Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004200

Physical Location & Seq

Genomic Coordinates Reverse (-)

29995486 .. 30002712

Gene Structure 7227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG136700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2865 bp

ATGCTTTTGCGTTGTGTGCTGGTTCCTAGTGTTGAAGCTCCTTCAGCTGATGAGAGAAGCGAGTTGCGGAAGACTTTTTATCGAGGAGCTGCATTCAGAACATTTGCTCGGGTTTTGTTAACTGATGTCGTTTCCAATTGGCTTGCTTGTTTCCCGTTTTCAGCACGGAAACATGTGTATGACGTCTTCTTTGTTAACGGACTTGCCACTGAGGTTGTTCAGATTTTGGTCCCTTGTCTACAGCAAAATGGAAGTGGTGATGTTGATGTCAACGCTGTTCACTCCAATACTGAAAGGTTACTTGTACTTTGCTTGGTTGAAAATAATGGGGTGCTCCAGATGGCTAGAGAATTTGGTGGCTCTTTCCAGTCTGAAGATTATACATATGAAAATCTCATGTCAACTGTATCTAGAGTGGCACAGATTGTTGCATCCATACCTGACAAAGCACAATTGAGAGCCCCGACTTCACTTTCAGCACATTTGTTCTTCAAGCAAGTTACCATTCAGCTTCTTTCTCTAGCAGAAGAAGGGAATATGGAGATATTAGATGGCTTCCGTGAAAGTAACATGAATGGGACCTTACTGTTTGTTGGGGAAACATTTTCTCGTATATGTCGACGTGGATCTGTAGATGTGCTTTTAAGTGAAATAATCCCAAGGATTCTTAGACATGTCCGGAGTTTGTCATCATCAACTATGGACTCACTAGGTTCAGATGTTCTGGAATCAGACCCTGGTTCCCAATTTTGGTTGAATCTTATTCAAGCAATCAAAGATTCATATGCTGTGGAAAGAATGTCTGAGCAACTTTTACATCAGCTTGCAACTGAACAAGTGGGTGATATTGAAGCTTACTGGATTCTTTGGCTATTATTTCATCGGGTTTTCAAGAGCCAAATATCAGCGAGGTCCATGTTTACTGACAAGTTTTTAGTCTGGAAAGTATTTCCTATTTGTTGCCTTCGATGGATCCTTCAATTTTCCGTCCTTGAATGCGCACCAGATTCTAATTCACTTGCTAAAGGTCATAATACCCGCAATTTCTTAGACACGTTACAGCATCTGGTAGCAGTATGGTCTAAAAGGGAGTTTGTACAATCAGCCCCAGTCAAGCAGCAAATATATGTAACTGCTGGTGTAGGCCTTTCCCTAGAGCAGATGTCTAAGGAGGAATTAGATGAGACAAAGGATGTGCTGCATTCAATTCTCCAAGGAGTGAGCTGTAGGCTTGAAAGCCCTAATCATTTAGTACGGAAGATGGCTAGCTCTGTTGCTTTAGTTTTCTCCAAGGTGATTGATCCAAAAAATCCTCTATACCTTGATGACAACCTAACTGGGGAGACTATTGACTGGGAATTTGGGTTGTCTACTCCTAAGAAAGGTACCCTGGGAACCTCAAGTTGCTTAGAAGAAGGTATTAACAAATCCAAAATATCTAAAACCTCAGTGCTGGAAGATGGCTTAAACCACAAAGCCAGTGGGAAGAGTAAAAGTAGGAAATTATCTGAAACAAAGTTGGTTGATCCAGACGAGATCATTGATCCTGTTACACTGAATTATGATTCCGTCTCTGATGAAGATGACAACAATGATAGTGAGGATTCTGATGTCTCAAGTGACTCATCTTTACAGCCATATGATTTATCAGATGATGACACAGATTTGAAAAGGAAATTTTCACAGTTGGTTGATGTAGTTGGGGCACTTCGGAAATCTGATGATGCTGATGGGGTGGAGAAGGCTCTTGAAGTTTCTGAAAAACTTGTGCAAGCATCACCTGATGAGCTTAAGTTTGTATCAAGTGATCTCGTGAGAACCCTGGTACAGGTTCGTTGCTCTGACTTGGCTATAGAAGGTGAGGAAGATTCAGCTGAAGACAAGAGACAAAGAACATTGGCCGCTTTGCTTGTCACGTGTCCATTGGAGTCTCTTGAAACTTTAAACAAACTACTATATTCTCCTAATGTGGATGTCAGTCAGCGCTTACTGATTCTTGATGTAATGACCGAGGGGGCTGAGGAGCTTGCTGATACTAAAATTATGAAGGCTAAACATCAGACTAGGGCCCTCATATCGACCACATCAGAGACACAAGCTTGGTTCCTGCCTAGTGACATAGGTCCTCCTGGAGCTGGTGCCTGGAAAGAGATTTCAGAAACAAATTCTTTACTGAACTGGACAAATCGTTATGAGAGGGAACTTCCCCCAAAACCTGGTCAGATTAGGAGAGGAAAGACACGTCAATGGAGCCTTAGATCAGCCAATGCACCAAAAAGCCAAATAGAGTGGTCCCATAATAAGTTTCCAGTGTATGCAGCAGCATTTATGCTTCCTGCCATGCAGGGGTTTGATAAGAGAAGGCAAGGTGTTGACCTTCTTGATAGAGATTTTATTGTCCTGGGAAAACTCATCTATATGCTCGGTGTCTGTATGAAATGTGCAGCCATGCATCCGGAAGCATCTGCTCTGGATGGCCCTCTTCTAGATATGCAAAGCTCCAGGGAGATTTGTTTTCACAAGGAAGCATTTGTCAGAAGATCTACCCTTTTTGCAGCTTCATGCATATTGCTATCACTTCACCCCTCTTATGTAGCAACCTCCTTAGTTGAAGGCAATACTGAAATTTCTAACGGACTTGAATGGATTCGCACATGGGCCCTTCATGTAACTGAATCAGACACAGATAGAGAGTGTTATTCGATGGCTATGAAATGTCTGCAACTCCATGCTGAAATGGCCCTGCAAGCTTCTCGAGCACTAGAGTCGGCACAAAGCACGTCCAATGTAAAGAATGTTGTTGGGATTCCGTCCAATCTATCCAAGGGAACAATTATCATCCCCCACTCCAATGTGAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04150 map03460 map04150

