FvH4_5g07361

Telomere length regulation protein TEL2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004200
Physical Location & Seq
Forward (+)
4308040 .. 4310307
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07361.t1

Sequence Viewer

Length: 996 bp
ATGGAGAATGGCTCCAAAAGACGAATCGAAGTAGAAATCAAAGGTGGAAATTCACAGGTGCTGTTGGCGAGCAGTGCAGGGAGCAGTGTTGAAGCTCCTTCGGCTGTGGAGAGAAGCGAGTGGTGGAAGGCGTTTTACCGTGGAGCTGCATTCAGGACATTTGCCAGGGTTTTGTTGACAGCACGGAAACATGTGTATGATGTTTTCTTTGTTAACGGCCTTGTCACTGAGGTTGTTCAGGTTCTGGTCCCTTGTCTACAGCAAAGTGGGAGCGGCGATGTCGATGTCAATGCTGTTCAATCCAATACTGAAAGGTTGCTCGTACTTAGCTTGCTTGAAAATAAGGTGGTGCTCCAGATGGCTAGAGAATTTGGTGGCCCTTTCCAGTCTGAAGAAAATCTCAAGTCAACTGTATCTAGAGTAGCACAGATTGTTGCATCTATACCTGACAAAGCAAAATTGAGAGCCCCAACTTCTCTTTCGTCACATTTGTTCTTCAAGGAAGTTACCATTCAGCAGCTTTCTCTGGCACAAGAAGGAAATTTGGAGATGTTAGATGAAGGAGCTTTCTATAATACTGACATGAACTGGACCTTGCTGTTTGTCGGGGGAACATTTTCTCGTATATGTCGACGTGGATCTGTAGGTAGGCTTCAGAGCCCTAATCATATAGTACGGAAGATGGCTAGCAGTGTTGCTTTAGTTTTCTCCAAGGTGATTGATCCAAAAAATCCACTGTATCTTGATGACAGCCTAACTGAGGAGACCATCGACTGGGAATTTGGGTTGTCTACCCCTAAGAAAGGGGCAGCCCTGGGAACCTCAAGTAGCCTAGAAGAAGACGAGATCATTGATCCAGTTATACTGAATTATGATTCAGTCTCTGATGAAGATGACAACGATGATGTTAGTGTGAATTCTGATGTCTCAAGTGACTCATCTTTACAGCCATATGATTTATCAGATGATGACGCAGATTTGAAAAGAAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04150 map03460 map04150
Pfam Domains
Protein Families
Telomere_reg-2

Protein Analysis

332

Amino Acids

36.46

Weight (kDa)

