Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004200

Physical Location & Seq

Genomic Coordinates Forward (+)

4351465 .. 4352665

Gene Structure 1201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGAATGGCACCAAAAGACGAATCGAAGTAGAAATCAAAGTTCTCGACAAGGTGGGAGAAGTAATCTCCGAATTAAACAAGGCCAAGCACGCAGACCAAGTCATCTCCGCGCTTCACTCCCTCGCCGTTCTTCTCTTCCCTCTCGATCCTTCTCTCTTCTCAAGTGCTGTTGGCGAGCGGTACAGGGAGCAGGTTCTTAGTGTTGAAGCTCCTTCGGCTGTGGAGAGAAGCGAGTGGTGGAAGGCGTTTTACCGTGGAGCTTCATTCAGGACATTTGCTAGGGTTTTGTTGACTGGTTATGTTAGAAATGATATGCTCTCTTGTTGCGTGCAGACGTTGCTTCCAATTGGTTGGCTTGTTTCCCGTTTTCAGCACGGAAACATGTGTGTGTTTTCTTTGTTAACGGCCTTGTCACTGAGGTTGTTCAAGGTTCTGGTCCCTTGTCTACAGCAAAGTGGGAGCGGTGATGTCAATGTCAATGCTGTTCAATCCAATACTGAAAGGTTGCTCGTACTTAGCTTGCTTGAAAATAAGGGGGTGCTCCAGATGGCTAGAGAATTTGGTGGCCCTTTCCAGTCTGAAGAAAATCTCAAGTCAACTGTATCTAGAGTAGCACAGATTGTTGCATCTATACCTGACAAAGCAAAATTGAGATCCCCAACTTCTCTTTTGTCACAGTATCCTTTAATCTCTTCTGCCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04150 map03460 map04150

Pfam Domains

Protein Families

Telomere_reg-2

Protein Analysis

236

Amino Acids

25.97

Weight (kDa)

