Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004200

Physical Location & Seq

Genomic Coordinates Reverse (-)

56577344 .. 56578189

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G028870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAGAACGGCTCCAAAAGACGAAGCGAAGTAGAAATCAAAGTTCTTGACAAGGTCGGAGAAGTGATCTCCGAATTACACAAGGCCAAGCACGCAGACCAAGTCATTTCCGCGCTGCACTCCCTCGCTATTCTTCTCTTCCCTCTCGATTCTTCTCTCTTCTCAGGTGCTATTGGTGAGCGGTGCAGAGAGCAGCATCGTAGAGGAAGGAAGCCTGATGAGTTAATTGAGAAGGAACGAAAAGGGAGGCAGCACGCAATGTCGCTTAGAAGTATGCTGCCAGGCATGGACGGTGGAAACTCTTCTAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04150 map03460 map04150

Pfam Domains

Protein Families

Telomere_reg-2

Protein Analysis

104

Amino Acids

11.59

Weight (kDa)

8.89

Isoelectric Point (pI)

55.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48470 AT3G48470
fragaria_vesca	FvH4_5g07361 FvH4_5g07460 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490
malus_domestica	MD06G1154000.v1.1 MD14G1163600.v1.1
prunus_persica	Prupe.5G157000_v2.0.a1
pyrus_communis	pycom14g13630
rosa_chinensis	RchiOBHm_Chr7g0191161
rosa_laevigata	RLG00000004472
rosa_multiflora	Rmu_co8075350.1_g000001 Rmu_sc0000701.1_g000017 Rmu_sc0001585.1_g000002 Rmu_sc0016007.1_g000006 Rmu_sc0039738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263990
rosa_rugosa	Rorug06G0509300
rosa_samantha	Rh1AG145200 Rh1AG325800 Rh1CG136700 Rh1CG136800 Rh1DG151800 Rh5CG463100 Rh7AG116500 Rh7BG118700 Rh7CG121400 Rh7DG119700
rosa_wichuraiana	Rw1G028870 Rw7G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	181
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	111, 181
AjnI	CCWGG	1 cut(s)	280
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	4 cut(s)	115, 193, 250, 277
Asp700I	GAANNNNTTC	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	188
BbvI	GCAGC	4 cut(s)	102, 205, 262, 264
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	282
BfaI	CTAG	1 cut(s)	306
BisI	GCNGC	4 cut(s)	116, 194, 251, 278
BlsI	GCNGC	4 cut(s)	117, 195, 252, 279
Bme1390I	CCNGG	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	205
BplI	GAGNNNNNCTC	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	177
BseXI	GCAGC	4 cut(s)	102, 205, 262, 264
BsgI	GTGCAG	2 cut(s)	101, 205
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	111, 181
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	264
BssMI	GATC	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	3 cut(s)	143, 164, 307
BstC8I	GCNNGC	2 cut(s)	93, 255
BstDEI	CTNAG	2 cut(s)	163, 266
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	4 cut(s)	102, 205, 262, 264
BsuRI	GGCC	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	93, 255
CfoI	GCGC	1 cut(s)	115
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	3 cut(s)	12, 86, 214
CviKI_1	RGCY	3 cut(s)	12, 86, 214
DdeI	CTNAG	2 cut(s)	163, 266
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	3 cut(s)	143, 164, 307
EarI	CTCTTC	3 cut(s)	143, 164, 307
EcoRII	CCWGG	1 cut(s)	280
FaeI	CATG	1 cut(s)	289
FaiI	YATR	2 cut(s)	275, 287
FatI	CATG	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	116, 194, 251, 278
Fsp4HI	GCNGC	4 cut(s)	116, 194, 251, 278
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	4 cut(s)	116, 194, 251, 278
HaeIII	GGCC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	1 cut(s)	149
HphI	GGTGA	1 cut(s)	188
Hpy188I	TCNGA	2 cut(s)	59, 73
Hpy188III	TCNNGA	2 cut(s)	47, 146
HpyAV	CCTTC	2 cut(s)	201, 226
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	2 cut(s)	118, 186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	163, 266
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	4 cut(s)	150, 228, 267, 294
Lsp1109I	GCAGC	4 cut(s)	102, 205, 262, 264
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	306
MalI	GATC	1 cut(s)	68
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	1 cut(s)	66
MboII	GAAGA	5 cut(s)	125, 130, 144, 151, 294
MluCI	AATT	2 cut(s)	74, 225
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	134, 153, 197, 240
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	149
PflFI	GACNNNGTC	2 cut(s)	53, 101
PkrI	GCNGC	4 cut(s)	117, 195, 252, 279
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	13
PsyI	GACNNNGTC	2 cut(s)	53, 101
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	4 cut(s)	116, 194, 251, 278
Sau3AI	GATC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	282
SetI	ASST	2 cut(s)	57, 169
SfaNI	GCATC	1 cut(s)	205
Sse9I	AATT	2 cut(s)	74, 225
SsiI	CCGC	2 cut(s)	111, 181
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	293
TaqI	TCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	74, 225
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TseI	GCWGC	4 cut(s)	115, 193, 250, 277
Tth111I	GACNNNGTC	2 cut(s)	53, 101
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.