4.74

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TELO2_ARM PF25320 213 - 259 1.4e-19 TELO2 ARM repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 774
AccBSI CCGCTC 1 cut(s) 273
AccI GTMKAC 3 cut(s) 256, 631, 791
AciI CCGC 1 cut(s) 273
AclWI GGATC 3 cut(s) 646, 716, 848
AcsI RAATTY 6 cut(s) 49, 368, 541, 779, 916, 989
AcuI CTGAAG 2 cut(s) 411, 638
AfaI GTAC 2 cut(s) 324, 675
AfiI CCNNNNNNNGG 3 cut(s) 760, 774, 803
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 5 cut(s) 92, 299, 338, 499, 982
AjiI CACGTC 1 cut(s) 635
AjnI CCWGG 2 cut(s) 164, 813
AjuI GAANNNNNNNTTGG 2 cut(s) 463, 495
AluBI AGCT 5 cut(s) 95, 146, 330, 520, 566
AluI AGCT 5 cut(s) 95, 146, 330, 520, 566
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 3 cut(s) 758, 886, 931
AlwI GGATC 3 cut(s) 646, 716, 848
AlwNI CAGNNNCTG 3 cut(s) 61, 244, 884
AoxI GGCC 2 cut(s) 217, 376
ApeKI GCWGC 3 cut(s) 146, 517, 809
ApoI RAATTY 6 cut(s) 49, 368, 541, 779, 916, 989
ArsI GACNNNNNNTTYG 2 cut(s) 764, 796
Asp700I GAANNNNTTC 1 cut(s) 616
AspS9I GGNCC 3 cut(s) 247, 377, 591
AsuHPI GGTGA 1 cut(s) 727
AsuNHI GCTAGC 1 cut(s) 686
AvaII GGWCC 2 cut(s) 247, 591
BanII GRGCYC 2 cut(s) 469, 662
BarI GAAGNNNNNNTAC 4 cut(s) 119, 151, 636, 668
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 3 cut(s) 133, 529, 821
BccI CCATC 3 cut(s) 352, 676, 776
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BciT130I CCWGG 2 cut(s) 166, 815
BcoDI GTCTC 3 cut(s) 758, 886, 931
BfaI CTAG 4 cut(s) 363, 417, 687, 833
BfmI CTRYAG 2 cut(s) 257, 642
BisI GCNGC 4 cut(s) 147, 274, 518, 810
BlsI GCNGC 4 cut(s) 148, 275, 519, 811
Bme1390I CCNGG 2 cut(s) 166, 815
Bme18I GGWCC 2 cut(s) 247, 591
BmgBI CACGTC 1 cut(s) 635
BmgT120I GGNCC 3 cut(s) 247, 377, 591
BmiI GGNNCC 3 cut(s) 13, 249, 820
BmrFI CCNGG 2 cut(s) 166, 815
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 1 cut(s) 446
BmtI GCTAGC 1 cut(s) 690
BmuI ACTGGG 1 cut(s) 784
BpiI GAAGAC 1 cut(s) 846
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 338
BpuEI CTTGAG 3 cut(s) 386, 808, 913
BsaI GGTCTC 1 cut(s) 758
BsaJI CCNNGG 5 cut(s) 139, 165, 711, 813, 814
Bsc4I CCNNNNNNNGG 3 cut(s) 760, 774, 803
Bse1I ACTGG 4 cut(s) 385, 593, 779, 857
BseBI CCWGG 2 cut(s) 166, 815
BseDI CCNNGG 5 cut(s) 139, 165, 711, 813, 814
BseLI CCNNNNNNNGG 3 cut(s) 760, 774, 803
BseMII CTCAG 2 cut(s) 219, 750
BseNI ACTGG 4 cut(s) 385, 593, 779, 857
BseRI GAGGAG 1 cut(s) 776
BseXI GCAGC 3 cut(s) 133, 529, 821
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 2 cut(s) 219, 378
BsiHKAI GWGCWC 1 cut(s) 354
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 3 cut(s) 760, 774, 803
BsmAI GTCTC 3 cut(s) 758, 886, 931
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 2 cut(s) 219, 378
Bso31I GGTCTC 1 cut(s) 758
Bsp1286I GDGCHC 3 cut(s) 354, 469, 662
Bsp143I GATC 4 cut(s) 638, 721, 846, 853
BspACI CCGC 1 cut(s) 273
BspANI GGCC 2 cut(s) 219, 378
BspCNI CTCAG 2 cut(s) 220, 751
BspLI GGNNCC 3 cut(s) 13, 249, 820
BspOI GCTAGC 1 cut(s) 690
BspPI GGATC 3 cut(s) 646, 716, 848