Pfam Domains

Protein Families

Telomere_reg-2

Protein Analysis

954

Amino Acids

106.37

Weight (kDa)

5.33

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TELO2_ARM	PF25320	212 - 452	7.9e-125	TELO2 ARM repeat domain
Telomere_reg-2	PF10193	562 - 673	3.6e-20	Telomere length regulation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48470 AT3G48470
fragaria_vesca	FvH4_5g07361 FvH4_5g07460 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490
malus_domestica	MD06G1154000.v1.1 MD14G1163600.v1.1
prunus_persica	Prupe.5G157000_v2.0.a1
pyrus_communis	pycom14g13630
rosa_chinensis	RchiOBHm_Chr7g0191161
rosa_laevigata	RLG00000004472
rosa_multiflora	Rmu_co8075350.1_g000001 Rmu_sc0000701.1_g000017 Rmu_sc0001585.1_g000002 Rmu_sc0016007.1_g000006 Rmu_sc0039738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263990
rosa_rugosa	Rorug06G0509300
rosa_samantha	Rh1AG145200 Rh1AG325800 Rh1CG136700 Rh1CG136800 Rh1DG151800 Rh5CG463100 Rh7AG116500 Rh7BG118700 Rh7CG121400 Rh7DG119700
rosa_wichuraiana	Rw1G028870 Rw7G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
Acc16I	TGCGCA	1 cut(s)	1000
Acc65I	GGTACC	1 cut(s)	1385
AccB1I	GGYRCC	2 cut(s)	1385, 2138
AccB7I	CCANNNNNTGG	1 cut(s)	2216
AccI	GTMKAC	3 cut(s)	238, 619, 1370
AccIII	TCCGGA	2 cut(s)	678, 2455
AciI	CCGC	3 cut(s)	67, 1039, 1902
AclWI	GGATC	6 cut(s)	634, 967, 980, 1295, 1520, 1538
AcoI	YGGCCR	1 cut(s)	1899
AcsI	RAATTY	5 cut(s)	350, 1358, 1676, 2164, 2625
AcuI	CTGAAG	3 cut(s)	27, 393, 1896
AcvI	CACGTG	1 cut(s)	1917
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	5 cut(s)	306, 1098, 1254, 1387, 1827
AfeI	AGCGCT	1 cut(s)	1985
AfiI	CCNNNNNNNGG	7 cut(s)	750, 1339, 1382, 1828, 2135, 2216, 2346
AflII	CTTAAG	1 cut(s)	1790
AflIII	ACRYGT	5 cut(s)	172, 673, 1053, 1916, 2240
AjiI	CACGTC	3 cut(s)	623, 2243, 2781
AjnI	CCWGG	8 cut(s)	736, 1389, 1821, 2128, 2141, 2215, 2400, 2501
Alw21I	GWGCWC	2 cut(s)	336, 2761
Alw26I	GTCTC	7 cut(s)	1178, 1337, 1576, 1618, 1879, 1935, 2084
AlwI	GGATC	6 cut(s)	634, 967, 980, 1295, 1520, 1538
AlwNI	CAGNNNCTG	2 cut(s)	737, 1066
Ama87I	CYCGRG	2 cut(s)	108, 2754
Aor13HI	TCCGGA	2 cut(s)	678, 2455
Aor51HI	AGCGCT	1 cut(s)	1985
AoxI	GGCC	6 cut(s)	1144, 1899, 2067, 2476, 2658, 2739
ApaI	GGGCCC	2 cut(s)	2071, 2662
ApeKI	GCWGC	7 cut(s)	89, 1117, 1198, 2318, 2321, 2444, 2555
ApoI	RAATTY	5 cut(s)	350, 1358, 1676, 2164, 2625
ArsI	GACNNNNNNTTYG	4 cut(s)	173, 205, 1343, 1375
Asp700I	GAANNNNTTC	1 cut(s)	2646
Asp718I	GGTACC	1 cut(s)	1385
AspLEI	GCGC	2 cut(s)	1001, 1986
