cut(s) 265, 783, 843
Bsp1286I GDGCHC 2 cut(s) 23, 140
Bsp143I GATC 5 cut(s) 273, 340, 348, 399, 970
BspACI CCGC 1 cut(s) 390
BspANI GGCC 3 cut(s) 265, 783, 843
BspCNI CTCAG 2 cut(s) 373, 783
BspMAI CTGCAG 1 cut(s) 661
BspPI GGATC 4 cut(s) 281, 335, 343, 407
BspQI GCTCTTC 2 cut(s) 28, 924
BsrFI RCCGGY 1 cut(s) 636
BssAI RCCGGY 1 cut(s) 636
BssECI CCNNGG 4 cut(s) 140, 141, 260, 737
BssMI GATC 5 cut(s) 273, 340, 348, 399, 970
BssT1I CCWWGG 1 cut(s) 260
Bst2UI CCWGG 2 cut(s) 142, 738
Bst4CI ACNGT 6 cut(s) 121, 195, 475, 623, 826, 893
Bst6I CTCTTC 3 cut(s) 28, 389, 924
BstC8I GCNNGC 2 cut(s) 136, 526
BstDEI CTNAG 4 cut(s) 381, 548, 791, 935
BstF5I GGATG 1 cut(s) 319
BstH2I RGCGCY 1 cut(s) 514
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 5 cut(s) 276, 343, 351, 402, 973
BstMAI GTCTC 2 cut(s) 462, 586
BstMBI GATC 5 cut(s) 273, 340, 348, 399, 970
BstMCI CGRYCG 1 cut(s) 625
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 2 cut(s) 142, 738
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 140, 736
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 1 cut(s) 671
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 3 cut(s) 265, 783, 843
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 831
Cac8I GCNNGC 2 cut(s) 136, 526
CfoI GCGC 1 cut(s) 513
Cfr10I RCCGGY 1 cut(s) 636
CseI GACGC 1 cut(s) 310
Csp6I GTAC 6 cut(s) 196, 216, 228, 234, 814, 901
CspAI ACCGGT 1 cut(s) 636
CviAII CATG 6 cut(s) 43, 290, 431, 529, 779, 868
CviQI GTAC 6 cut(s) 196, 216, 228, 234, 814, 901
DdeI CTNAG 4 cut(s) 381, 548, 791, 935
DpnI GATC 5 cut(s) 275, 342, 350, 401, 972
DpnII GATC 5 cut(s) 273, 340, 348, 399, 970
Eam1104I CTCTTC 3 cut(s) 28, 389, 924
EarI CTCTTC 3 cut(s) 28, 389, 924
Eco130I CCWWGG 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 140
Eco47III AGCGCT 1 cut(s) 512
EcoRII CCWGG 2 cut(s) 140, 736
EcoT14I CCWWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 6 cut(s) 46, 293, 434, 532, 782, 871
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FatI CATG 6 cut(s) 42, 289, 430, 528, 778, 867
FauI CCCGC 1 cut(s) 383
FbaI TGATCA 1 cut(s) 970
FblI GTMKAC 2 cut(s) 324, 444
Fnu4HI GCNGC 1 cut(s) 660
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 660
FspBI CTAG 4 cut(s) 219, 231, 237, 330
GlaI GCGC 1 cut(s) 512
GluI GCNGC 1 cut(s) 660
HaeII RGCGCY 1 cut(s) 514
HaeIII GGCC 3 cut(s) 265, 783, 843
HapII CCGG 2 cut(s) 271, 637
HgaI GACGC 1 cut(s) 310
HhaI GCGC 1 cut(s) 513
Hin1II CATG 6 cut(s) 46, 293, 434, 532, 782, 871
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HinfI GANTC 7 cut(s) 10, 67, 209, 627, 653, 687, 948
HpaII CCGG 2 cut(s) 271, 637
HphI GGTGA 4 cut(s) 69, 778, 1033, 1064
Hpy166II GTNNAC 3 cut(s) 325, 445, 822
Hpy188I TCNGA 5 cut(s) 340, 353, 692, 709, 804
Hpy188III TCNNGA 5 cut(s) 185, 516, 575, 952, 974
Hpy8I GTNNAC 3 cut(s) 325, 445, 822
HpyAV CCTTC 5 cut(s) 296, 433, 717, 891, 1045
HpyCH4III ACNGT 6 cut(s) 121, 195, 475, 623, 826, 893
HpyCH4V TGCA 4 cut(s) 254, 430, 659, 992
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 4 cut(s) 381, 548, 791, 935