BspTNI GGTCTC 1 cut(s) 758
BsrBI CCGCTC 1 cut(s) 273
BsrI ACTGG 4 cut(s) 385, 593, 779, 857
BssECI CCNNGG 5 cut(s) 139, 165, 711, 813, 814
BssMI GATC 4 cut(s) 638, 721, 846, 853
BssT1I CCWWGG 1 cut(s) 711
Bst2UI CCWGG 2 cut(s) 166, 815
Bst4CI ACNGT 3 cut(s) 140, 412, 738
BstC8I GCNNGC 3 cut(s) 70, 332, 688
BstDEI CTNAG 4 cut(s) 228, 326, 759, 798
BstDSI CCRYGG 1 cut(s) 139
BstENI CCTNNNNNAGG 2 cut(s) 758, 801
BstKTI GATC 4 cut(s) 641, 724, 849, 856
BstMAI GTCTC 3 cut(s) 758, 886, 931
BstMBI GATC 4 cut(s) 638, 721, 846, 853
BstMWI GCNNNNNNNGC 2 cut(s) 74, 101
BstNI CCWGG 2 cut(s) 166, 815
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 2 cut(s) 164, 813
BstSFI CTRYAG 2 cut(s) 257, 642
BstV1I GCAGC 3 cut(s) 133, 529, 821
BstV2I GAAGAC 1 cut(s) 846
BstX2I RGATCY 1 cut(s) 638
BstYI RGATCY 1 cut(s) 638
BsuRI GGCC 2 cut(s) 219, 378
BtgI CCRYGG 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 291
BtrI CACGTC 1 cut(s) 635
BtsI GCAGTG 3 cut(s) 79, 91, 697
BtsIMutI CAGTG 5 cut(s) 79, 91, 225, 697, 734
Cac8I GCNNGC 3 cut(s) 70, 332, 688
CaiI CAGNNNCTG 3 cut(s) 61, 244, 884
Cfr13I GGNCC 3 cut(s) 247, 377, 591
CseI GACGC 1 cut(s) 980
Csp6I GTAC 2 cut(s) 323, 674
CviAII CATG 2 cut(s) 191, 583
CviQI GTAC 2 cut(s) 323, 674
DdeI CTNAG 4 cut(s) 228, 326, 759, 798
DpnI GATC 4 cut(s) 640, 723, 848, 855
DpnII GATC 4 cut(s) 638, 721, 846, 853
Eco130I CCWWGG 1 cut(s) 711
Eco24I GRGCYC 2 cut(s) 469, 662
Eco31I GGTCTC 1 cut(s) 758
Eco47I GGWCC 2 cut(s) 247, 591
Eco57I CTGAAG 2 cut(s) 411, 638
EcoNI CCTNNNNNAGG 2 cut(s) 758, 801
EcoRI GAATTC 1 cut(s) 916
EcoRII CCWGG 2 cut(s) 164, 813
EcoT14I CCWWGG 1 cut(s) 711
EcoT38I GRGCYC 2 cut(s) 469, 662
ErhI CCWWGG 1 cut(s) 711
FaeI CATG 2 cut(s) 194, 586
FaqI GGGAC 1 cut(s) 233
FatI CATG 2 cut(s) 190, 582
FauNDI CATATG 1 cut(s) 952
FblI GTMKAC 3 cut(s) 256, 631, 791
Fnu4HI GCNGC 4 cut(s) 147, 274, 518, 810
FriOI GRGCYC 2 cut(s) 469, 662
Fsp4HI GCNGC 4 cut(s) 147, 274, 518, 810
FspBI CTAG 4 cut(s) 363, 417, 687, 833
GluI GCNGC 4 cut(s) 147, 274, 518, 810
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 2 cut(s) 219, 378
HgaI GACGC 1 cut(s) 980
Hin1II CATG 2 cut(s) 194, 586
HincII GTYRAC 4 cut(s) 177, 214, 408, 632
HindII GTYRAC 4 cut(s) 177, 214, 408, 632
HinfI GANTC 3 cut(s) 24, 875, 935
HpaI GTTAAC 1 cut(s) 214
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 6 cut(s) 177, 214, 257, 408, 632, 792
Hpy188I TCNGA 5 cut(s) 391, 657, 886, 922, 964
Hpy188III TCNNGA 4 cut(s) 154, 355, 417, 743
Hpy8I GTNNAC 6 cut(s) 177, 214, 257, 408, 632, 792
Hpy99I CGWCG 1 cut(s) 636
HpyAV CCTTC 4 cut(s) 108, 121, 530, 554
HpyCH4III ACNGT 3 cut(s) 140, 412, 738
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 3 cut(s) 77, 149, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 101
HpyF3I CTNAG 4 cut(s) 228, 326, 759, 798
HpySE526I ACGT 1 cut(s) 634
Hsp92II CATG 2 cut(s) 194, 586
KspAI GTTAAC 1 cut(s) 214
Kzo9I GATC 4 cut(s) 638, 721, 846, 853
LmnI GCTCC 7 cut(s) 17, 81, 100, 143, 270, 357, 563
Lsp1109I GCAGC 3 cut(s) 133, 529, 821
LweI GCATC 1 cut(s) 446