AsuHPI	GGTGA	6 cut(s)	269, 854, 1306, 1770, 1871, 2573
AsuNHI	GCTAGC	1 cut(s)	1265
AvaI	CYCGRG	2 cut(s)	108, 2754
AvaII	GGWCC	5 cut(s)	229, 579, 912, 2123, 2292
BaeGI	GKGCMC	3 cut(s)	1708, 2071, 2662
BamHI	GGATCC	1 cut(s)	972
BanI	GGYRCC	2 cut(s)	1385, 2138
BanII	GRGCYC	3 cut(s)	463, 2071, 2662
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
BauI	CACGAG	1 cut(s)	1811
BbrPI	CACGTG	1 cut(s)	1917
BbsI	GAAGAC	3 cut(s)	77, 178, 1884
Bbv12I	GWGCWC	2 cut(s)	336, 2761
BbvCI	CCTCAGC	1 cut(s)	2019
BbvI	GCAGC	7 cut(s)	76, 1129, 1185, 2330, 2333, 2456, 2567
BccI	CCATC	8 cut(s)	334, 545, 963, 1255, 1454, 1724, 2468, 2698
BcgI	CGANNNNNNTGC	4 cut(s)	2735, 2748, 2769, 2782
BciT130I	CCWGG	8 cut(s)	738, 1391, 1823, 2130, 2143, 2217, 2402, 2503
BcoDI	GTCTC	7 cut(s)	1178, 1337, 1576, 1618, 1879, 1935, 2084
BfmI	CTRYAG	4 cut(s)	239, 630, 1225, 1851
BfoI	RGCGCY	1 cut(s)	1987
BfrI	CTTAAG	1 cut(s)	1790
BglII	AGATCT	1 cut(s)	2540
BisI	GCNGC	8 cut(s)	90, 1118, 1199, 1902, 2319, 2322, 2445, 2556
BlsI	GCNGC	8 cut(s)	91, 1119, 1200, 1903, 2320, 2323, 2446, 2557
Bme1390I	CCNGG	8 cut(s)	738, 1391, 1823, 2130, 2143, 2217, 2402, 2503
Bme18I	GGWCC	5 cut(s)	229, 579, 912, 2123, 2292
BmeT110I	CYCGRG	2 cut(s)	108, 2754
BmgBI	CACGTC	3 cut(s)	623, 2243, 2781
BmrFI	CCNGG	8 cut(s)	738, 1391, 1823, 2130, 2143, 2217, 2402, 2503
BmrI	ACTGGG	3 cut(s)	1103, 1347, 1363
BmsI	GCATC	6 cut(s)	440, 1072, 1714, 1784, 2461, 2471
BmtI	GCTAGC	1 cut(s)	1269
BmuI	ACTGGG	3 cut(s)	1103, 1347, 1363
BoxI	GACNNNNGTC	1 cut(s)	2121
BpiI	GAAGAC	3 cut(s)	77, 178, 1884
BpmI	CTGGAG	3 cut(s)	320, 2151, 2485
Bpu10I	CCTNAGC	1 cut(s)	2019
BpuEI	CTTGAG	2 cut(s)	1384, 1600
BsaAI	YACGTR	1 cut(s)	1917
BsaHI	GRCGYC	1 cut(s)	183
BsaWI	WCCGGW	2 cut(s)	678, 2455
Bsc4I	CCNNNNNNNGG	7 cut(s)	750, 1339, 1382, 1828, 2135, 2216, 2346
Bse1I	ACTGG	8 cut(s)	367, 863, 1109, 1342, 1358, 1479, 2183, 2309
BseAI	TCCGGA	2 cut(s)	678, 2455
BseBI	CCWGG	8 cut(s)	738, 1391, 1823, 2130, 2143, 2217, 2402, 2503
BseGI	GGATG	6 cut(s)	431, 1198, 1978, 2452, 2479, 2838
BseLI	CCNNNNNNNGG	7 cut(s)	750, 1339, 1382, 1828, 2135, 2216, 2346
BseMII	CTCAG	4 cut(s)	201, 795, 1461, 2010
BseNI	ACTGG	8 cut(s)	367, 863, 1109, 1342, 1358, 1479, 2183, 2309
BseRI	GAGGAG	2 cut(s)	99, 2036
BseSI	GKGCMC	3 cut(s)	1708, 2071, 2662
BseXI	GCAGC	7 cut(s)	76, 1129, 1185, 2330, 2333, 2456, 2567
BsgI	GTGCAG	1 cut(s)	2463
BshFI	GGCC	6 cut(s)	1146, 1901, 2069, 2478, 2660, 2741
BshNI	GGYRCC	2 cut(s)	1385, 2138
BsiHKAI	GWGCWC	2 cut(s)	336, 2761
BsiHKCI	CYCGRG	2 cut(s)	108, 2754