9.11

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48470 AT3G48470
fragaria_vesca	FvH4_5g07361 FvH4_5g07460 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490
malus_domestica	MD06G1154000.v1.1 MD14G1163600.v1.1
prunus_persica	Prupe.5G157000_v2.0.a1
pyrus_communis	pycom14g13630
rosa_chinensis	RchiOBHm_Chr7g0191161
rosa_laevigata	RLG00000004472
rosa_multiflora	Rmu_co8075350.1_g000001 Rmu_sc0000701.1_g000017 Rmu_sc0001585.1_g000002 Rmu_sc0016007.1_g000006 Rmu_sc0039738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263990
rosa_rugosa	Rorug06G0509300
rosa_samantha	Rh1AG145200 Rh1AG325800 Rh1CG136700 Rh1CG136800 Rh1DG151800 Rh5CG463100 Rh7AG116500 Rh7BG118700 Rh7CG121400 Rh7DG119700
rosa_wichuraiana	Rw1G028870 Rw7G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	11
AccBSI	CCGCTC	2 cut(s)	181, 465
AccI	GTMKAC	1 cut(s)	448
AccII	CGCG	1 cut(s)	113
AciI	CCGC	3 cut(s)	111, 181, 465
AclWI	GGATC	2 cut(s)	143, 651
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	2 cut(s)	185, 516
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	4 cut(s)	209, 430, 491, 530
AluBI	AGCT	3 cut(s)	212, 263, 522
AluI	AGCT	3 cut(s)	212, 263, 522
Alw21I	GWGCWC	1 cut(s)	546
AlwI	GGATC	2 cut(s)	143, 651
AoxI	GGCC	3 cut(s)	84, 408, 568
ApoI	RAATTY	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	2 cut(s)	439, 569
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	11
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
Bbv12I	GWGCWC	1 cut(s)	546
BccI	CCATC	1 cut(s)	544
BceAI	ACGGC	2 cut(s)	113, 423
BciVI	GTATCC	1 cut(s)	693
BfaI	CTAG	3 cut(s)	282, 555, 609
BfmI	CTRYAG	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	693
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	2 cut(s)	439, 569
BmiI	GGNNCC	2 cut(s)	13, 441
BmsI	GCATC	1 cut(s)	638
BpmI	CTGGAG	1 cut(s)	530
BpuEI	CTTGAG	2 cut(s)	148, 578
BsaJI	CCNNGG	1 cut(s)	256
Bse1I	ACTGG	2 cut(s)	301, 577
BseDI	CCNNGG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	2 cut(s)	301, 577
BsgI	GTGCAG	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	3 cut(s)	86, 410, 570
BshNI	GGYRCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	702
BslFI	GGGAC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	3 cut(s)	86, 410, 570
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	148, 656
BspACI	CCGC	3 cut(s)	111, 181, 465
BspANI	GGCC	3 cut(s)	86, 410, 570
BspCNI	CTCAG	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	13, 441
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	2 cut(s)	143, 651
BspT107I	GGYRCC	1 cut(s)	11
BsrBI	CCGCTC	2 cut(s)	181, 465
BsrI	ACTGG	2 cut(s)	301, 577
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	2 cut(s)	148, 656
Bst4CI	ACNGT	3 cut(s)	257, 604, 681
Bst6I	CTCTTC	3 cut(s)	143, 164, 700
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstC8I	GCNNGC	4 cut(s)	93, 179, 332, 524
BstDEI	CTNAG	3 cut(s)	200, 419, 518
BstDSI	CCRYGG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	2 cut(s)	151, 659
BstMBI	GATC	2 cut(s)	148, 656
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 218, 340
BstNSI	RCATGY	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	449
BstUI	CGCG	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	656
BstXI	CCANNNNNNTGG	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	656
BsuI	GTATCC	1 cut(s)	693
BsuRI	GGCC	3 cut(s)	86, 410, 570
BtgI	CCRYGG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	416
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	4 cut(s)	93, 179, 332, 524
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	439, 569
Csp6I	GTAC	2 cut(s)	184, 515
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	9 cut(s)	86, 212, 221, 263, 358, 410, 522, 554, 570
CviKI_1	RGCY	9 cut(s)	86, 212, 221, 263, 358, 410, 522, 554, 570
CviQI	GTAC	2 cut(s)	184, 515
DdeI	CTNAG	3 cut(s)	200, 419, 518
DpnI	GATC	2 cut(s)	150, 658
DpnII	GATC	2 cut(s)	148, 656
Eam1104I	CTCTTC	3 cut(s)	143, 164, 700
EarI	CTCTTC	3 cut(s)	143, 164, 700
Eco47I	GGWCC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	603
FaeI	CATG	1 cut(s)	388
FaiI	YATR	4 cut(s)	303, 317, 386, 635
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	448
FspBI	CTAG	3 cut(s)	282, 555, 609
GlaI	GCGC	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	530
HaeIII	GGCC	3 cut(s)	86, 410, 570
HapII	CCGG	1 cut(s)	702
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	1 cut(s)	388
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	3 cut(s)	294, 405, 600
HindII	GTYRAC	3 cut(s)	294, 405, 600
HinfI	GANTC	1 cut(s)	24
HpaI	GTTAAC	1 cut(s)	405
HpaII	CCGG	1 cut(s)	702
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	4 cut(s)	294, 405, 449, 600
Hpy188I	TCNGA	2 cut(s)	73, 583
Hpy188III	TCNNGA	5 cut(s)	47, 146, 271, 547, 609
Hpy8I	GTNNAC	4 cut(s)	294, 405, 449, 600
HpyAV	CCTTC	3 cut(s)	162, 225, 238
HpyCH4III	ACNGT	3 cut(s)	257, 604, 681
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	2 cut(s)	334, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 218, 340
HpyF3I	CTNAG	3 cut(s)	200, 419, 518
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	388
HspAI	GCGC	1 cut(s)	113
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	148, 656
LmnI	GCTCC	5 cut(s)	190, 217, 260, 462, 549
LpnPI	CCDG	8 cut(s)	172, 179, 256, 282, 422, 560, 590, 651
LweI	GCATC	1 cut(s)	638
MaeI	CTAG	3 cut(s)	282, 555, 609
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	2 cut(s)	414, 675
MalI	GATC	2 cut(s)	150, 658
MbiI	CCGCTC	2 cut(s)	181, 465
MboI	GATC	2 cut(s)	148, 656
MboII	GAAGA	5 cut(s)	125, 130, 151, 596, 687
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	1 cut(s)	656
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	4 cut(s)	74, 348, 560, 650
MnlI	CCTC	3 cut(s)	134, 153, 414
MseI	TTAA	3 cut(s)	77, 404, 689
MslI	CAYNNNNRTG	1 cut(s)	389
MspI	CCGG	1 cut(s)	702
MunI	CAATTG	1 cut(s)	348
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	92, 218, 340
NdeII	GATC	2 cut(s)	148, 656
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	2 cut(s)	13, 441
NmuCI	GTSAC	2 cut(s)	414, 675
NspI	RCATGY	1 cut(s)	388
PciI	ACATGT	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	24
PflFI	GACNNNGTC	1 cut(s)	101
PscI	ACATGT	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	13, 441
PspPI	GGNCC	2 cut(s)	439, 569
PsuI	RGATCY	1 cut(s)	656
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	2 cut(s)	185, 516
RsaNI	GTAC	2 cut(s)	184, 515
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	3 cut(s)	77, 404, 689
Sau3AI	GATC	2 cut(s)	148, 656
Sau96I	GGNCC	2 cut(s)	439, 569
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	1 cut(s)	638
SfcI	CTRYAG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	2 cut(s)	163, 593
SmoI	CTYRAG	2 cut(s)	163, 593
Sse9I	AATT	4 cut(s)	74, 348, 560, 650
SsiI	CCGC	3 cut(s)	111, 181, 465
SspMI	CTAG	3 cut(s)	282, 555, 609
TaaI	ACNGT	3 cut(s)	257, 604, 681
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	3 cut(s)	27, 48, 147
TasI	AATT	4 cut(s)	74, 348, 560, 650
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	3 cut(s)	77, 404, 689
Tru9I	TTAA	3 cut(s)	77, 404, 689
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	2 cut(s)	414, 675
Tsp45I	GTSAC	2 cut(s)	414, 675
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	423
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	1 cut(s)	560
XbaI	TCTAGA	1 cut(s)	608
XceI	RCATGY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	448
XspI	CTAG	3 cut(s)	282, 555, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.