MaeI CTAG 4 cut(s) 363, 417, 687, 833
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 4 cut(s) 223, 483, 505, 932
MalI GATC 4 cut(s) 640, 723, 848, 855
MbiI CCGCTC 1 cut(s) 273
MboI GATC 4 cut(s) 638, 721, 846, 853
MboII GAAGA 6 cut(s) 404, 487, 691, 848, 851, 902
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 3 cut(s) 354, 469, 662
MluCI AATT 8 cut(s) 49, 368, 458, 541, 779, 868, 916, 989
MlyI GAGTC 1 cut(s) 929
MnlI CCTC 3 cut(s) 223, 754, 832
MroXI GAANNNNTTC 1 cut(s) 616
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 166, 815
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 2 cut(s) 166, 815
MwoI GCNNNNNNNGC 2 cut(s) 74, 101
NdeI CATATG 1 cut(s) 952
NdeII GATC 4 cut(s) 638, 721, 846, 853
NheI GCTAGC 1 cut(s) 686
NlaIII CATG 2 cut(s) 194, 586
NlaIV GGNNCC 3 cut(s) 13, 249, 820
NmuCI GTSAC 3 cut(s) 223, 483, 932
NspI RCATGY 1 cut(s) 194
PasI CCCWGGG 1 cut(s) 814
PciI ACATGT 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 628
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 2 cut(s) 24, 875
PflMI CCANNNNNTGG 1 cut(s) 774
PkrI GCNGC 4 cut(s) 148, 275, 519, 811
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
PscI ACATGT 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 164, 813
PspGI CCWGG 2 cut(s) 164, 813
PspN4I GGNNCC 3 cut(s) 13, 249, 820
PspPI GGNCC 3 cut(s) 247, 377, 591
PstNI CAGNNNCTG 3 cut(s) 61, 244, 884
PsuI RGATCY 1 cut(s) 638
RsaI GTAC 2 cut(s) 324, 675
RsaNI GTAC 2 cut(s) 323, 674
RseI CAYNNNNRTG 1 cut(s) 195
SalI GTCGAC 1 cut(s) 630
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 4 cut(s) 147, 274, 518, 810
Sau3AI GATC 4 cut(s) 638, 721, 846, 853
Sau96I GGNCC 3 cut(s) 247, 377, 591
SchI GAGTC 1 cut(s) 929
ScrFI CCNGG 2 cut(s) 166, 815
SduI GDGCHC 3 cut(s) 354, 469, 662
SfaNI GCATC 1 cut(s) 446
SfcI CTRYAG 2 cut(s) 257, 642
SinI GGWCC 2 cut(s) 247, 591
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 3 cut(s) 401, 823, 928
SmoI CTYRAG 3 cut(s) 401, 823, 928
Sse9I AATT 8 cut(s) 49, 368, 458, 541, 779, 868, 916, 989
SsiI CCGC 1 cut(s) 273
SspMI CTAG 4 cut(s) 363, 417, 687, 833
StyD4I CCNGG 2 cut(s) 164, 813
StyI CCWWGG 1 cut(s) 711
TaaI ACNGT 3 cut(s) 140, 412, 738
TaiI ACGT 1 cut(s) 637
TaqI TCGA 4 cut(s) 27, 282, 631, 771
TasI AATT 8 cut(s) 49, 368, 458, 541, 779, 868, 916, 989
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 2 cut(s) 24, 875
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 5 cut(s) 79, 91, 232, 697, 741
TseFI GTSAC 3 cut(s) 223, 483, 932
TseI GCWGC 3 cut(s) 146, 517, 809
Tsp45I GTSAC 3 cut(s) 223, 483, 932
TspDTI ATGAA 3 cut(s) 573, 599, 903
TspGWI ACGGA 2 cut(s) 199, 691
TspRI CASTG 5 cut(s) 79, 91, 232, 697, 741
Van91I CCANNNNNTGG 1 cut(s) 774
VpaK11BI GGWCC 2 cut(s) 247, 591
XagI CCTNNNNNAGG 2 cut(s) 758, 801
XapI RAATTY 6 cut(s) 49, 368, 541, 779, 916, 989
XbaI TCTAGA 1 cut(s) 416
XceI RCATGY 1 cut(s) 194
XmiI GTMKAC 3 cut(s) 256, 631, 791
XmnI GAANNNNTTC 1 cut(s) 616
XspI CTAG 4 cut(s) 363, 417, 687, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.