BsiSI	CCGG	2 cut(s)	679, 2456
BslFI	GGGAC	3 cut(s)	215, 592, 2278
BslI	CCNNNNNNNGG	7 cut(s)	750, 1339, 1382, 1828, 2135, 2216, 2346
BsmAI	GTCTC	7 cut(s)	1178, 1337, 1576, 1618, 1879, 1935, 2084
BsmBI	CGTCTC	1 cut(s)	1576
BsmFI	GGGAC	3 cut(s)	215, 592, 2278
BsmI	GAATGC	3 cut(s)	92, 1001, 1201
BsnI	GGCC	6 cut(s)	1146, 1901, 2069, 2478, 2660, 2741
BsoBI	CYCGRG	2 cut(s)	108, 2754
Bsp120I	GGGCCC	2 cut(s)	2067, 2658
Bsp1286I	GDGCHC	6 cut(s)	336, 463, 1708, 2071, 2662, 2761
Bsp13I	TCCGGA	2 cut(s)	678, 2455
Bsp1407I	TGTACA	1 cut(s)	1096
Bsp143I	GATC	9 cut(s)	626, 972, 1300, 1525, 1536, 1543, 1807, 2258, 2540
BspACI	CCGC	3 cut(s)	67, 1039, 1902
BspANI	GGCC	6 cut(s)	1146, 1901, 2069, 2478, 2660, 2741
BspCNI	CTCAG	4 cut(s)	202, 796, 1460, 2011
BspEI	TCCGGA	2 cut(s)	678, 2455
BspOI	GCTAGC	1 cut(s)	1269
BspPI	GGATC	6 cut(s)	634, 967, 980, 1295, 1520, 1538
BspT107I	GGYRCC	2 cut(s)	1385, 2138
BspTI	CTTAAG	1 cut(s)	1790
BsrGI	TGTACA	1 cut(s)	1096
BsrI	ACTGG	8 cut(s)	367, 863, 1109, 1342, 1358, 1479, 2183, 2309
BssMI	GATC	9 cut(s)	626, 972, 1300, 1525, 1536, 1543, 1807, 2258, 2540
BssNI	GRCGYC	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	1811
BssT1I	CCWWGG	4 cut(s)	659, 1213, 1290, 2823
Bst2BI	CACGAG	1 cut(s)	1811
Bst2UI	CCWGG	8 cut(s)	738, 1391, 1823, 2130, 2143, 2217, 2402, 2503
Bst4CI	ACNGT	3 cut(s)	406, 588, 1686
Bst6I	CTCTTC	2 cut(s)	1481, 2487
BstACI	GRCGYC	1 cut(s)	183
BstAFI	CTTAAG	1 cut(s)	1790
BstAUI	TGTACA	1 cut(s)	1096
BstBAI	YACGTR	1 cut(s)	1917
BstC8I	GCNNGC	6 cut(s)	144, 825, 1267, 1773, 2028, 2748
BstENI	CCTNNNNNAGG	2 cut(s)	1380, 1826
BstF5I	GGATG	6 cut(s)	431, 1198, 1978, 2452, 2479, 2838
BstH2I	RGCGCY	1 cut(s)	1987
BstHHI	GCGC	2 cut(s)	1001, 1986
BstKTI	GATC	9 cut(s)	629, 975, 1303, 1528, 1539, 1546, 1810, 2261, 2543
BstMAI	GTCTC	7 cut(s)	1178, 1337, 1576, 1618, 1879, 1935, 2084
BstMBI	GATC	9 cut(s)	626, 972, 1300, 1525, 1536, 1543, 1807, 2258, 2540
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 44, 2738, 2747, 2756
BstNI	CCWGG	8 cut(s)	738, 1391, 1823, 2130, 2143, 2217, 2402, 2503
BstNSI	RCATGY	2 cut(s)	176, 677
BstPAI	GACNNNNGTC	1 cut(s)	2121
BstSCI	CCNGG	8 cut(s)	736, 1389, 1821, 2128, 2141, 2215, 2400, 2501
BstSFI	CTRYAG	4 cut(s)	239, 630, 1225, 1851
BstSLI	GKGCMC	3 cut(s)	1708, 2071, 2662
BstV1I	GCAGC	7 cut(s)	76, 1129, 1185, 2330, 2333, 2456, 2567
BstV2I	GAAGAC	3 cut(s)	77, 178, 1884
BstX2I	RGATCY	3 cut(s)	626, 972, 2540
BstYI	RGATCY	3 cut(s)	626, 972, 2540
BsuRI	GGCC	6 cut(s)	1146, 1901, 2069, 2478, 2660, 2741