Hsp92II CATG 6 cut(s) 46, 293, 434, 532, 782, 871
HspAI GCGC 1 cut(s) 511
Ksp22I TGATCA 1 cut(s) 970
Kzo9I GATC 5 cut(s) 273, 340, 348, 399, 970
LguI GCTCTTC 2 cut(s) 28, 924
LmnI GCTCC 1 cut(s) 829
Lsp1109I GCAGC 1 cut(s) 671
LweI GCATC 1 cut(s) 367
MaeI CTAG 4 cut(s) 219, 231, 237, 330
MaeIII GTNAC 1 cut(s) 7
MalI GATC 5 cut(s) 275, 342, 350, 401, 972
MboI GATC 5 cut(s) 273, 340, 348, 399, 970
MfeI CAATTG 1 cut(s) 14
MflI RGATCY 1 cut(s) 348
MhlI GDGCHC 2 cut(s) 23, 140
MluCI AATT 6 cut(s) 14, 86, 519, 568, 748, 996
MlyI GAGTC 2 cut(s) 4, 61
MmeI TCCRAC 1 cut(s) 1046
MnlI CCTC 7 cut(s) 267, 276, 376, 390, 552, 854, 878
MseI TTAA 2 cut(s) 114, 243
MslI CAYNNNNRTG 1 cut(s) 1050
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 2 cut(s) 271, 637
MspR9I CCNGG 2 cut(s) 142, 738
MunI CAATTG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 2 cut(s) 142, 738
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeII GATC 5 cut(s) 273, 340, 348, 399, 970
NlaIII CATG 6 cut(s) 46, 293, 434, 532, 782, 871
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 46
OliI CACNNNNGTG 1 cut(s) 1050
PasI CCCWGGG 1 cut(s) 141
PceI AGGCCT 1 cut(s) 265
PciI ACATGT 1 cut(s) 42
PciSI GCTCTTC 2 cut(s) 28, 924
PctI GAATGC 1 cut(s) 392
PfeI GAWTC 5 cut(s) 209, 627, 653, 687, 948
PinAI ACCGGT 1 cut(s) 636
PkrI GCNGC 1 cut(s) 661
PleI GAGTC 2 cut(s) 4, 61
PpsI GAGTC 2 cut(s) 4, 61
PscI ACATGT 1 cut(s) 42
PshBI ATTAAT 1 cut(s) 243
Psp6I CCWGG 2 cut(s) 140, 736
PspGI CCWGG 2 cut(s) 140, 736
PstI CTGCAG 1 cut(s) 661
PsuI RGATCY 1 cut(s) 348
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 6 cut(s) 197, 217, 229, 235, 815, 902
RsaNI GTAC 6 cut(s) 196, 216, 228, 234, 814, 901
RseI CAYNNNNRTG 1 cut(s) 1050
SapI GCTCTTC 2 cut(s) 28, 924
SaqAI TTAA 2 cut(s) 114, 243
SatI GCNGC 1 cut(s) 660
Sau3AI GATC 5 cut(s) 273, 340, 348, 399, 970
ScaI AGTACT 2 cut(s) 229, 235
SchI GAGTC 2 cut(s) 4, 61
ScrFI CCNGG 2 cut(s) 142, 738
SduI GDGCHC 2 cut(s) 23, 140
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 1050
SmlI CTYRAG 2 cut(s) 485, 514
SmoI CTYRAG 2 cut(s) 485, 514
SpeI ACTAGT 3 cut(s) 218, 230, 236
Sse9I AATT 6 cut(s) 14, 86, 519, 568, 748, 996
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 1 cut(s) 390
SspMI CTAG 4 cut(s) 219, 231, 237, 330
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 2 cut(s) 140, 736
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 6 cut(s) 121, 195, 475, 623, 826, 893
TaqI TCGA 2 cut(s) 625, 953
TaqII GACCGA 1 cut(s) 374
TasI AATT 6 cut(s) 14, 86, 519, 568, 748, 996
TatI WGTACW 3 cut(s) 195, 227, 233
TfiI GAWTC 5 cut(s) 209, 627, 653, 687, 948
Tru1I TTAA 2 cut(s) 114, 243
Tru9I TTAA 2 cut(s) 114, 243
TscAI CASTG 2 cut(s) 12, 831
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 1 cut(s) 7
TspRI CASTG 2 cut(s) 12, 831
VspI ATTAAT 1 cut(s) 243
XapI RAATTY 2 cut(s) 568, 748
XceI RCATGY 1 cut(s) 46
XmiI GTMKAC 2 cut(s) 324, 444
XspI CTAG 4 cut(s) 219, 231, 237, 330
ZrmI AGTACT 2 cut(s) 229, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.