BtrI	CACGTC	3 cut(s)	623, 2243, 2781
BtsCI	GGATG	6 cut(s)	431, 1198, 1978, 2452, 2479, 2838
BtsIMutI	CAGTG	5 cut(s)	207, 1455, 1486, 1553, 2316
Cac8I	GCNNGC	6 cut(s)	144, 825, 1267, 1773, 2028, 2748
CaiI	CAGNNNCTG	2 cut(s)	737, 1066
CfoI	GCGC	2 cut(s)	1001, 1986
CsiI	ACCWGGT	1 cut(s)	2215
Csp6I	GTAC	5 cut(s)	305, 1097, 1253, 1386, 1826
CspCI	CAANNNNNGTGG	6 cut(s)	196, 231, 1462, 1497, 2270, 2305
CviQI	GTAC	5 cut(s)	305, 1097, 1253, 1386, 1826
DpnI	GATC	9 cut(s)	628, 974, 1302, 1527, 1538, 1545, 1809, 2260, 2542
DpnII	GATC	9 cut(s)	626, 972, 1300, 1525, 1536, 1543, 1807, 2258, 2540
DraI	TTTAAA	1 cut(s)	1944
EaeI	YGGCCR	1 cut(s)	1899
Eam1104I	CTCTTC	2 cut(s)	1481, 2487
EarI	CTCTTC	2 cut(s)	1481, 2487
Eco130I	CCWWGG	4 cut(s)	659, 1213, 1290, 2823
Eco147I	AGGCCT	1 cut(s)	1146
Eco24I	GRGCYC	3 cut(s)	463, 2071, 2662
Eco47I	GGWCC	5 cut(s)	229, 579, 912, 2123, 2292
Eco47III	AGCGCT	1 cut(s)	1985
Eco57I	CTGAAG	3 cut(s)	27, 393, 1896
Eco72I	CACGTG	1 cut(s)	1917
Eco88I	CYCGRG	2 cut(s)	108, 2754
EcoNI	CCTNNNNNAGG	2 cut(s)	1380, 1826
EcoO109I	RGGNCCY	5 cut(s)	579, 2067, 2068, 2123, 2659
EcoRII	CCWGG	8 cut(s)	736, 1389, 1821, 2128, 2141, 2215, 2400, 2501
EcoT14I	CCWWGG	4 cut(s)	659, 1213, 1290, 2823
EcoT22I	ATGCAT	2 cut(s)	2454, 2567
EcoT38I	GRGCYC	3 cut(s)	463, 2071, 2662
ErhI	CCWWGG	4 cut(s)	659, 1213, 1290, 2823
Esp3I	CGTCTC	1 cut(s)	1576
FaqI	GGGAC	3 cut(s)	215, 592, 2278
FauI	CCCGC	1 cut(s)	1046
FauNDI	CATATG	3 cut(s)	385, 784, 1639
FblI	GTMKAC	3 cut(s)	238, 619, 1370
Fnu4HI	GCNGC	8 cut(s)	90, 1118, 1199, 1902, 2319, 2322, 2445, 2556
FokI	GGATG	6 cut(s)	418, 1205, 1985, 2439, 2486, 2825
FriOI	GRGCYC	3 cut(s)	463, 2071, 2662
Fsp4HI	GCNGC	8 cut(s)	90, 1118, 1199, 1902, 2319, 2322, 2445, 2556
FspAI	RTGCGCAY	1 cut(s)	1000
FspI	TGCGCA	1 cut(s)	1000
GlaI	GCGC	2 cut(s)	1000, 1985
GluI	GCNGC	8 cut(s)	90, 1118, 1199, 1902, 2319, 2322, 2445, 2556
GsuI	CTGGAG	3 cut(s)	320, 2151, 2485
HaeII	RGCGCY	1 cut(s)	1987
HaeIII	GGCC	6 cut(s)	1146, 1901, 2069, 2478, 2660, 2741
HapII	CCGG	2 cut(s)	679, 2456
HhaI	GCGC	2 cut(s)	1001, 1986
Hin1I	GRCGYC	1 cut(s)	183
Hin6I	GCGC	2 cut(s)	999, 1984
HinP1I	GCGC	2 cut(s)	999, 1984
HincII	GTYRAC	6 cut(s)	120, 196, 271, 402, 620, 2374
HindII	GTYRAC	6 cut(s)	120, 196, 271, 402, 620, 2374
HindIII	AAGCTT	3 cut(s)	852, 2097, 2748
HpaI	GTTAAC	2 cut(s)	120, 196
HpaII	CCGG	2 cut(s)	679, 2456
HphI	GGTGA	6 cut(s)	269, 854, 1306, 1770, 1871, 2573
Hpy99I	CGWCG	1 cut(s)	624
HpyCH4III	ACNGT	3 cut(s)	406, 588, 1686
HpyCH4IV	ACGT	6 cut(s)	183, 622, 1055, 1916, 2242, 2780
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 44, 2738, 2747, 2756
HpySE526I	ACGT	6 cut(s)	183, 622, 1055, 1916, 2242, 2780
Hsp92I	GRCGYC	1 cut(s)	183
HspAI	GCGC	2 cut(s)	999, 1984
Kpn2I	TCCGGA	2 cut(s)	678, 2455
KpnI	GGTACC	1 cut(s)	1389
KspAI	GTTAAC	2 cut(s)	120, 196
Kzo9I	GATC	9 cut(s)	626, 972, 1300, 1525, 1536, 1543, 1807, 2258, 2540
LmnI	GCTCC	7 cut(s)	43, 86, 339, 2023, 2132, 2250, 2504
Lsp1109I	GCAGC	7 cut(s)	76, 1129, 1185, 2330, 2333, 2456, 2567
LweI	GCATC	6 cut(s)	440, 1072, 1714, 1784, 2461, 2471
MabI	ACCWGGT	1 cut(s)	2215
MaeII	ACGT	6 cut(s)	183, 622, 1055, 1916, 2242, 2780
MalI	GATC	9 cut(s)	628, 974, 1302, 1527, 1538, 1545, 1809, 2260, 2542
MboI	GATC	9 cut(s)	626, 972, 1300, 1525, 1536, 1543, 1807, 2258, 2540
MfeI	CAATTG	2 cut(s)	136, 452
MflI	RGATCY	3 cut(s)	626, 972, 2540
MhlI	GDGCHC	6 cut(s)	336, 463, 1708, 2071, 2662, 2761
MlyI	GAGTC	4 cut(s)	698, 1616, 1937, 2774
Mph1103I	ATGCAT	2 cut(s)	2454, 2567
MroI	TCCGGA	2 cut(s)	678, 2455
MroXI	GAANNNNTTC	1 cut(s)	2646
MseI	TTAA	7 cut(s)	119, 195, 644, 1422, 1466, 1791, 1943
MslI	CAYNNNNRTG	4 cut(s)	177, 2245, 2417, 2850
MspA1I	CMGCKG	2 cut(s)	47, 1874
MspCI	CTTAAG	1 cut(s)	1790
MspI	CCGG	2 cut(s)	679, 2456
MspR9I	CCNGG	8 cut(s)	738, 1391, 1823, 2130, 2143, 2217, 2402, 2503
MunI	CAATTG	2 cut(s)	136, 452
Mva1269I	GAATGC	3 cut(s)	92, 1001, 1201
MvaI	CCWGG	8 cut(s)	738, 1391, 1823, 2130, 2143, 2217, 2402, 2503
MwoI	GCNNNNNNNGC	5 cut(s)	16, 44, 2738, 2747, 2756
NdeI	CATATG	3 cut(s)	385, 784, 1639
NdeII	GATC	9 cut(s)	626, 972, 1300, 1525, 1536, 1543, 1807, 2258, 2540
NheI	GCTAGC	1 cut(s)	1265
NmuCI	GTSAC	3 cut(s)	1619, 1912, 2114
NsbI	TGCGCA	1 cut(s)	1000
NsiI	ATGCAT	2 cut(s)	2454, 2567
NspI	RCATGY	2 cut(s)	176, 677
PaeR7I	CTCGAG	1 cut(s)	2754
PasI	CCCWGGG	1 cut(s)	1390
PceI	AGGCCT	1 cut(s)	1146
PciI	ACATGT	2 cut(s)	172, 673
PcsI	WCGNNNNNNNCGW	1 cut(s)	616
PctI	GAATGC	3 cut(s)	92, 1001, 1201
PdmI	GAANNNNTTC	1 cut(s)	2646
PflMI	CCANNNNNTGG	1 cut(s)	2216
PfoI	TCCNGGA	1 cut(s)	2128
PkrI	GCNGC	8 cut(s)	91, 1119, 1200, 1903, 2320, 2323, 2446, 2557
PleI	GAGTC	4 cut(s)	698, 1616, 1936, 2773
PmaCI	CACGTG	1 cut(s)	1917
PmlI	CACGTG	1 cut(s)	1917
PpsI	GAGTC	4 cut(s)	698, 1616, 1936, 2773
Ppu21I	YACGTR	1 cut(s)	1917
PpuMI	RGGWCCY	2 cut(s)	579, 2123
PscI	ACATGT	2 cut(s)	172, 673
PshAI	GACNNNNGTC	1 cut(s)	2121
Psp5II	RGGWCCY	2 cut(s)	579, 2123
Psp6I	CCWGG	8 cut(s)	736, 1389, 1821, 2128, 2141, 2215, 2400, 2501
PspCI	CACGTG	1 cut(s)	1917
PspGI	CCWGG	8 cut(s)	736, 1389, 1821, 2128, 2141, 2215, 2400, 2501
PspOMI	GGGCCC	2 cut(s)	2067, 2658
PspPPI	RGGWCCY	2 cut(s)	579, 2123
PstNI	CAGNNNCTG	2 cut(s)	737, 1066
PsuI	RGATCY	3 cut(s)	626, 972, 2540
PvuII	CAGCTG	2 cut(s)	47, 1874
RsaI	GTAC	5 cut(s)	306, 1098, 1254, 1387, 1827
RsaNI	GTAC	5 cut(s)	305, 1097, 1253, 1386, 1826
RseI	CAYNNNNRTG	4 cut(s)	177, 2245, 2417, 2850
SalI	GTCGAC	1 cut(s)	618
SaqAI	TTAA	7 cut(s)	119, 195, 644, 1422, 1466, 1791, 1943
SatI	GCNGC	8 cut(s)	90, 1118, 1199, 1902, 2319, 2322, 2445, 2556
Sau3AI	GATC	9 cut(s)	626, 972, 1300, 1525, 1536, 1543, 1807, 2258, 2540
SchI	GAGTC	4 cut(s)	698, 1616, 1937, 2774
ScrFI	CCNGG	8 cut(s)	738, 1391, 1823, 2130, 2143, 2217, 2402, 2503
SduI	GDGCHC	6 cut(s)	336, 463, 1708, 2071, 2662, 2761
SexAI	ACCWGGT	1 cut(s)	2215
SfaNI	GCATC	6 cut(s)	440, 1072, 1714, 1784, 2461, 2471
SfcI	CTRYAG	4 cut(s)	239, 630, 1225, 1851
Sfr274I	CTCGAG	1 cut(s)	2754
SinI	GGWCC	5 cut(s)	229, 579, 912, 2123, 2292
SlaI	CTCGAG	1 cut(s)	2754
SmiMI	CAYNNNNRTG	4 cut(s)	177, 2245, 2417, 2850
SmlI	CTYRAG	4 cut(s)	1399, 1615, 1790, 2754
SmoI	CTYRAG	4 cut(s)	1399, 1615, 1790, 2754
SseBI	AGGCCT	1 cut(s)	1146
SsiI	CCGC	3 cut(s)	67, 1039, 1902
StuI	AGGCCT	1 cut(s)	1146
StyD4I	CCNGG	8 cut(s)	736, 1389, 1821, 2128, 2141, 2215, 2400, 2501
StyI	CCWWGG	4 cut(s)	659, 1213, 1290, 2823
TaaI	ACNGT	3 cut(s)	406, 588, 1686
TaiI	ACGT	6 cut(s)	186, 625, 1058, 1919, 2245, 2783
TaqI	TCGA	6 cut(s)	82, 619, 967, 2078, 2702, 2755
TaqII	GACCGA	1 cut(s)	2024
TatI	WGTACW	2 cut(s)	304, 1096
TauI	GCSGC	1 cut(s)	1904
Tru1I	TTAA	7 cut(s)	119, 195, 644, 1422, 1466, 1791, 1943
Tru9I	TTAA	7 cut(s)	119, 195, 644, 1422, 1466, 1791, 1943
TscAI	CASTG	5 cut(s)	214, 1455, 1486, 1560, 2316
TseFI	GTSAC	3 cut(s)	1619, 1912, 2114
TseI	GCWGC	7 cut(s)	89, 1117, 1198, 2318, 2321, 2444, 2555
Tsp45I	GTSAC	3 cut(s)	1619, 1912, 2114
TspGWI	ACGGA	8 cut(s)	181, 213, 548, 976, 1270, 1558, 2649, 2799
TspRI	CASTG	5 cut(s)	214, 1455, 1486, 1560, 2316
Van91I	CCANNNNNTGG	1 cut(s)	2216
Vha464I	CTTAAG	1 cut(s)	1790
VpaK11BI	GGWCC	5 cut(s)	229, 579, 912, 2123, 2292
XagI	CCTNNNNNAGG	2 cut(s)	1380, 1826
XapI	RAATTY	5 cut(s)	350, 1358, 1676, 2164, 2625
XbaI	TCTAGA	2 cut(s)	410, 2485
XceI	RCATGY	2 cut(s)	176, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1478
XhoI	CTCGAG	1 cut(s)	2754
XmiI	GTMKAC	3 cut(s)	238, 619, 1370
XmnI	GAANNNNTTC	1 cut(s)	2646
ZraI	GACGTC	1 cut(s)	184
Zsp2I	ATGCAT	2 cut(s)	2454, 2567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.